Mapping of interaction sites of the Schizosaccharomyces pombe protein Translin with nucleic acids and proteins: a combined molecular genetics and bioinformatics study
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Laura Pérez-Cano | Juan Fernández-Recio | Fabian Glaser | L. Perez-Cano | J. Fernández-Recio | F. Glaser | E. Eliahoo | H. Manor | Elad Eliahoo | Ron Ben Yosef | Haim Manor | Ron Ben Yosef | Laura Perez-Cano
[1] V. Chennathukuzhi,et al. A TB-RBP and Ter ATPase complex accompanies specific mRNAs from nuclei through the nuclear pores and into intercellular bridges in mouse male germ cells. , 2002, Developmental biology.
[2] V. Chennathukuzhi,et al. Altering the GTP binding site of the DNA/RNA-binding protein, Translin/TB-RBP, decreases RNA binding and may create a dominant negative phenotype. , 2001, Nucleic acids research.
[3] K. Gould,et al. Vectors and gene targeting modules for tandem affinity purification in Schizosaccharomyces pombe , 2001, Yeast.
[4] J. Knutson,et al. Fluorescence studies of pyrene maleimide-labeled translin: excimer fluorescence indicates subunits associate in a tail-to-tail configuration to form octamer. , 2002, Biochemistry.
[5] J. Baraban,et al. Dendritic trafficking of BDNF mRNA is mediated by translin and blocked by the G196A (Val66Met) mutation , 2009, Proceedings of the National Academy of Sciences.
[6] D. A. O’Brien,et al. Mouse Testis Brain RNA-Binding Protein/Translin Selectively Binds to the Messenger RNA of the Fibrous Sheath Protein Glyceraldehyde 3-Phosphate Dehydrogenase-S and Suppresses Its Translation In Vitro1 , 2003, Biology of reproduction.
[7] N. Grishin,et al. C3PO, an Endoribonuclease That Promotes RNAi by Facilitating RISC Activation , 2009, Science.
[8] Sitao Wu,et al. LOMETS: A local meta-threading-server for protein structure prediction , 2007, Nucleic acids research.
[9] Janet M Thornton,et al. Using electrostatic potentials to predict DNA-binding sites on DNA-binding proteins. , 2003, Nucleic acids research.
[10] M Kasai,et al. Isolation and characterization of a cDNA encoding a Translin‐like protein, TRAX , 1997, FEBS letters.
[11] J. Baraban,et al. Somatodendritic Localization of Translin, a Component of the Translin/Trax RNA Binding Complex , 2000, Journal of neurochemistry.
[12] Yael Mandel-Gutfreund,et al. Annotating nucleic acid-binding function based on protein structure. , 2003, Journal of molecular biology.
[13] Itay Mayrose,et al. ConSurf 2005: the projection of evolutionary conservation scores of residues on protein structures , 2005, Nucleic Acids Res..
[14] E. Craig,et al. Genomic libraries and a host strain designed for highly efficient two-hybrid selection in yeast. , 1996, Genetics.
[15] R. J. McFarlane,et al. Functional characterisation of the Schizosaccharomyces pombe homologue of the leukaemia-associated translocation breakpoint binding protein translin and its binding partner, TRAX. , 2008, Biochimica et biophysica acta.
[16] L. Perez-Cano,et al. Optimal protein‐RNA area, OPRA: A propensity‐based method to identify RNA‐binding sites on proteins , 2010, Proteins.
[17] H. Manor,et al. The human protein translin specifically binds single-stranded microsatellite repeats, d(GT)n, and G-strand telomeric repeats, d(TTAGGG)n: a study of the binding parameters. , 2004, Journal of molecular biology.
[18] Liam J. McGuffin,et al. The ModFOLD server for the quality assessment of protein structural models , 2008, Bioinform..
[19] Jonathan J. Ellis,et al. Protein–RNA interactions: Structural analysis and functional classes , 2006, Proteins.
[20] N. Adir,et al. Cloning and characterization of the Schizosaccharomyces pombe homologs of the human protein Translin and the Translin-associated protein TRAX , 2005, Nucleic acids research.
[21] A. Sali,et al. Modeling of loops in protein structures , 2000, Protein science : a publication of the Protein Society.
[22] J. Baraban,et al. Trax is a component of the Translin‐containing RNA binding complex , 2002, Journal of neurochemistry.
[23] Katsunori Aoki,et al. Isolation and characterization of a cDNA encoding a Translin-like protein , 1997 .
[24] M. Mann,et al. The abc's (and xyz's) of peptide sequencing , 2004, Nature Reviews Molecular Cell Biology.
[25] M. Kasai,et al. The DNA binding activity of Translin is mediated by a basic region in the ring‐shaped structure conserved in evolution , 1999, FEBS letters.
[26] A. Omori,et al. A novel gene, Translin, encodes a recombination hotspot binding protein associated with chromosomal translocations , 1995, Nature Genetics.
[27] Jun Wang,et al. Testis brain ribonucleic acid-binding protein/translin possesses both single-stranded and double-stranded ribonuclease activities. , 2004, Biochemistry.
[28] W. Gu,et al. Testis-brain RNA-binding protein, a testicular translational regulatory RNA-binding protein, is present in the brain and binds to the 3' untranslated regions of transported brain mRNAs. , 1995, Biology of reproduction.
[29] H. Manor,et al. Characterization of a multisubunit human protein which selectively binds single stranded d(GA)n and d(GT)n sequence repeats in DNA. , 1993, Nucleic acids research.
[30] N. Hecht,et al. Mouse Testis Brain Ribonucleic Acid-Binding Protein/Translin Colocalizes with Microtubules and Is Immunoprecipitated with Messenger Ribonucleic Acids Encoding Myelin Basic Protein, α Calmodulin Kinase II, and Protamines 1 and 21 , 2000, Biology of reproduction.
[31] J. Strominger,et al. Recombination hotspot associated factors specifically recognize novel target sequences at the site of interchromosomal rearrangements in T-ALL patients with t(8;14)(q24;q11) and t(1;14)(p32;q11). , 1994, International immunology.
[32] P. Hart,et al. Crystal structure of TB-RBP, a novel RNA-binding and regulating protein. , 2002, Journal of molecular biology.
[33] Adrian A Canutescu,et al. SCWRL and MolIDE: computer programs for side-chain conformation prediction and homology modeling , 2008, Nature Protocols.
[34] H. Moriyama,et al. Structure of human translin at 2.2 A resolution. , 2004, Acta crystallographica. Section D, Biological crystallography.
[35] Tal Pupko,et al. ConSurf: Identification of Functional Regions in Proteins by Surface-Mapping of Phylogenetic Information , 2003, Bioinform..
[36] Itay Mayrose,et al. Rate4Site: an algorithmic tool for the identification of functional regions in proteins by surface mapping of evolutionary determinants within their homologues , 2002, ISMB.
[37] Yael Mandel-Gutfreund,et al. Classifying RNA-Binding Proteins Based on Electrostatic Properties , 2008, PLoS Comput. Biol..
[38] Yang Zhang,et al. I-TASSER server for protein 3D structure prediction , 2008, BMC Bioinformatics.
[39] V. Chennathukuzhi,et al. Trax (Translin-associated Factor X), a Primarily Cytoplasmic Protein, Inhibits the Binding of TB-RBP (Translin) to RNA* , 2001, The Journal of Biological Chemistry.
[40] E. Egelman,et al. Electron microscopic studies of the translin octameric ring. , 2001, Journal of structural biology.
[41] Piero Fariselli,et al. ConSeq: the identification of functionally and structurally important residues in protein sequences , 2004, Bioinform..
[42] R. Abagyan,et al. Optimal docking area: A new method for predicting protein–protein interaction sites , 2004, Proteins.
[43] B. Séraphin,et al. A generic protein purification method for protein complex characterization and proteome exploration , 1999, Nature Biotechnology.
[44] H. Manor,et al. High-resolution physical and functional mapping of the template adjacent DNA binding site in catalytically active telomerase , 2007, Proceedings of the National Academy of Sciences.
[45] V. Chennathukuzhi,et al. Elevated levels of the polyadenylation factor CstF 64 enhance formation of the 1kB Testis brain RNA‐binding protein (TB‐RBP) mRNA in male germ cells , 2001, Molecular reproduction and development.
[46] R. Doolittle,et al. A simple method for displaying the hydropathic character of a protein. , 1982, Journal of molecular biology.