Metagenomic mining for microbiologists

[1]  Robert G. Beiko,et al.  Identifying biologically relevant differences between metagenomic communities , 2010, Bioinform..

[2]  H. Wexler,et al.  Induction of multiple antibiotic resistance in Bacteroides fragilis by benzene and benzene-derived active compounds of commonly used analgesics, antiseptics and cleaning agents. , 2007, The Journal of antimicrobial chemotherapy.

[3]  P. Sassone-Corsi,et al.  Computational Improvements Reveal Great Bacterial Diversity and High Metal Toxicity in Soil , 2022 .

[4]  Kenneth H Nealson,et al.  Metagenomics and the global ocean survey: what's in it for us, and why should we care? , 2007, The ISME Journal.

[5]  W. Bishai,et al.  cAMP signaling in Mycobacterium tuberculosis. , 2009, Indian journal of experimental biology.

[6]  K. Konstantinidis,et al.  Trends between gene content and genome size in prokaryotic species with larger genomes. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[7]  Jason D. Gans,et al.  Computational Improvements Reveal Great Bacterial Diversity and High Metal Toxicity in Soil , 2005, Science.

[8]  E. Myers,et al.  Basic local alignment search tool. , 1990, Journal of molecular biology.

[9]  David M. Simcha,et al.  Tackling the widespread and critical impact of batch effects in high-throughput data , 2010, Nature Reviews Genetics.

[10]  Andreas Wilke,et al.  phylogenetic and functional analysis of metagenomes , 2022 .

[11]  S. Warren,et al.  Oceanic phytoplankton, atmospheric sulphur, cloud albedo and climate , 1987, Nature.

[12]  J. Banfield,et al.  Community structure and metabolism through reconstruction of microbial genomes from the environment , 2004, Nature.

[13]  D. Willner,et al.  Metagenomic signatures of 86 microbial and viral metagenomes. , 2009, Environmental microbiology.

[14]  S. Tringe,et al.  Comparative Metagenomics of Microbial Communities , 2004, Science.

[15]  R. O'dor,et al.  Survey data are still vital to science , 2011, Nature.

[16]  Mark J. Bailey,et al.  TerraGenome: a consortium for the sequencing of a soil metagenome , 2009, Nature Reviews Microbiology.

[17]  R. Knight,et al.  Worlds within worlds: evolution of the vertebrate gut microbiota , 2008, Nature Reviews Microbiology.

[18]  Hiroshi Mori,et al.  Comparative Metagenomics Revealed Commonly Enriched Gene Sets in Human Gut Microbiomes , 2007, DNA research : an international journal for rapid publication of reports on genes and genomes.

[19]  J. Martínez,et al.  Functional role of bacterial multidrug efflux pumps in microbial natural ecosystems. , 2009, FEMS microbiology reviews.

[20]  Rick Stevens,et al.  Erratum: Functional metagenomic profiling of nine biomes , 2008 .

[21]  J. Tiedje,et al.  To sequence or not to sequence the whole-soil metagenome? , 2009 .

[22]  L. Øvreås,et al.  Prokaryotic Diversity--Magnitude, Dynamics, and Controlling Factors , 2002, Science.

[23]  Hiroshi Nikaido,et al.  Efflux-Mediated Drug Resistance in Bacteria , 2012, Drugs.

[24]  Natalia Ivanova,et al.  Metagenomic analysis of two enhanced biological phosphorus removal (EBPR) sludge communities , 2006, Nature Biotechnology.

[25]  Tom O. Delmont,et al.  Accessing the Soil Metagenome for Studies of Microbial Diversity , 2010, Applied and Environmental Microbiology.

[26]  W. Sunda,et al.  An antioxidant function for DMSP and DMS in marine algae , 2002, Nature.

[27]  Rick L. Stevens,et al.  Functional metagenomic profiling of nine biomes , 2008, Nature.