Genomics of the origin and evolution of Citrus

[1]  P. Gibbard,et al.  Global chronostratigraphical correlation table for the last 2.7 million years, version 2019 QI-500 , 2008, Quaternary International.

[2]  Y. Ruan,et al.  Genomic analyses of primitive, wild and cultivated citrus provide insights into asexual reproduction , 2017, Nature Genetics.

[3]  A. Fujiyama,et al.  Hybrid Origins of Citrus Varieties Inferred from DNA Marker Analysis of Nuclear and Organelle Genomes , 2016, PloS one.

[4]  P. Ollitrault,et al.  Phylogenetic origin of limes and lemons revealed by cytoplasmic and nuclear markers. , 2016, Annals of botany.

[5]  H. Webber,et al.  The Citrus industry , 2016 .

[6]  B. Gaut,et al.  Genomics and the Contrasting Dynamics of Annual and Perennial Domestication. , 2015, Trends in genetics : TIG.

[7]  S. Jähnig,et al.  The role of the uplift of the Qinghai‐Tibetan Plateau for the evolution of Tibetan biotas , 2015, Biological reviews of the Cambridge Philosophical Society.

[8]  R. Spicer,et al.  Late Miocene southwestern Chinese floristic diversity shaped by the southeastern uplift of the Tibetan Plateau , 2014 .

[9]  Karin M. Fredrikson,et al.  Complex history of admixture during citrus domestication revealed by genome analysis , 2014 .

[10]  Shing‐Fan Huang,et al.  Hypothesizing Origin, Migration Routes and Distribution Patterns of Gymnosperms in Taiwan , 2014 .

[11]  Andrea Zuccolo,et al.  Sequencing of diverse mandarin, pummelo and orange genomes reveals complex history of admixture during citrus domestication , 2014, Nature Biotechnology.

[12]  B. Gross,et al.  Archaeological and genetic insights into the origins of domesticated rice , 2014, Proceedings of the National Academy of Sciences.

[13]  J. Blusztajn,et al.  Reconstructing chemical weathering, physical erosion and monsoon intensity since 25 Ma in the northern South China Sea: A review of competing proxies , 2014 .

[14]  Hang Sun,et al.  Evolutionary diversifications of plants on the Qinghai-Tibetan Plateau , 2014, Front. Genet..

[15]  G. Nesom Citrus trifoliata (Rutaceae): Review of biology and distribution in the USA , 2014 .

[16]  S. Manchester,et al.  Citrus linczangensis sp. n., a Leaf Fossil of Rutaceae from the Late Miocene of Yunnan, China , 2013, International Journal of Plant Sciences.

[17]  M. Hufford,et al.  The Genomic Signature of Crop-Wild Introgression in Maize , 2012, PLoS genetics.

[18]  Niranjan Nagarajan,et al.  The draft genome of sweet orange (Citrus sinensis) , 2012, Nature Genetics.

[19]  M. Stephens,et al.  Genome-wide Efficient Mixed Model Analysis for Association Studies , 2012, Nature Genetics.

[20]  T. Giraud,et al.  New Insight into the History of Domesticated Apple: Secondary Contribution of the European Wild Apple to the Genome of Cultivated Varieties , 2012, PLoS genetics.

[21]  Maxim Teslenko,et al.  MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space , 2012, Systematic biology.

[22]  J. Richardson,et al.  West to east dispersal and subsequent rapid diversification of the mega‐diverse genus Begonia (Begoniaceae) in the Malesian archipelago , 2012 .

[23]  J. Richardson,et al.  Biotic Evolution and Environmental Change in Southeast Asia: The Malesian floristic interchange , 2012 .

[24]  L. Rüber,et al.  Biotic Evolution and Environmental Change in Southeast Asia: Frontmatter , 2012 .

[25]  Allison J. Miller,et al.  From forest to field: perennial fruit crop domestication. , 2011, American journal of botany.

[26]  Zhekun Zhou,et al.  Quantitative reconstruction of the Late Miocene monsoon climates of southwest China: A case study of the Lincang flora from Yunnan Province , 2011 .

[27]  Jean-Luc Jannink,et al.  Population genetics of genomics-based crop improvement methods. , 2011, Trends in genetics : TIG.

[28]  Edward S. Buckler,et al.  Genetic structure and domestication history of the grape , 2011, Proceedings of the National Academy of Sciences.

[29]  M. DePristo,et al.  The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data. , 2010, Genome research.

[30]  O. Gascuel,et al.  New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. , 2010, Systematic biology.

[31]  R. Hall Southeast Asia’s changing palaeogeography , 2009 .

[32]  Eliezer E. Goldschmidt,et al.  A History of Grafting , 2009 .

[33]  Richard Durbin,et al.  Sequence analysis Fast and accurate short read alignment with Burrows – Wheeler transform , 2009 .

[34]  S. Sykes,et al.  A molecular phylogeny of the orange subfamily(Rutaceae: Aurantioideae) using nine cpDNA sequences. , 2009, American journal of botany.

[35]  M. Crisp,et al.  The age and biogeography of Citrus and the orange subfamily (Rutaceae: Aurantioideae) in Australasia and New Caledonia. , 2008, American journal of botany.

[36]  F. Gmitter,et al.  The possible role of Yunnan, China, in the origin of contemporary citrus species (rutaceae) , 1990, Economic Botany.

[37]  R. Jansen,et al.  The complete chloroplast genome sequence of Citrus sinensis (L.) Osbeck var 'Ridge Pineapple': organization and phylogenetic relationships to other angiosperms , 2006, BMC Plant Biology.

[38]  Marta Cascante,et al.  The puzzle of the Krebs citric acid cycle: Assembling the pieces of chemically feasible reactions, and opportunism in the design of metabolic pathways during evolution , 1996, Journal of Molecular Evolution.

[39]  B. Schaal,et al.  Phylogeography of plants in Taiwan and the Ryukyu archipelago , 2006 .

[40]  J. Slik,et al.  Plant distribution patterns and plate tectonics in Malesia. , 2005 .

[41]  Korbinian Strimmer,et al.  APE: Analyses of Phylogenetics and Evolution in R language , 2004, Bioinform..

[42]  K. Valdiya Emergence and evolution of Himalaya: reconstructing history in the light of recent studies , 2002 .

[43]  M. Sanderson Estimating absolute rates of molecular evolution and divergence times: a penalized likelihood approach. , 2002, Molecular biology and evolution.

[44]  P. Forster,et al.  The Leaf Oils of the Australian Species of Citrus (Rutaceae) , 2001 .

[45]  H. Voris Maps of Pleistocene sea levels in Southeast Asia: shorelines, river systems and time durations , 2000 .

[46]  E. Nicolosi,et al.  Citrus phylogeny and genetic origin of important species as investigated by molecular markers , 2000, Theoretical and Applied Genetics.

[47]  M. Hirai,et al.  A Survey and Isozyme Analysis of Wild Mandarin, Tachibana (Citrus tachibana (Mak.) Tanaka) Growing in Japan , 1990 .

[48]  H. C. Barrett,et al.  A Numerical Taxonomic Study of Affinity Relationships in Cultivated Citrus and Its Close Relatives , 1976 .

[49]  R. Scora,et al.  On the History and Origin of Citrus , 1975 .

[50]  Michael J. Hagerty,et al.  Han Yen-Chih's Chü Lu , 1923 .