Cold adaptation shapes the robustness of metabolic networks in Drosophila melanogaster
暂无分享,去创建一个
Arthur S Edison | Daniel A Hahn | Mario R Guarracino | A. Edison | T. J. Morgan | D. Hahn | M. Guarracino | Theodore J Morgan | Caroline M Williams | Miki Watanabe | Maria B Ferraro | Arezue F B Boroujerdi | Miki Watanabe | C. Williams | Arezue Boroujerdi | Maria B. Ferraro
[1] N. Metcalfe,et al. Oxidative stress as a mediator of life history trade-offs: mechanisms, measurements and interpretation. , 2009, Ecology letters.
[2] J. Overgaard,et al. Rapid cold hardening improves recovery of ion homeostasis and chill coma recovery time in the migratory locust, Locusta migratoria , 2013, Journal of Experimental Biology.
[3] M. Sinensky. Homeoviscous adaptation--a homeostatic process that regulates the viscosity of membrane lipids in Escherichia coli. , 1974, Proceedings of the National Academy of Sciences of the United States of America.
[4] M. Olive,et al. Interactions between taurine and ethanol in the central nervous system , 2002, Amino Acids.
[5] M. McCue,et al. Upper Thermal Limits of Insects Are Not the Result of Insufficient Oxygen Delivery , 2013, Physiological and Biochemical Zoology.
[6] Balázs Papp,et al. Evaluation of predicted network modules in yeast metabolism using NMR-based metabolite profiling. , 2007, Genome research.
[7] R. Steuer,et al. Metabolomic networks in plants: Transitions from pattern recognition to biological interpretation. , 2006, Bio Systems.
[8] Richard E. Lee. Low Temperature Biology of Insects: A primer on insect cold-tolerance , 2010 .
[9] K. Storey,et al. Biochemical strategies of overwintering in the gall gly larva,Eurosta solidaginis: Effect of low temperature acclimation on the activities of enzymes of intermediary metabolism , 1981, Journal of comparative physiology.
[10] T. Garland,et al. Experimental Evolution: Concepts, Methods, and Applications of Selection Experiments , 2009 .
[11] T. Lumley,et al. gplots: Various R Programming Tools for Plotting Data , 2015 .
[12] R. Lee,et al. High temperature pulses decrease indirect chilling injury and elevate ATP levels in the flesh fly, Sarcophaga crassipalpis. , 2010, Cryobiology.
[13] H. Pörtner,et al. Climate change and temperature-dependent biogeography: oxygen limitation of thermal tolerance in animals , 2001, Naturwissenschaften.
[14] J. F. Staples,et al. Metabolism and energy supply below the critical thermal minimum of a chill-susceptible insect , 2012, Journal of Experimental Biology.
[15] H. Pörtner,et al. Energy metabolism and ATP free-energy change of the intertidal wormSipunculus nudus below a critical temperature , 1996, Journal of Comparative Physiology B.
[16] S. Logan,et al. The Origin and Status of the Arrhenius Equation , 1982 .
[17] M. Wells,et al. Proline can be utilized as an energy substrate during flight of Aedes aegypti females. , 2003, Journal of insect physiology.
[18] W. Weckwerth,et al. Metabolomics: from pattern recognition to biological interpretation. , 2005, Drug discovery today.
[19] P. Mendes,et al. The origin of correlations in metabolomics data , 2005, Metabolomics.
[20] V. Loeschcke,et al. Changes in membrane lipid composition following rapid cold hardening in Drosophila melanogaster. , 2005, Journal of insect physiology.
[21] V. Košťál,et al. On the nature of pre-freeze mortality in insects: water balance, ion homeostasis and energy charge in the adults of Pyrrhocoris apterus , 2004, Journal of Experimental Biology.
[22] D. Renault,et al. Metabolic rate and oxidative stress in insects exposed to low temperature thermal fluctuations. , 2011, Comparative biochemistry and physiology. Part A, Molecular & integrative physiology.
[23] J. Overgaard,et al. Rapid cold hardening improves recovery of ion homeostasis 1 and chill coma recovery in the migratory locust Locusta 2 migratoria , 2012 .
[24] Ziv Bar-Joseph,et al. STEM: a tool for the analysis of short time series gene expression data , 2006, BMC Bioinformatics.
[25] Ralf Steuer,et al. Review: On the analysis and interpretation of correlations in metabolomic data , 2006, Briefings Bioinform..
[26] D. Renault,et al. Combined transcriptomic and metabolomic approach uncovers molecular mechanisms of cold tolerance in a temperate flesh fly. , 2012, Physiological genomics.
[27] John R. B. Lighton. Measuring metabolic rates , 2008 .
[28] D. Chinkes,et al. Isotope Tracers in Metabolic Research: Principles and Practice of Kinetic Analysis , 2004 .
[29] D. Yamamoto,et al. Changes in Temperature Preferences and Energy Homeostasis in Dystroglycan Mutants , 2009, Science.
[30] A. Zera. Microevolution of intermediary metabolism: evolutionary genetics meets metabolic biochemistry , 2011, Journal of Experimental Biology.
[31] V. Loeschcke,et al. Metabolomic profiling of rapid cold hardening and cold shock in Drosophila melanogaster. , 2007, Journal of insect physiology.
[32] H. N. Tucker,et al. Antioxidant characteristics of L-histidine , 1998 .
[33] Vladimir N. Vapnik,et al. The Nature of Statistical Learning Theory , 2000, Statistics for Engineering and Information Science.
[34] V. Appanna,et al. Histidine is a source of the antioxidant, alpha-ketoglutarate, in Pseudomonas fluorescens challenged by oxidative stress. , 2010, FEMS microbiology letters.
[35] J. Guh,et al. Effect of taurine on advanced glycation end products-induced hypertrophy in renal tubular epithelial cells. , 2008, Toxicology and applied pharmacology.
[36] B. Sinclair,et al. The role of the gut in insect chilling injury: cold-induced disruption of osmoregulation in the fall field cricket, Gryllus pennsylvanicus , 2011, Journal of Experimental Biology.
[37] Metabolomic analysis of the selection response of Drosophila melanogaster to environmental stress: are there links to gene expression and phenotypic traits? , 2013, Naturwissenschaften.
[38] V. Košťál,et al. Seasonal acquisition of chill tolerance and restructuring of membrane glycerophospholipids in an overwintering insect: triggering by low temperature, desiccation and diapause progression , 2006, Journal of Experimental Biology.
[39] V. Košťál,et al. Hyperprolinemic larvae of the drosophilid fly, Chymomyza costata, survive cryopreservation in liquid nitrogen , 2011, Proceedings of the National Academy of Sciences.
[40] Trey Ideker,et al. Cytoscape 2.8: new features for data integration and network visualization , 2010, Bioinform..
[41] D. Renault,et al. Seasonal changes of free amino acids and thermal hysteresis in overwintering heteropteran insect, Pyrrhocoris apterus. , 2011, Comparative biochemistry and physiology. Part A, Molecular & integrative physiology.
[42] S. Kagamimori,et al. Role of taurine supplementation to prevent exercise-induced oxidative stress in healthy young men , 2004, Amino Acids.
[43] Oliver Mf. Interactions between taurine and ethanol in the central nervous system. , 2002 .
[44] B. Sinclair,et al. Upper thermal tolerance and oxygen limitation in terrestrial arthropods , 2004, Journal of Experimental Biology.
[45] J. F. Staples,et al. Reestablishment of ion homeostasis during chill-coma recovery in the cricket Gryllus pennsylvanicus , 2012, Proceedings of the National Academy of Sciences.
[46] M. Rose,et al. Experimental evolution with Drosophila. , 2009, American journal of physiology. Regulatory, integrative and comparative physiology.
[47] K. Storey,et al. OXIDATIVE STRESS AND ANTIOXIDANTS IN STRESS AND RECOVERY OF COLD-HARDY INSECTS , 1998 .
[48] Kevin R. Thornton,et al. The Drosophila melanogaster Genetic Reference Panel , 2012, Nature.
[49] J. Overgaard,et al. Feeding impairs chill coma recovery in the migratory locust (Locusta migratoria). , 2013, Journal of insect physiology.
[50] S. Chown,et al. Oxygen limitation and thermal tolerance in two terrestrial arthropod species , 2010, Journal of Experimental Biology.
[51] Elizabeth K. Fly,et al. Physiological energetics and biogeographic range limits of three congeneric mussel species , 2012, Oecologia.
[52] M. Kimura,et al. Selection for rapid and slow recovery from chill- and heat-coma in Drosophila melanogaster , 2008 .
[53] K. Storey. Strategies for exploration of freeze responsive gene expression: advances in vertebrate freeze tolerance. , 2004, Cryobiology.
[54] R Core Team,et al. R: A language and environment for statistical computing. , 2014 .
[55] K. Jacobson,et al. Phase transitions and phase separations in phospholipid membranes induced by changes in temperature, pH, and concentration of bivalent cations. , 1975, Biochemistry.
[56] N. Keiding,et al. The role of frailty models and accelerated failure time models in describing heterogeneity due to omitted covariates. , 1997, Statistics in medicine.
[57] R. Huey,et al. The fly that came in from the cold: geographic variation of recovery time from low‐temperature exposure in Drosophila subobscura , 2003 .
[58] B. Sinclair,et al. Mechanisms underlying insect chill-coma. , 2011, Journal of insect physiology.
[59] Philippe Lambert,et al. Parametric accelerated failure time models with random effects and an application to kidney transplant survival , 2004, Statistics in medicine.
[60] B. Sinclair,et al. Variation in Thermal Performance among Insect Populations* , 2012, Physiological and Biochemical Zoology.
[61] T. Stone,et al. Endogenous kynurenines as targets for drug discovery and development , 2002, Nature Reviews Drug Discovery.
[62] A. Clarke,et al. Why does metabolism scale with temperature , 2004 .
[63] A. Gibbs,et al. Laboratory selection for the comparative physiologist. , 1999, The Journal of experimental biology.
[64] D. Renault,et al. Cold exposure and associated metabolic changes in adult tropical beetles exposed to fluctuating thermal regimes , 2007, The FEBS journal.
[65] R.. THERMAL ADAPTATION IN BIOLOGICAL MEMBRANES : Is Homeoviscous Adaptation the Explanation ? , 2002 .
[66] P. Amato,et al. Energy Metabolism Response to Low-Temperature and Frozen Conditions in Psychrobacter cryohalolentis , 2008, Applied and Environmental Microbiology.
[67] K. Mohammad,et al. Prognostic factors of survival time after hematopoietic stem cell transplant in acute lymphoblastic leukemia patients: Cox proportional hazard versus accelerated failure time models , 2008, Journal of experimental & clinical cancer research : CR.
[68] Chih-Jen Lin,et al. LIBSVM: A library for support vector machines , 2011, TIST.
[69] Simon Tavaré,et al. Normalization of metabolomics data with applications to correlation maps , 2014, Bioinform..
[70] B. Sinclair,et al. Membrane remodeling and glucose in Drosophila melanogaster: a test of rapid cold-hardening and chilling tolerance hypotheses. , 2009, Journal of insect physiology.
[71] D. Shain,et al. Four kingdoms on glacier ice: convergent energetic processes boost energy levels as temperatures fall , 2004, Proceedings of the Royal Society of London. Series B: Biological Sciences.
[72] D. Renault,et al. Dietary sugars affect cold tolerance of Drosophila melanogaster , 2013, Metabolomics.
[73] V. Košťál,et al. Long-Term Cold Acclimation Extends Survival Time at 0°C and Modifies the Metabolomic Profiles of the Larvae of the Fruit Fly Drosophila melanogaster , 2011, PloS one.
[74] P. Krogh,et al. Effects of acclimation temperature on thermal tolerance and membrane phospholipid composition in the fruit fly Drosophila melanogaster. , 2008, Journal of insect physiology.
[75] G. Bai,et al. NMR metabolomic analysis of caco-2 cell differentiation. , 2009, Journal of proteome research.
[76] R. Suarez,et al. Metabolism in the age of ‘omes’ , 2012, Journal of Experimental Biology.
[77] A. M. Gil,et al. Analytical approaches toward successful human cell metabolome studies by NMR spectroscopy. , 2009, Analytical chemistry.
[78] Kevin J Gaston,et al. Climate, energy and diversity , 2006, Proceedings of the Royal Society B: Biological Sciences.
[79] Korbinian Strimmer,et al. From correlation to causation networks: a simple approximate learning algorithm and its application to high-dimensional plant gene expression data , 2007, BMC Systems Biology.
[80] D. Renault,et al. Exploring the plastic response to cold acclimation through metabolomics , 2012 .
[81] R. Schwarcz,et al. The Kynurenine Pathway Modulates Neurodegeneration in a Drosophila Model of Huntington's Disease , 2011, Current Biology.
[82] S. Goto,et al. Fatty acids of membrane phospholipids in Drosophila melanogaster lines showing rapid and slow recovery from chill coma. , 2010, Biochemical and biophysical research communications.
[83] John R. B. Lighton,et al. Measuring Metabolic Rates , 2008 .
[84] Mark A. Smith,et al. Carnosine: a versatile antioxidant and antiglycating agent. , 2005, Science of aging knowledge environment : SAGE KE.
[85] D. Denlinger,et al. Shifts in the carbohydrate, polyol, and amino acid pools during rapid cold-hardening and diapause-associated cold-hardening in flesh flies (Sarcophaga crassipalpis): a metabolomic comparison , 2007, Journal of Comparative Physiology B.
[86] P. Grambsch,et al. A Package for Survival Analysis in S , 1994 .
[87] N. Bouchemal,et al. Metabolomic profiling with NMR discriminates between biphosphonate and doxorubicin effects on B16 melanoma cells , 2010, NMR in biomedicine.
[88] E. C. Smith. The buffering of muscle in rigor; protein, phosphate and carnosine , 1938, The Journal of physiology.