BioHackathon 2015: Semantics of data for life sciences and reproducible research

We report on the activities of the 2015 edition of the BioHackathon, an annual event that brings together researchers and developers from around the world to develop tools and technologies that promote the reusability of biological data. We discuss issues surrounding the representation, publication, integration, mining and reuse of biological data and metadata across a wide range of biomedical data types of relevance for the life sciences, including chemistry, genotypes and phenotypes, orthology and phylogeny, proteomics, genomics, glycomics, and metabolomics. We describe our progress to address ongoing challenges to the reusability and reproducibility of research results, and identify outstanding issues that continue to impede the progress of bioinformatics research. We share our perspective on the state of the art, continued challenges, and goals for future research and development for the life sciences Semantic Web.

Akira R. Kinjo | Núria Queralt-Rosinach | Michel Dumontier | Hongyan Wu | Tudor Groza | Jesualdo Tomás Fernández-Breis | Kevin Bretonnel Cohen | Takeshi Kawashima | Jin-Dong Kim | Benedict Paten | Yasunori Yamamoto | Atsuko Yamaguchi | Jee-Hyub Kim | Toshihisa Takagi | Eric W. Deutsch | Yuki Moriya | Mark D. Wilkinson | Shujiro Okuda | Akiyasu C. Yoshizawa | Kouji Kozaki | Pjotr Prins | Takatomo Fujisawa | Shuichi Kawashima | Takeru Nakazato | Hidemasa Bono | Naoki Nishida | Hirokazu Chiba | Ikuo Uchiyama | Tazro Ohta | Hiroshi Mori | Kozo Nishida | Rutger A. Vos | Erick Antezana | Toshiaki Katayama | Terue Takatsuki | Chih-Hsuan Wei | Kazuharu Arakawa | Masaaki Matsubara | Daisuke Shinmachi | Issaku Yamada | Tatsuya Kushida | Shin Kawano | Ryota Yamanaka | Nick Juty | Nobuyuki P. Aoki | Alexander Garcia | Jerven T. Bolleman | Bruno Vieira | Mark Thompson | Robert Hoehndorf | Yuki Naito | Evan E Bolton | Gang Fu | Attayeb Mohsen | Evan E. Bolton | Kenjiro Kosaki | Shinya Suzuki | Raoul J.P. Bonnal | Kotone Itaya | Hiroyo Nishide | Soichi Ogishima | Toshiaki Tokimatsu | Kees Burger | Naohisa Goto | Kieron Taylor | Thomas Lütteke | Jean-Luc Perret | Hiroyuki Mishima | Joe Miyamoto | Peter Amstutz | Kazutoshi Yoshitake | Masaaki Kotera | Atsushi Fukushima | Colin Hercus | Sadahiro Kumagai | Jeremy Nguyen-Xuan | Philip Prathipati | Tsuyosi Tabata | Shujiro Okuda | K. Cohen | Yasunori Yamamoto | T. Takagi | T. Groza | Hongyan Wu | B. Paten | H. Bono | H. Chiba | E. Deutsch | Chih-Hsuan Wei | R. Vos | Y. Naito | N. Juty | Masaaki Kotera | J. Fernández-breis | Jin-Dong Kim | Mark Thompson | M. Dumontier | T. Tokimatsu | A. Kinjo | K. Taylor | R. Hoehndorf | Toshiaki Katayama | S. Kawashima | A. Fukushima | K. Arakawa | P. Amstutz | N. Queralt-Rosinach | P. Prathipati | P. Prins | Naohisa Goto | T. Fujisawa | Kozo Nishida | K. Kosaki | Jeremy NguyenXuan | S. Ogishima | Jee Hyub Kim | S. Kawano | Yuki Moriya | Thomas Lütteke | K. Yoshitake | I. Uchiyama | Attayeb Mohsen | Hiroshi Mori | T. Kawashima | Kouji Kozaki | Gang Fu | Takeru Nakazato | K. Burger | Atsuko Yamaguchi | Terue Takatsuki | R. Bonnal | Hiroyo Nishide | Tazro Ohta | Erick Antezana | H. Mishima | Tatsuya Kushida | Masaaki Matsubara | Issaku Yamada | Daisuke Shinmachi | Naoki Nishida | J. Perret | Shinya Suzuki | C. Hercus | Alex García | Joe Miyamoto | Kotone Itaya | Ryota Yamanaka | Sadahiro Kumagai | T. Tabata | Bruno Vieira | A. C. Yoshizawa | Takatomo Fujisawa

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