Non-IgE-reactive allergen peptides deteriorate the skin barrier in house dust mite-sensitized atopic dermatitis patients

Atopic dermatitis (AD) is a chronic inflammatory skin disease characterized by type 2 cytokine-driven skin inflammation and epithelial barrier dysfunction. The latter is believed to allow the increased penetration of chemicals, toxins, and allergens into the skin. House dust mite allergens, particularly Der p 2, are important triggers in sensitized individuals with AD; the precise actions of these allergens in epithelial biology remain, however, incompletely understood. In this study, we compared the effects of the protein allergen Der p 2 and a mix of non-IgE-reactive Der p 2 peptides on skin cells using patch tests in AD patients and healthy participants. We then analyzed mRNA expression profiles of keratinocytes by single-cell RNA-sequencing. We report that existing barrier deficiencies in the non-lesional skin of AD patients allow deep penetration of Der p 2 and its peptides, leading to local microinflammation. Der p 2 protein specifically upregulated genes involved in the innate immune system, stress, and danger signals in suprabasal KC. Der p 2 peptides further downregulated skin barrier genes, in particular the expression of genes involved in cell–matrix and cell–cell adhesion. Peptides also induced genes involved in hyperproliferation and caused disturbances in keratinocyte differentiation. Furthermore, inflammasome-relevant genes and IL18 were overexpressed, while KRT1 was downregulated. Our data suggest that Der p 2 peptides contribute to AD initiation and exacerbation by augmenting hallmark features of AD, such as skin inflammation, barrier disruption, and hyperplasia of keratinocytes.

[1]  R. Fässler,et al.  In mitosis integrins reduce adhesion to extracellular matrix and strengthen adhesion to adjacent cells , 2023, Nature communications.

[2]  R. Nair,et al.  Revisiting the significance of keratin expression in complex epithelia , 2022, bioRxiv.

[3]  Adrian J. Green,et al.  LGR5 is a conserved marker of hair follicle stem cells in multiple species and is present early and throughout follicle morphogenesis , 2022, Scientific Reports.

[4]  C. Akdis,et al.  Epithelial barrier hypothesis and the development of allergic and autoimmune diseases , 2022, Allergo Journal International.

[5]  C. Leprince,et al.  Revisiting the Roles of Filaggrin in Atopic Dermatitis , 2022, International journal of molecular sciences.

[6]  M. Cork,et al.  Type 2 Inflammation Contributes to Skin Barrier Dysfunction in Atopic Dermatitis , 2022, JID innovations : skin science from molecules to population health.

[7]  Hideki Nakamura,et al.  Wnt/β-catenin signaling stabilizes hemidesmosomes in keratinocytes. , 2021, The Journal of investigative dermatology.

[8]  C. Akdis,et al.  Dysregulation of the epithelial barrier by environmental and other exogenous factors , 2021, Contact dermatitis.

[9]  W. Weninger,et al.  The Extracellular Matrix in Skin Inflammation and Infection , 2021, Frontiers in Cell and Developmental Biology.

[10]  Yao‐Hua Song,et al.  Inflammasomes as therapeutic targets in human diseases , 2021, Signal Transduction and Targeted Therapy.

[11]  C. Akdis Does the epithelial barrier hypothesis explain the increase in allergy, autoimmunity and other chronic conditions? , 2021, Nature Reviews Immunology.

[12]  S. Teichmann,et al.  Developmental cell programs are co-opted in inflammatory skin disease , 2021, Science.

[13]  Adam L. Maclean,et al.  Single cell transcriptomics of human epidermis identifies basal stem cell transition states , 2020, Nature Communications.

[14]  S. Langan,et al.  Atopic dermatitis , 2020, The Lancet.

[15]  Lihua Zhang,et al.  Inference and analysis of cell-cell communication using CellChat , 2020, Nature Communications.

[16]  D. Leung,et al.  Cutaneous barrier dysfunction in allergic diseases. , 2020, The Journal of allergy and clinical immunology.

[17]  Adam L. Maclean,et al.  Defining Epidermal Basal Cell States during Skin Homeostasis and Wound Healing Using Single-Cell Transcriptomics , 2019, bioRxiv.

[18]  R. Valenta,et al.  A hypoallergenic peptide mix containing T cell epitopes of the clinically relevant house dust mite allergens , 2019, Allergy.

[19]  Xinzhong Dong,et al.  House dust mites activate nociceptor-mast cell clusters to drive type 2 skin inflammation , 2019, Nature Immunology.

[20]  Srikala Raghavan,et al.  Unraveling the ECM-Immune Cell Crosstalk in Skin Diseases , 2019, Front. Cell Dev. Biol..

[21]  Samantha Riesenfeld,et al.  EmptyDrops: distinguishing cells from empty droplets in droplet-based single-cell RNA sequencing data , 2019, Genome Biology.

[22]  R. Satija,et al.  Normalization and variance stabilization of single-cell RNA-seq data using regularized negative binomial regression , 2019, Genome Biology.

[23]  F. Ginhoux,et al.  The immunological anatomy of the skin , 2018, Nature reviews. Immunology.

[24]  Fan Zhang,et al.  Fast, sensitive, and accurate integration of single cell data with Harmony , 2018, bioRxiv.

[25]  C. Flohr,et al.  Atopic dermatitis: the skin barrier and beyond , 2018, The British journal of dermatology.

[26]  Charles J. Vaske,et al.  Transcriptional Programming of Normal and Inflamed Human Epidermis at Single-Cell Resolution , 2018, Cell reports.

[27]  Erik Sundström,et al.  RNA velocity of single cells , 2018, Nature.

[28]  M. Suárez-Fariñas,et al.  Dust mite induces multiple polar T cell axes in human skin , 2017, Clinical and experimental allergy : journal of the British Society for Allergy and Clinical Immunology.

[29]  B. Jahn-Schmid,et al.  Allergens with Protease Activity from House Dust Mites , 2017, International journal of molecular sciences.

[30]  Barbara B. Shih,et al.  Derivation of marker gene signatures from human skin and their use in the interpretation of the transcriptional changes associated with dermatological disorders , 2017, The Journal of pathology.

[31]  Jeffrey M. Wilson,et al.  The Skin as a Route of Allergen Exposure: Part I. Immune Components and Mechanisms , 2017, Current Allergy and Asthma Reports.

[32]  S. Brodesser,et al.  Essential Role of Polarity Protein Par3 for Epidermal Homeostasis through Regulation of Barrier Function, Keratinocyte Differentiation, and Stem Cell Maintenance. , 2016, The Journal of investigative dermatology.

[33]  John C Marioni,et al.  A step-by-step workflow for low-level analysis of single-cell RNA-seq data with Bioconductor , 2016, F1000Research.

[34]  M. Labouesse,et al.  Hemidesmosome integrity protects the colon against colitis and colorectal cancer , 2016, Gut.

[35]  Stephan Weidinger,et al.  Atopic dermatitis , 2016, The Lancet.

[36]  L. Stein,et al.  The Reactome pathway Knowledgebase , 2015, Nucleic Acids Res..

[37]  A. Sonnenberg,et al.  The molecular architecture of hemidesmosomes, as revealed with super-resolution microscopy , 2015, Journal of Cell Science.

[38]  A. Regev,et al.  Spatial reconstruction of single-cell gene expression , 2015, Nature Biotechnology.

[39]  O. Skalli,et al.  Alpha actinin-1 regulates cell-matrix adhesion organization in keratinocytes: consequences for skin cell motility , 2014, The Journal of investigative dermatology.

[40]  Jingyuan Deng,et al.  SERPINB3/B4 contributes to early inflammation and barrier dysfunction in an experimental murine model of atopic dermatitis , 2014, The Journal of investigative dermatology.

[41]  R. Tsuboi,et al.  Keratinocyte-specific mesotrypsin contributes to the desquamation process via kallikrein activation and LEKTI degradation. , 2014, The Journal of investigative dermatology.

[42]  S. Akira,et al.  Epicutaneously applied Der p 2 induces a strong TH2-biased antibody response in C57BL/6 mice, independent of functional TLR4 , 2014, Allergy.

[43]  A. Balmain,et al.  Keratin 16 regulates innate immunity in response to epidermal barrier breach , 2013, Proceedings of the National Academy of Sciences.

[44]  N. Novak,et al.  Immunology of atopic eczema: overcoming the Th1/Th2 paradigm , 2013, Allergy.

[45]  Edward Y. Chen,et al.  Enrichr: interactive and collaborative HTML5 gene list enrichment analysis tool , 2013, BMC Bioinformatics.

[46]  M. Trotter,et al.  Single-cell gene expression profiling reveals functional heterogeneity of undifferentiated human epidermal cells , 2013, Development.

[47]  M. Suárez-Fariñas,et al.  Progressive activation of T(H)2/T(H)22 cytokines and selective epidermal proteins characterizes acute and chronic atopic dermatitis. , 2012, The Journal of allergy and clinical immunology.

[48]  P. Coulombe,et al.  Keratin intermediate filament proteins – novel regulators of inflammation and immunity in skin , 2012, Journal of Cell Science.

[49]  Joachim L. Schultze,et al.  Keratin 1 maintains skin integrity and participates in an inflammatory network in skin through interleukin-18 , 2012, Journal of Cell Science.

[50]  A. Muroyama,et al.  Polarity and stratification of the epidermis. , 2012, Seminars in cell & developmental biology.

[51]  Johannes E. Schindelin,et al.  Fiji: an open-source platform for biological-image analysis , 2012, Nature Methods.

[52]  P. Coulombe,et al.  A wound-induced keratin inhibits Src activity during keratinocyte migration and tissue repair , 2012, The Journal of cell biology.

[53]  B. Igyártó,et al.  Early immune events in the induction of allergic contact dermatitis , 2012, Nature Reviews Immunology.

[54]  A. Bowcock,et al.  Nonlesional atopic dermatitis skin is characterized by broad terminal differentiation defects and variable immune abnormalities. , 2011, The Journal of allergy and clinical immunology.

[55]  T. Beaty,et al.  Tight junction defects in patients with atopic dermatitis. , 2011, The Journal of allergy and clinical immunology.

[56]  K. Sayama,et al.  Mite allergen is a danger signal for the skin via activation of inflammasome in keratinocytes. , 2011, The Journal of allergy and clinical immunology.

[57]  J. Schröder,et al.  The antimicrobial protein psoriasin (S100A7) is upregulated in atopic dermatitis and after experimental skin barrier disruption. , 2009, The Journal of investigative dermatology.

[58]  E. Fuchs,et al.  Epidermal homeostasis: a balancing act of stem cells in the skin , 2009, Nature Reviews Molecular Cell Biology.

[59]  I. Kockum,et al.  Cornulin, a marker of late epidermal differentiation, is down‐regulated in eczema , 2009, Allergy.

[60]  R. Hegde,et al.  Allergenicity resulting from functional mimicry of a Toll-like receptor complex protein , 2008, Nature.

[61]  N. Papadopoulos,et al.  Reduction of the in vivo allergenicity of Der p 2, the major house-dust mite allergen, by genetic engineering. , 2008, Molecular immunology.

[62]  A. Utani,et al.  T‐cadherin enhances cell–matrix adhesiveness by regulating β1 integrin trafficking in cutaneous squamous carcinoma cells , 2007, Genes to cells : devoted to molecular & cellular mechanisms.

[63]  K. Mitsuishi,et al.  The squamous cell carcinoma antigens as relevant biomarkers of atopic dermatitis , 2005, Clinical and experimental allergy : journal of the British Society for Allergy and Clinical Immunology.

[64]  John G. Collard,et al.  The Rac activator Tiam1 controls tight junction biogenesis in keratinocytes through binding to and activation of the Par polarity complex , 2005, The Journal of cell biology.

[65]  Rainer Schmidt,et al.  The cornified envelope: a model of cell death in the skin , 2005, Nature Reviews Molecular Cell Biology.

[66]  P. Coulombe,et al.  Intermediate filaments and tissue repair. , 2004, Experimental cell research.

[67]  Y. Ohtsuki,et al.  Expression of T-cadherin in Basal keratinocytes of skin. , 2002, The Journal of investigative dermatology.

[68]  B. Snel,et al.  STRING: a web-server to retrieve and display the repeatedly occurring neighbourhood of a gene. , 2000, Nucleic acids research.

[69]  H. Numabe,et al.  Squamous cell carcinoma‐related antigen in children with atopic dermatitis , 2000, Pediatrics international : official journal of the Japan Pediatric Society.

[70]  S. Akira,et al.  IL-18, although antiallergic when administered with IL-12, stimulates IL-4 and histamine release by basophils. , 1999, Proceedings of the National Academy of Sciences of the United States of America.

[71]  D. Garrod,et al.  Desmosomes and hemidesmosomes. , 1993, Current opinion in cell biology.

[72]  W. Carter,et al.  The role of integrins alpha 2 beta 1 and alpha 3 beta 1 in cell-cell and cell-substrate adhesion of human epidermal cells , 1990, Journal of Cell Biology.

[73]  P. Zeeuwen Epidermal differentiation: the role of proteases and their inhibitors. , 2004, European journal of cell biology.