Lethal mutagenesis of HIV with mutagenic nucleoside analogs.

The human immunodeficiency virus (HIV) replicates its genome and mutates at exceptionally high rates. As a result, the virus is able to evade immunological and chemical antiviral agents. We tested the hypothesis that a further increase in the mutation rate by promutagenic nucleoside analogs would abolish viral replication. We evaluated deoxynucleoside analogs for lack of toxicity to human cells, incorporation by HIV reverse transcriptase, resistance to repair when incorporated into the DNA strand of an RNA.DNA hybrid, and mispairing at high frequency. Among the candidates tested, 5-hydroxydeoxycytidine (5-OH-dC) fulfilled these criteria. In seven of nine experiments, the presence of this analog resulted in the loss of viral replicative potential after 9-24 sequential passages of HIV in human CEM cells. In contrast, loss of viral replication was not observed in 28 control cultures passaged in the absence of the nucleoside analog, nor with other analogs tested. Sequence analysis of a portion of the HIV reverse transcriptase gene demonstrated a disproportionate increase in G --> A substitutions, mutations predicted to result from misincorporation of 5-OH-dC into the cDNA during reverse transcription. Thus, "lethal mutagenesis" driven by the class of deoxynucleoside analogs represented by 5-OH-dC could provide a new approach to treating HIV infections and, potentially, other viral infections.

[1]  David A. Steinhauer,et al.  Mutation Frequencies at Defined Single Codon Sites in Vesicular Stomatitis Virus and Poliovirus Can Be Increased Only Slightly by Chemical Mutagenesis , 1990, Journal of virology.

[2]  D. A. Kreutzer,et al.  Oxidized, deaminated cytosines are a source of C --> T transitions in vivo. , 1998, Proceedings of the National Academy of Sciences of the United States of America.

[3]  B. Ames,et al.  Endogenous oxidative damage of deoxycytidine in DNA. , 1992, Proceedings of the National Academy of Sciences of the United States of America.

[4]  L. Samson,et al.  Relative efficiencies of the bacterial, yeast, and human DNA methyltransferases for the repair of O6-methylguanine and O4-methylthymine. Suggestive evidence for O4-methylthymine repair by eukaryotic methyltransferases. , 1991, The Journal of biological chemistry.

[5]  L. M. Mansky,et al.  Lower in vivo mutation rate of human immunodeficiency virus type 1 than that predicted from the fidelity of purified reverse transcriptase , 1995, Journal of virology.

[6]  L. Loeb,et al.  Oxidative DNA Damage and Mutagenesis , 1998 .

[7]  H. Temin Evolution of cancer genes as a mutation-driven process. , 1988, Cancer research.

[8]  L. Loeb,et al.  Reverse chemical mutagenesis: identification of the mutagenic lesions resulting from reactive oxygen species-mediated damage to DNA. , 1994, Proceedings of the National Academy of Sciences of the United States of America.

[9]  J. Coffin,et al.  HIV population dynamics in vivo: implications for genetic variation, pathogenesis, and therapy , 1995, Science.

[10]  K Bebenek,et al.  The accuracy of reverse transcriptase from HIV-1. , 1988, Science.

[11]  L. Loeb,et al.  Mutagenic potential of O4-methylthymine in vivo determined by an enzymatic approach to site-specific mutagenesis. , 1986, Proceedings of the National Academy of Sciences of the United States of America.

[12]  L. Loeb,et al.  Incorporation of the Guanosine Triphosphate Analogs 8-Oxo-dGTP and 8-NH2-dGTP by Reverse Transcriptases and Mammalian DNA Polymerases* , 1997, The Journal of Biological Chemistry.

[13]  A. Rodrigo,et al.  Genetic subtyping of human immunodeficiency virus using a heteroduplex mobility assay. , 1995, PCR methods and applications.

[14]  J. Essigmann,et al.  Intrachromosomal probes for mutagenesis by alkylated DNA bases replicated in mammalian cells: a comparison of the mutagenicities of O4-methylthymine and O6-methylguanine in cells with different DNA repair backgrounds. , 1996, Chemical research in toxicology.

[15]  M. Eigen Viral quasi species. , 1993 .

[16]  H. Buc,et al.  Reverse transcriptases and genomic variability: the accuracy of DNA replication is enzyme specific and sequence dependent. , 1990, The EMBO journal.

[17]  B. Chesebro,et al.  Development of a sensitive quantitative focal assay for human immunodeficiency virus infectivity , 1988, Journal of virology.

[18]  M. Eigen,et al.  The origin of genetic information: viruses as models. , 1993, Gene.

[19]  J. Swenberg,et al.  Differential repair of O6-methylguanine in DNA of rat hepatocytes and nonparenchymal cells , 1980, Nature.

[20]  W. Folkman,et al.  Evidence for the mutagenic potential of the vinyl chloride induced adduct, N2, 3-etheno-deoxyguanosine, using a site-directed kinetic assay. , 1991, Carcinogenesis.

[21]  B. Preston,et al.  Mechanisms of retroviral mutation. , 1996, Trends in microbiology.

[22]  T. Léveillard,et al.  Functional interactions between p53 and the TFIIH complex are affected by tumour‐associated mutations. , 1996, The EMBO journal.

[23]  E. Domingo,et al.  RNA virus mutations and fitness for survival. , 1997, Annual review of microbiology.

[24]  J. Fitzgibbon,et al.  A new type of G-->A hypermutation affecting human immunodeficiency virus. , 1993, AIDS research and human retroviruses.

[25]  R. S. Foote,et al.  Base-pairing properties of O6-methylguanine in template DNA during in vitro DNA replication. , 1984, The Journal of biological chemistry.

[26]  Jianping Ding,et al.  Locations of anti-AIDS drug binding sites and resistance mutations in the three-dimensional structure of HIV-1 reverse transcriptase. Implications for mechanisms of drug inhibition and resistance. , 1994, Journal of molecular biology.

[27]  S. Wain-Hobson,et al.  Hypermutagenesis of RNA using human immunodeficiency virus type 1 reverse transcriptase and biased dNTP concentrations. , 1994, Proceedings of the National Academy of Sciences of the United States of America.

[28]  J. Essigmann,et al.  Site-specifically modified oligodeoxynucleotides as probes for the structural and biological effects of DNA-damaging agents. , 1988, Chemical research in toxicology.

[29]  R. Montesano,et al.  Repair of O4-methyldeoxythymidine residues in DNA by mammalian liver extracts. , 1985, Carcinogenesis.

[30]  L. Loeb,et al.  Inefficient repair of RNA x DNA hybrids. , 1997, European journal of biochemistry.

[31]  A. Perelson,et al.  HIV-1 Dynamics in Vivo: Virion Clearance Rate, Infected Cell Life-Span, and Viral Generation Time , 1996, Science.

[32]  G. A. van der Marel,et al.  Role of nucleotide excision repair in processing of O4-alkylthymines in human cells. , 1994, The Journal of biological chemistry.

[33]  L. Loeb,et al.  Fidelity of HIV-1 reverse transcriptase. , 1988, Science.

[34]  J. Chern,et al.  Potentiation of 2'-deoxyguanosine cytotoxicity by a novel inhibitor of purine nucleoside phosphorylase, 8-amino-9-benzylguanine. , 1986, Cancer research.

[35]  D. Xing,et al.  Purification of a mammalian homologue of Escherichia coli endonuclease III: identification of a bovine pyrimidine hydrate-thymine glycol DNAse/AP lyase by irreversible cross linking to a thymine glycol-containing oligoxynucleotide. , 1996, Biochemistry.

[36]  E. Domingo,et al.  Pol gene quasispecies of human immunodeficiency virus: mutations associated with drug resistance in virus from patients undergoing no drug therapy , 1995, Journal of virology.

[37]  R. Cunningham,et al.  New substrates for old enzymes. 5-Hydroxy-2'-deoxycytidine and 5-hydroxy-2'-deoxyuridine are substrates for Escherichia coli endonuclease III and formamidopyrimidine DNA N-glycosylase, while 5-hydroxy-2'-deoxyuridine is a substrate for uracil DNA N-glycosylase. , 1994, The Journal of biological chemistry.

[38]  M. Eigen,et al.  Statistical geometry on sequence space. , 1990, Methods in enzymology.

[39]  L. Loeb,et al.  Mutagenesis by human immunodeficiency virus reverse transcriptase: incorporation of O6-methyldeoxyguanosine triphosphate. , 1997, Mutation research.

[40]  L. Loeb,et al.  Mechanisms of mutation by oxidative DNA damage: reduced fidelity of mammalian DNA polymerase beta. , 1993, Biochemistry.

[41]  M. Boosalis,et al.  DNA polymerase insertion fidelity. Gel assay for site-specific kinetics. , 1987, The Journal of biological chemistry.

[42]  Susan S. Wallace,et al.  Major oxidative products of cytosine, 5-hydroxycytosine and 5- hydroxyuracil, exhibit sequence context-dependent mispairing in vitro , 1994, Nucleic Acids Res..

[43]  F. Grosse,et al.  Purification and characterization of two DNA helicases from calf thymus nuclei. , 1991, The Journal of biological chemistry.