Essential Proteins Discovery from Weighted Protein Interaction Networks
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Yi Pan | Huan Wang | Jianxin Wang | Min Li | Jianxin Wang | Min Li | Yi Pan | Huan Wang
[1] Ronald W. Davis,et al. Functional characterization of the S. cerevisiae genome by gene deletion and parallel analysis. , 1999, Science.
[2] A. Barabasi,et al. Network biology: understanding the cell's functional organization , 2004, Nature Reviews Genetics.
[3] Shivaram Narayanan,et al. The Betweenness Centrality Of Biological Networks , 2005 .
[4] Dmitrij Frishman,et al. MIPS: analysis and annotation of proteins from whole genomes in 2005 , 2005, Nucleic Acids Res..
[5] Matthew W. Hahn,et al. Comparative genomics of centrality and essentiality in three eukaryotic protein-interaction networks. , 2005, Molecular biology and evolution.
[6] Dominique Martinez,et al. A Model of Stimulus-Specific Neural Assemblies in the Insect Antennal Lobe , 2008, PLoS Comput. Biol..
[7] Yang Dai,et al. Assessing protein similarity with Gene Ontology and its use in subnuclear localization prediction , 2006, BMC Bioinformatics.
[8] Philip Resnik,et al. Using Information Content to Evaluate Semantic Similarity in a Taxonomy , 1995, IJCAI.
[9] M. Gerstein,et al. Genomic analysis of essentiality within protein networks. , 2004, Trends in genetics : TIG.
[10] A. Barabasi,et al. Lethality and centrality in protein networks , 2001, Nature.
[11] Roded Sharan,et al. QPath: a method for querying pathways in a protein-protein interaction network , 2006, BMC Bioinformatics.
[12] Karl W. Broman,et al. A postgenomic method for predicting essential genes at subsaturation levels of mutagenesis: Application to Mycobacterium tuberculosis , 2003, Proceedings of the National Academy of Sciences of the United States of America.
[13] Dekang Lin,et al. An Information-Theoretic Definition of Similarity , 1998, ICML.
[14] J. A. Rodríguez-Velázquez,et al. Subgraph centrality in complex networks. , 2005, Physical review. E, Statistical, nonlinear, and soft matter physics.
[15] Rick Stevens,et al. Essential genes on metabolic maps. , 2006, Current opinion in biotechnology.
[16] B. Snel,et al. Comparative assessment of large-scale data sets of protein–protein interactions , 2002, Nature.
[17] A. Barabasi,et al. Functional and topological characterization of protein interaction networks , 2004, Proteomics.
[18] Dianne P. O'Leary,et al. Why Do Hubs in the Yeast Protein Interaction Network Tend To Be Essential: Reexamining the Connection between the Network Topology and Essentiality , 2008, PLoS Comput. Biol..
[19] Leon Peeters,et al. Algorithms for Centrality Indices , 2004, Network Analysis.
[20] Alexander Rives,et al. Modular organization of cellular networks , 2003, Proceedings of the National Academy of Sciences of the United States of America.
[21] D. Ingber,et al. High-Betweenness Proteins in the Yeast Protein Interaction Network , 2005, Journal of biomedicine & biotechnology.
[22] R. Karp,et al. From the Cover : Conserved patterns of protein interaction in multiple species , 2005 .
[23] Mike Tyers,et al. Evolutionary and Physiological Importance of Hub Proteins , 2006, PLoS Comput. Biol..
[24] B. Palsson,et al. Genome-scale reconstruction of the metabolic network in Staphylococcus aureus N315: an initial draft to the two-dimensional annotation , 2005, BMC Microbiology.
[25] Y. Dong,et al. Systematic functional analysis of the Caenorhabditis elegans genome using RNAi , 2003, Nature.
[26] James R. Knight,et al. A comprehensive analysis of protein–protein interactions in Saccharomyces cerevisiae , 2000, Nature.
[27] C. Ball,et al. Saccharomyces Genome Database. , 2002, Methods in enzymology.
[28] Jianzhi Zhang,et al. Why Do Hubs Tend to Be Essential in Protein Networks? , 2006, PLoS genetics.
[29] S. Coulomb,et al. Gene essentiality and the topology of protein interaction networks , 2005, Proceedings of the Royal Society B: Biological Sciences.
[30] P. Bork,et al. Proteome survey reveals modularity of the yeast cell machinery , 2006, Nature.
[31] Alpan Raval,et al. Identifying Hubs in Protein Interaction Networks , 2009, PloS one.
[32] K. Sneppen,et al. Specificity and Stability in Topology of Protein Networks , 2002, Science.
[33] V. A. Stewart,et al. Blood Stage Malaria Vaccine Eliciting High Antigen-Specific Antibody Concentrations Confers No Protection to Young Children in Western Kenya , 2009, PloS one.
[34] Yang Zhang,et al. Structure Modeling of All Identified G Protein–Coupled Receptors in the Human Genome , 2006, PLoS Comput. Biol..
[35] P. Bonacich. Power and Centrality: A Family of Measures , 1987, American Journal of Sociology.
[36] M. Zelen,et al. Rethinking centrality: Methods and examples☆ , 1989 .
[37] Duncan J. Watts,et al. Collective dynamics of ‘small-world’ networks , 1998, Nature.
[38] Sanjay Kumar,et al. Computational prediction of essential genes in an unculturable endosymbiotic bacterium, Wolbachia of Brugia malayi , 2009, BMC Microbiology.
[39] Stefan Wuchty,et al. Interaction and domain networks of yeast , 2002, Proteomics.
[40] P. Stadler,et al. Centers of complex networks. , 2003, Journal of theoretical biology.
[41] O Mason,et al. Graph theory and networks in Biology. , 2006, IET systems biology.
[42] Jacques van Helden,et al. Evaluation of clustering algorithms for protein-protein interaction networks , 2006, BMC Bioinformatics.
[43] M. V. Valkenburg. Network Analysis , 1964 .
[44] Ernesto Estrada. Virtual identification of essential proteins within the protein interaction network of yeast , 2005, Proteomics.