Prediction of high-valent iron K-edge absorption spectra by time-dependent density functional theory.

In recent years, a number of high-valent iron intermediates have been identified as reactive species in iron-containing metalloproteins. Inspired by the interest in these highly reactive species, chemists have synthesized Fe(IV) and Fe(V) model complexes with terminal oxo or nitrido groups, as well as a rare example of an Fe(VI)-nitrido species. In all these cases, X-ray absorption spectroscopy has played a key role in the identification and characterization of these species, with both the energy and intensity of the pre-edge features providing spectroscopic signatures for both the oxidation state and the local site geometry. Here we build on a time-dependent DFT methodology for the prediction of Fe K- pre-edge features, previously applied to ferrous and ferric complexes, and extend it to a range of Fe(IV), Fe(V) and Fe(VI) complexes. The contributions of oxidation state, coordination environment and spin state to the spectral features are discussed. These methods are then extended to calculate the spectra of the heme active site of P450 Compound II and the non-heme active site of TauD. The potential for using these methods in a predictive manner is highlighted.

[1]  Frank Neese,et al.  All-Electron Scalar Relativistic Basis Sets for the Actinides , 2011 .

[2]  Michael T. Green,et al.  Cytochrome P450 Compound I: Capture, Characterization, and C-H Bond Activation Kinetics , 2010, Science.

[3]  Per E M Siegbahn,et al.  Significant van der Waals Effects in Transition Metal Complexes. , 2010, Journal of chemical theory and computation.

[4]  L. Que,et al.  The crystal structure of a high-spin oxoiron(IV) complex and characterization of its self-decay pathway. , 2010, Journal of the American Chemical Society.

[5]  Frank Neese,et al.  Calibration of scalar relativistic density functional theory for the calculation of sulfur K-edge X-ray absorption spectra. , 2010, Inorganic chemistry.

[6]  Frank Neese,et al.  All-Electron Scalar Relativistic Basis Sets for the Lanthanides. , 2009, Journal of chemical theory and computation.

[7]  L. Que,et al.  A synthetic high-spin oxoiron(IV) complex: generation, spectroscopic characterization, and reactivity. , 2009, Angewandte Chemie.

[8]  Adam L. Tenderholt,et al.  A combined NRVS and DFT study of Fe(IV)=O model complexes: a diagnostic method for the elucidation of non-heme iron enzyme intermediates. , 2008, Angewandte Chemie.

[9]  Takehiro Ohta,et al.  Axial ligand effects on the geometric and electronic structures of nonheme oxoiron(IV) complexes. , 2008, Journal of the American Chemical Society.

[10]  Frank Neese,et al.  Prediction of iron K-edge absorption spectra using time-dependent density functional theory. , 2008, The journal of physical chemistry. A.

[11]  F. Neese,et al.  Electronic structure and spectroscopy of "superoxidized" iron centers in model systems: theoretical and experimental trends. , 2008, Physical chemistry chemical physics : PCCP.

[12]  S. Sligar,et al.  X-ray absorption spectroscopic characterization of a cytochrome P450 compound II derivative , 2008, Proceedings of the National Academy of Sciences.

[13]  Frank Neese,et al.  All-Electron Scalar Relativistic Basis Sets for Third-Row Transition Metal Atoms. , 2008, Journal of chemical theory and computation.

[14]  Dong Wang,et al.  (TAML)FeIV O complex in aqueous solution: synthesis and spectroscopic and computational characterization. , 2008, Inorganic chemistry.

[15]  E. Solomon,et al.  Spectroscopic and quantum chemical studies on low-spin FeIV=O complexes: Fe-O bonding and its contributions to reactivity. , 2007, Journal of the American Chemical Society.

[16]  Mohammed Salah Ibrahim,et al.  Trans-dioxo manganese(V) porphyrins. , 2007, Journal of the American Chemical Society.

[17]  Lawrence Que,et al.  XAS characterization of a nitridoiron(IV) complex with a very short Fe-N bond. , 2007, Inorganic chemistry.

[18]  C. Walsh,et al.  Non-heme Fe(IV)-oxo intermediates. , 2007, Accounts of chemical research.

[19]  Arani Chanda,et al.  Chemical and Spectroscopic Evidence for an FeV-Oxo Complex , 2007, Science.

[20]  E. Solomon,et al.  Synthesis, characterization, and reactivities of manganese(V)-oxo porphyrin complexes. , 2007, Journal of the American Chemical Society.

[21]  Stefan Grimme,et al.  Semiempirical GGA‐type density functional constructed with a long‐range dispersion correction , 2006, J. Comput. Chem..

[22]  Frank Neese,et al.  An Octahedral Coordination Complex of Iron(VI) , 2006, Science.

[23]  W. Nam,et al.  A Thiolate-Ligated Nonheme Oxoiron(IV) Complex Relevant to Cytochrome P450 , 2005, Science.

[24]  C. Cramer,et al.  Structures of nonheme oxoiron(IV) complexes from X-ray crystallography, NMR spectroscopy, and DFT calculations. , 2005, Angewandte Chemie.

[25]  Frank Neese,et al.  The geometric and electronic structure of [(cyclam-acetato)Fe(N)]+: a genuine iron(v) species with a ground-state spin S = 1/2. , 2005, Angewandte Chemie.

[26]  Ilme Schlichting,et al.  Structure and chemistry of cytochrome P450. , 2005, Chemical reviews.

[27]  E. Solomon,et al.  Metal and ligand K-edge XAS of organotitanium complexes: metal 4p and 3d contributions to pre-edge intensity and their contributions to bonding. , 2005, Journal of the American Chemical Society.

[28]  Mi Hee Lim,et al.  Structural insights into nonheme alkylperoxoiron(III) and oxoiron(IV) intermediates by X-ray absorption spectroscopy. , 2004, Journal of the American Chemical Society.

[29]  W. Massa,et al.  Hydrate isomerism in [Cu(en)2(H2O)1.935]2[Fe(CN)6].4H2O. , 2004, Acta crystallographica. Section C, Crystal structure communications.

[30]  Harry B Gray,et al.  Oxoiron(IV) in Chloroperoxidase Compound II Is Basic: Implications for P450 Chemistry , 2004, Science.

[31]  Carsten Krebs,et al.  EXAFS spectroscopic evidence for an Fe=O unit in the Fe(IV) intermediate observed during oxygen activation by taurine:alpha-ketoglutarate dioxygenase. , 2004, Journal of the American Chemical Society.

[32]  J. Peters,et al.  A tetrahedrally coordinated L3Fe-Nx platform that accommodates terminal nitride (Fe(IV)N) and dinitrogen (Fe(I)-N2-Fe(I)) ligands. , 2004, Journal of the American Chemical Society.

[33]  Mi Hee Lim,et al.  Crystallographic and spectroscopic characterization of a nonheme Fe(IV)-O complex. , 2003, Science.

[34]  Frank Neese,et al.  Prediction and interpretation of the 57Fe isomer shift in Mössbauer spectra by density functional theory , 2002 .

[35]  J. Elkins,et al.  X-ray crystal structure of Escherichia coli taurine/alpha-ketoglutarate dioxygenase complexed to ferrous iron and substrates. , 2002, Biochemistry.

[36]  K Wieghardt,et al.  Mononuclear (nitrido)iron(V) and (oxo)iron(IV) complexes via photolysis of [(cyclam-acetato)FeIII(N3)]+ and ozonolysis of [(cyclam-acetato)FeIII(O3SCF3)]+ in water/acetone mixtures. , 2000, Inorganic chemistry.

[37]  M. Blomberg,et al.  Transition-metal systems in biochemistry studied by high-accuracy quantum chemical methods. , 2000, Chemical reviews.

[38]  Christoph van Wüllen,et al.  Molecular density functional calculations in the regular relativistic approximation: Method, application to coinage metal diatomics, hydrides, fluorides and chlorides, and comparison with first-order relativistic calculations , 1998 .

[39]  K. Hodgson,et al.  A Multiplet Analysis of Fe K-Edge 1s → 3d Pre-Edge Features of Iron Complexes , 1997 .

[40]  J. Dawson,et al.  Heme-Containing Oxygenases. , 1996, Chemical reviews.

[41]  Burke,et al.  Generalized Gradient Approximation Made Simple. , 1996, Physical review letters.

[42]  M. Frisch,et al.  Ab Initio Calculation of Vibrational Absorption and Circular Dichroism Spectra Using Density Functional Force Fields: A Comparison of Local, Nonlocal, and Hybrid Density Functionals , 1995 .

[43]  A. Schäfer,et al.  Fully optimized contracted Gaussian basis sets of triple zeta valence quality for atoms Li to Kr , 1994 .

[44]  Evert Jan Baerends,et al.  Relativistic regular two‐component Hamiltonians , 1993 .

[45]  Steven J Brown,et al.  Iron(II) and iron(III) complexes of N-(2-(4-imidazolyl)ethyl)pyrimidine-4-carboxamide, a ligand resembling part of the metal-binding domain of bleomycin , 1990 .

[46]  K. Cantwell Stanford synchrotron radiation laboratory , 1988 .

[47]  A. Becke,et al.  Density-functional exchange-energy approximation with correct asymptotic behavior. , 1988, Physical review. A, General physics.

[48]  J. Perdew,et al.  Density-functional approximation for the correlation energy of the inhomogeneous electron gas. , 1986, Physical review. B, Condensed matter.

[49]  J. Ibers,et al.  Structure of tetramethylammonium tetrachloroferrate(II). Comparison of iron(II) and iron(III) bond lengths in high-spin tetrahedral environments , 1975 .

[50]  G. Stucky,et al.  Structural and spectroscopic studies of tetrachlorophosphonium tetrachloroferrate(III), [PCl4][FeCl4] , 1968 .

[51]  Mindy I. Davis,et al.  Geometric and electronic structure/function correlations in non-heme iron enzymes. , 2000, Chemical reviews.

[52]  A. Klamt,et al.  COSMO : a new approach to dielectric screening in solvents with explicit expressions for the screening energy and its gradient , 1993 .

[53]  M. Gerloch,et al.  The crystal and molecular structure of NN′-bis(salicylideneiminato)-iron(III)chloride as a five-co-ordinate monomer , 1967 .