aLFQ: an R-package for estimating absolute protein quantities from label-free LC-MS/MS proteomics data
暂无分享,去创建一个
Lars Malmström | Ruedi Aebersold | George Rosenberger | Hannes L. Röst | Christina Ludwig | R. Aebersold | Lars Malmström | H. Röst | George A. Rosenberger | C. Ludwig | L. Malmström
[1] Alexey I Nesvizhskii,et al. Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search. , 2002, Analytical chemistry.
[2] R. Aebersold,et al. A statistical model for identifying proteins by tandem mass spectrometry. , 2003, Analytical chemistry.
[3] S. Bryant,et al. Open mass spectrometry search algorithm. , 2004, Journal of proteome research.
[4] R. Aebersold,et al. A uniform proteomics MS/MS analysis platform utilizing open XML file formats , 2005, Molecular systems biology.
[5] M. Gorenstein,et al. Absolute Quantification of Proteins by LCMSE , 2006, Molecular & Cellular Proteomics.
[6] Michael K. Coleman,et al. Statistical analysis of membrane proteome expression changes in Saccharomyces cerevisiae. , 2006, Journal of proteome research.
[7] D. Tabb,et al. MyriMatch: highly accurate tandem mass spectral peptide identification by multivariate hypergeometric analysis. , 2007, Journal of proteome research.
[8] E. Marcotte,et al. Absolute protein expression profiling estimates the relative contributions of transcriptional and translational regulation , 2007, Nature Biotechnology.
[9] Knut Reinert,et al. OpenMS – An open-source software framework for mass spectrometry , 2008, BMC Bioinformatics.
[10] Ruedi Aebersold,et al. Building consensus spectral libraries for peptide identification in proteomics , 2008, Nature Methods.
[11] Minoru Kanehisa,et al. AAindex: amino acid index database, progress report 2008 , 2007, Nucleic Acids Res..
[12] E. Marcotte,et al. Calculating absolute and relative protein abundance from mass spectrometry-based protein expression data , 2008, Nature Protocols.
[13] J. Garin,et al. Isotope dilution strategies for absolute quantitative proteomics. , 2009, Journal of proteomics.
[14] R. Aebersold,et al. Proteome-wide cellular protein concentrations of the human pathogen Leptospira interrogans , 2009, Nature.
[15] Brendan MacLean,et al. Skyline: an open source document editor for creating and analyzing targeted proteomics experiments , 2010, Bioinform..
[16] Natalie I. Tasman,et al. A guided tour of the Trans‐Proteomic Pipeline , 2010, Proteomics.
[17] M. Selbach,et al. Global quantification of mammalian gene expression control , 2011, Nature.
[18] Ruedi Aebersold,et al. Estimation of Absolute Protein Quantities of Unlabeled Samples by Selected Reaction Monitoring Mass Spectrometry , 2011, Molecular & Cellular Proteomics.
[19] Henry H. N. Lam,et al. Absolute quantification of microbial proteomes at different states by directed mass spectrometry , 2011, Molecular systems biology.
[20] Adamandia Kapopoulou,et al. TubercuList--10 years after. , 2011, Tuberculosis.
[21] Natalie I. Tasman,et al. iProphet: Multi-level Integrative Analysis of Shotgun Proteomic Data Improves Peptide and Protein Identification Rates and Error Estimates* , 2011, Molecular & Cellular Proteomics.
[22] R. Aebersold,et al. mProphet: automated data processing and statistical validation for large-scale SRM experiments , 2011, Nature Methods.
[23] Alexey I Nesvizhskii,et al. Abacus: A computational tool for extracting and pre‐processing spectral count data for label‐free quantitative proteomic analysis , 2011, Proteomics.
[24] Alexander Schmidt,et al. Critical assessment of proteome‐wide label‐free absolute abundance estimation strategies , 2013, Proteomics.
[25] Ruedi Aebersold,et al. Statistical Approach to Protein Quantification* , 2013, Molecular & Cellular Proteomics.
[26] Andreas Quandt,et al. An automated pipeline for high-throughput label-free quantitative proteomics. , 2013, Journal of proteome research.
[27] Ben C. Collins,et al. A tool for the automated, targeted analysis of data-independent acquisition MS-data: OpenSWATH , 2014 .