Self-assembly of phenylalanine oligopeptides: insights from experiments and simulations.
暂无分享,去创建一个
L. Serpell | P. Sikorski | E. Gazit | P. Tamamis | M. Reches | G. Archontis | K. Marshall | Lihi Adler‐Abramovich
[1] Virander S. Chauhan,et al. Stimuli responsive self-assembled hydrogel of a low molecular weight free dipeptide with potential for tunable drug delivery. , 2008, Biomacromolecules.
[2] K. Kern,et al. Electrospinning of Diphenylalanine Nanotubes , 2008 .
[3] D Thirumalai,et al. Structures and free-energy landscapes of the wild type and mutants of the Abeta(21-30) peptide are determined by an interplay between intrapeptide electrostatic and hydrophobic interactions. , 2008, Journal of molecular biology.
[4] Guanghong Wei,et al. Self-assembly of the beta2-microglobulin NHVTLSQ peptide using a coarse-grained protein model reveals a beta-barrel species. , 2008, The journal of physical chemistry. B.
[5] C. Görbitz,et al. The monohydrates of the four polar dipeptides L-seryl-L-asparagine, L-seryl-L-tyrosine, L-tryptophanyl-L-serine and L-tyrosyl-L-tryptophan. , 2008, Acta crystallographica. Section C, Crystal structure communications.
[6] L. Adler-Abramovich,et al. Controlled patterning of peptide nanotubes and nanospheres using inkjet printing technology , 2008, Journal of peptide science : an official publication of the European Peptide Society.
[7] Rein V. Ulijn,et al. Fmoc‐Diphenylalanine Self Assembles to a Hydrogel via a Novel Architecture Based on π–π Interlocked β‐Sheets , 2008 .
[8] Michele Vendruscolo,et al. Role of Intermolecular Forces in Defining Material Properties of Protein Nanofibrils , 2007, Science.
[9] S. Kim,et al. Liquid Crystalline Peptide Nanowires , 2007 .
[10] Ehud Gazit,et al. Self-assembled peptide nanostructures: the design of molecular building blocks and their technological utilization. , 2007, Chemical Society reviews.
[11] Heather T. McFarlane,et al. Atomic structures of amyloid cross-β spines reveal varied steric zippers , 2007, Nature.
[12] Ronald D. Hills,et al. Hydrophobic cooperativity as a mechanism for amyloid nucleation. , 2007, Journal of molecular biology.
[13] Ehud Gazit,et al. Peptide self-assembly at the nanoscale: a challenging target for computational and experimental biotechnology. , 2007, Trends in biotechnology.
[14] F. Avilés,et al. Ile-phe dipeptide self-assembly: clues to amyloid formation. , 2007, Biophysical journal.
[15] Joan-Emma Shea,et al. The structure of the Alzheimer amyloid beta 10-35 peptide probed through replica-exchange molecular dynamics simulations in explicit solvent. , 2007, Journal of molecular biology.
[16] Carl Henrik Görbitz,et al. Microporous organic materials from hydrophobic dipeptides. , 2007, Chemistry.
[17] Shuguang Zhang,et al. Designer self-assembling peptide materials. , 2007, Macromolecular bioscience.
[18] D Thirumalai,et al. Monomer adds to preformed structured oligomers of Aβ-peptides by a two-stage dock–lock mechanism , 2007, Proceedings of the National Academy of Sciences.
[19] E. Gazit. Self Assembly of Short Aromatic Peptides into Amyloid Fibrils and Related Nanostructures , 2007, Prion.
[20] Andreas Hoenger,et al. Amyloid fibril formation propensity is inherent into the hexapeptide tandemly repeating sequence of the central domain of silkmoth chorion proteins of the A-family. , 2006, Journal of structural biology.
[21] E. Gazit,et al. Controlled patterning of aligned self-assembled peptide nanotubes , 2006, Nature nanotechnology.
[22] Amedeo Caflisch,et al. Computational models for the prediction of polypeptide aggregation propensity. , 2006, Current opinion in chemical biology.
[23] Ruth Nussinov,et al. Simulations as analytical tools to understand protein aggregation and predict amyloid conformation. , 2006, Current opinion in chemical biology.
[24] Fabrizio Chiti,et al. Sequence and structural determinants of amyloid fibril formation. , 2006, Accounts of chemical research.
[25] C. David Sherrill,et al. High-Accuracy Quantum Mechanical Studies of π−π Interactions in Benzene Dimers , 2006 .
[26] S. Radford,et al. The organization of aromatic side groups in an amyloid fibril probed by solid-state 2H and 19F NMR spectroscopy. , 2006, Journal of the American Chemical Society.
[27] C. Dobson,et al. Protein misfolding, functional amyloid, and human disease. , 2006, Annual review of biochemistry.
[28] Meital Reches,et al. Rigid, Self‐Assembled Hydrogel Composed of a Modified Aromatic Dipeptide , 2006 .
[29] Carl Henrik Görbitz,et al. The structure of nanotubes formed by diphenylalanine, the core recognition motif of Alzheimer's beta-amyloid polypeptide. , 2006, Chemical communications.
[30] Niccolò Taddei,et al. Assessing the role of aromatic residues in the amyloid aggregation of human muscle acylphosphatase , 2006, Protein science : a publication of the Protein Society.
[31] Jie Zheng,et al. Designing a Nanotube Using Naturally Occurring Protein Building Blocks , 2006, PLoS Comput. Biol..
[32] C. Brooks,et al. Balancing solvation and intramolecular interactions: toward a consistent generalized Born force field. , 2006, Journal of the American Chemical Society.
[33] Rein V Ulijn,et al. Enzyme-triggered self-assembly of peptide hydrogels via reversed hydrolysis. , 2006, Journal of the American Chemical Society.
[34] E. Gazit. Mechanisms of amyloid fibril self‐assembly and inhibition , 2005, The FEBS journal.
[35] Amedeo Caflisch,et al. Prediction of aggregation rate and aggregation‐prone segments in polypeptide sequences , 2005, Protein science : a publication of the Protein Society.
[36] C. Mousseau. Exploring the Early Steps of Amyloid Peptide Aggregation by , 2005 .
[37] Michele Vendruscolo,et al. Prediction of "aggregation-prone" and "aggregation-susceptible" regions in proteins associated with neurodegenerative diseases. , 2005, Journal of molecular biology.
[38] Meital Reches,et al. Peptide nanotube-modified electrodes for enzyme-biosensor applications. , 2005, Analytical chemistry.
[39] David Barlam,et al. Self-assembled peptide nanotubes are uniquely rigid bioinspired supramolecular structures. , 2005, Nano letters.
[40] E. Gazit,et al. Self-assembly of peptide nanotubes and amyloid-like structures by charged-termini-capped diphenylalanine peptide analogues , 2005 .
[41] Y. Duan,et al. The role of Phe in the formation of well-ordered oligomers of amyloidogenic hexapeptide (NFGAIL) observed in molecular dynamics simulations with explicit solvent. , 2005, Biophysical journal.
[42] D. Raleigh,et al. Role of aromatic interactions in amyloid formation by peptides derived from human Amylin. , 2004, Biochemistry.
[43] F. Rao,et al. Replica exchange molecular dynamics simulations of amyloid peptide aggregation. , 2004, The Journal of chemical physics.
[44] J. Gsponer,et al. Molecular dynamics studies of the process of amyloid aggregation of peptide fragments of transthyretin. , 2004, Journal of molecular biology.
[45] Sivakumar R. Challa,et al. Synthesis of peptide-nanotube platinum-nanoparticle composites. , 2004, Chemical communications.
[46] Ruth Nussinov,et al. Peptide sequence and amyloid formation; molecular simulations and experimental study of a human islet amyloid polypeptide fragment and its analogs. , 2004, Structure.
[47] Meital Reches,et al. Formation of Closed-Cage Nanostructures by Self-Assembly of Aromatic Dipeptides , 2004 .
[48] Charles L. Brooks,et al. Generalized born model with a simple smoothing function , 2003, J. Comput. Chem..
[49] R. Nussinov,et al. The sequence dependence of fiber organization. A comparative molecular dynamics study of the islet amyloid polypeptide segments 22-27 and 22-29. , 2003, Journal of molecular biology.
[50] Meital Reches,et al. Casting Metal Nanowires Within Discrete Self-Assembled Peptide Nanotubes , 2003, Science.
[51] Alessandro Pedretti,et al. VEGA: a versatile program to convert, handle and visualize molecular structure on Windows-based PCs. , 2002, Journal of molecular graphics & modelling.
[52] Ehud Gazit,et al. Global analysis of tandem aromatic octapeptide repeats: The significance of the aromatic-glycine motif , 2002, Bioinform..
[53] K. Sanbonmatsu,et al. Structure of Met‐enkephalin in explicit aqueous solution using replica exchange molecular dynamics , 2002, Proteins.
[54] Ehud Gazit,et al. A possible role for π‐stacking in the self‐assembly of amyloid fibrils , 2002, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.
[55] C. Görbitz. Nanotube formation by hydrophobic dipeptides. , 2001, Chemistry.
[56] A. Rich,et al. Extensive neurite outgrowth and active synapse formation on self-assembling peptide scaffolds. , 2000, Proceedings of the National Academy of Sciences of the United States of America.
[57] Alexander D. MacKerell,et al. All-atom empirical potential for molecular modeling and dynamics studies of proteins. , 1998, The journal of physical chemistry. B.
[58] K Schulten,et al. VMD: visual molecular dynamics. , 1996, Journal of molecular graphics.
[59] K. Hukushima,et al. Exchange Monte Carlo Method and Application to Spin Glass Simulations , 1995, cond-mat/9512035.
[60] P. Argos,et al. Knowledge‐based protein secondary structure assignment , 1995, Proteins.
[61] Juan R. Granja,et al. Self-assembling organic nanotubes based on a cyclic peptide architecture , 1993, Nature.
[62] L Laaksonen,et al. A graphics program for the analysis and display of molecular dynamics trajectories. , 1992, Journal of molecular graphics.
[63] M. Karplus,et al. CHARMM: A program for macromolecular energy, minimization, and dynamics calculations , 1983 .
[64] G. Ciccotti,et al. Numerical Integration of the Cartesian Equations of Motion of a System with Constraints: Molecular Dynamics of n-Alkanes , 1977 .
[65] C. Hall,et al. Computational approaches to fibril structure and formation. , 2006, Methods in enzymology.
[66] Meital Reches,et al. Novel electrochemical biosensing platform using self-assembled peptide nanotubes. , 2005, Nano letters.
[67] Hugh Nymeyer,et al. Atomic Simulations of Protein Folding, Using the Replica Exchange Algorithm , 2004, Numerical Computer Methods, Part D.
[68] D. Case,et al. Generalized born models of macromolecular solvation effects. , 2000, Annual review of physical chemistry.