Functional gene diversity analysis in BTEX contaminated soils by means of PCR-SSCP DNA fingerprinting: comparative diversity assessment against bacterial isolates and PCR-DNA clone libraries.
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[1] U. K. Laemmli,et al. Cleavage of Structural Proteins during the Assembly of the Head of Bacteriophage T4 , 1970, Nature.
[2] P. Williams,et al. The metabolic divergence in the meta cleavage of catechols by Pseudomonas putida NCIB 10015. Physiological significance and evolutionary implications. , 1972, European journal of biochemistry.
[3] M. M. Bradford. A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. , 1976, Analytical biochemistry.
[4] H. Knackmuss,et al. Chemical structure and biodegradability of halogenated aromatic compounds. Two catechol 1,2-dioxygenases from a 3-chlorobenzoate-grown pseudomonad. , 1978, The Biochemical journal.
[5] D. Hopper,et al. Regulation of enzymes of the 3,5-xylenol-degradative pathway in Pseudomonas putida: evidence for a plasmid , 1980, Journal of bacteriology.
[6] Edward Tower. Industrial organization and regulation , 1980 .
[7] H. Knackmuss,et al. Chemical structure and biodegradability of halogenated aromatic compounds. Halogenated muconic acids as intermediates. , 1980, The Biochemical journal.
[8] H. Kagamiyama,et al. Complete nucleotide sequence of the metapyrocatechase gene on the TOI plasmid of Pseudomonas putida mt-2. , 1983, The Journal of biological chemistry.
[9] J. Sambrook,et al. Molecular Cloning: A Laboratory Manual , 2001 .
[10] S. Keil,et al. Evolutionary conservation of genes coding for meta pathway enzymes within TOL plasmids pWW0 and pWW53 , 1985, Journal of bacteriology.
[11] P. Williams,et al. Naturally occurring TOL plasmids in Pseudomonas strains carry either two homologous or two nonhomologous catechol 2,3-oxygenase genes , 1986, Journal of bacteriology.
[12] I. C. Gunsalus,et al. Nucleotide sequence and expression of gene nahH of plasmid NAH7 and homology with gene xylE of TOL pWWO. , 1987, Gene.
[13] V. Shingler,et al. Nucleotide sequence and expression of the catechol 2,3-dioxygenase-encoding gene of phenol-catabolizing Pseudomonas CF600. , 1989, Gene.
[14] B J Bassam,et al. Fast and sensitive silver staining of DNA in polyacrylamide gels. , 1991, Analytical biochemistry.
[15] R. Benjamin,et al. Nucleotide sequence of xylE from the TOL pDK1 plasmid and structural comparison with isofunctional catechol-2,3-dioxygenase genes from TOL, pWW0 and NAH7 , 1991, Journal of bacteriology.
[16] K. Timmis,et al. Two independently regulated cytochromes P-450 in a Rhodococcus rhodochrous strain that degrades 2-ethoxyphenol and 4-methoxybenzoate , 1993, Journal of bacteriology.
[17] Yves Van de Peer,et al. TREECON: a software package for the construction and drawing of evolutionary trees , 1993, Comput. Appl. Biosci..
[18] S. Harayama,et al. Substrate specificity of catechol 2,3-dioxygenase encoded by TOL plasmid pWW0 of Pseudomonas putida and its relationship to cell growth , 1994, Journal of bacteriology.
[19] K. Furukawa,et al. Functional and structural relationship of various extradiol aromatic ring-cleavage dioxygenases of Pseudomonas origin. , 1994, FEMS microbiology letters.
[20] P. Williams,et al. The lower pathway operon for benzoate catabolism in biphenyl-utilizing Pseudomonas sp. strain IC and the nucleotide sequence of the bphE gene for catechol 2,3-dioxygenase. , 1994, Microbiology.
[21] R. Atlas,et al. Frequency of genes in aromatic and aliphatic hydrocarbon biodegradation pathways within bacterial populations from Alaskan sediments. , 1994, Canadian journal of microbiology.
[22] A. Stolz,et al. Characterization of a 2,3-dihydroxybiphenyl dioxygenase from the naphthalenesulfonate-degrading bacterium strain BN6 , 1995, Journal of bacteriology.
[23] J. Bolin,et al. Evolutionary relationships among extradiol dioxygenases , 1996, Journal of bacteriology.
[24] M. Gouy,et al. WWW-query: an on-line retrieval system for biological sequence banks. , 1996, Biochimie.
[25] M. Forsman,et al. DNA recovery and PCR quantification of catechol 2,3-dioxygenase genes from different soil types. , 1996, Journal of biotechnology.
[26] K. Min,et al. Characterization of the gene encoding catechol 2,3-dioxygenase of Alcaligenes sp. KF711: overexpression, enzyme purification, and nucleotide sequencing. , 1996, Archives of biochemistry and biophysics.
[27] Teruyuki Nagamune,et al. Cloning and characterization of extradiol aromatic ring-cleavage dioxygenases of Pseudomonas aeruginosa JI104 , 1996 .
[28] B. Fox,et al. Changes in the regiospecificity of aromatic hydroxylation produced by active site engineering in the diiron enzyme toluene 4-monooxygenase. , 1997, Biochemistry.
[29] G. Muyzer,et al. Genetic diversity and expression of the [NiFe] hydrogenase large-subunit gene of Desulfovibrio spp. in environmental samples , 1997, Applied and environmental microbiology.
[30] I. Head,et al. Diversity among aromatic hydrocarbon‐degrading bacteria and their meta‐cleavagegenes , 1997, Journal of applied microbiology.
[31] J. Thompson,et al. The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. , 1997, Nucleic acids research.
[32] D. L. Harris,et al. Multiplex PCR assay for detection of Clostridium perfringens in feces and intestinal contents of pigs and in swine feed. , 1998, Veterinary microbiology.
[33] S. Harayama,et al. PCR isolation of catechol 2,3-dioxygenase gene fragments from environmental samples and their assembly into functional genes. , 1998, Gene.
[34] G. Sayler,et al. Assessment of the Microbiological Potential for the Natural Attenuation of Petroleum Hydrocarbons in a Shallow Aquifer System , 1998, Microbial Ecology.
[35] T. Omori,et al. Cloning and nucleotide sequence of carbazole catabolic genes from Pseudomonas stutzeri strain OM1, isolated from activated sludge. , 1998, The Journal of general and applied microbiology.
[36] C. Tebbe,et al. A New Approach To Utilize PCR–Single-Strand-Conformation Polymorphism for 16S rRNA Gene-Based Microbial Community Analysis , 1998, Applied and Environmental Microbiology.
[37] W. Reineke. Development of hybrid strains for the mineralization of chloroaromatics by patchwork assembly. , 1998, Annual review of microbiology.
[38] K. Timmis,et al. Identification of Chlorobenzene Dioxygenase Sequence Elements Involved in Dechlorination of 1,2,4,5-Tetrachlorobenzene , 1998, Journal of bacteriology.
[39] S. Meyer,et al. Differential detection of key enzymes of polyaromatic-hydrocarbon-degrading bacteria using PCR and gene probes. , 1999, Microbiology.
[40] I. Head,et al. Identification of novel bacterial lineages as active members of microbial populations in a freshwater sediment using a rapid RNA extraction procedure and RT-PCR. , 1999, Microbiology.
[41] Thomas L. Madden,et al. BLAST 2 Sequences, a new tool for comparing protein and nucleotide sequences. , 1999, FEMS microbiology letters.
[42] K. Inaka,et al. An archetypical extradiol-cleaving catecholic dioxygenase: the crystal structure of catechol 2,3-dioxygenase (metapyrocatechase) from Ppseudomonas putida mt-2. , 1999, Structure.
[43] G. Bestetti,et al. Distribution of catabolic pathways in some hydrocarbon-degrading bacteria from a subsurface polluted soil. , 2000, Research in microbiology.
[44] M. Gillings,et al. Novel forms of ring-hydroxylating dioxygenases are widespread in pristine and contaminated soils. , 2000, Environmental microbiology.
[45] D. Gibson,et al. Substrate Specificity of Naphthalene Dioxygenase: Effect of Specific Amino Acids at the Active Site of the Enzyme , 2000, Journal of bacteriology.
[46] E. Moore,et al. Complete nucleotide sequence and evolutionary significance of a chromosomally encoded naphthalene-degradation lower pathway from Pseudomonas stutzeri AN10. , 2000, Gene.
[47] Cindy H. Nakatsu,et al. Development of Catechol 2,3-Dioxygenase-Specific Primers for Monitoring Bioremediation by Competitive Quantitative PCR , 2000, Applied and Environmental Microbiology.
[48] G. Sello,et al. Organization and Regulation of metaCleavage Pathway Genes for Toluene and o-Xylene Derivative Degradation in Pseudomonas stutzeri OX1 , 2001, Applied and Environmental Microbiology.
[49] C. Tebbe,et al. Effect of Primers Hybridizing to Different Evolutionarily Conserved Regions of the Small-Subunit rRNA Gene in PCR-Based Microbial Community Analyses and Genetic Profiling , 2001, Applied and Environmental Microbiology.
[50] M. Bruns,et al. Isolate PM1 populations are dominant and novel methyl tert-butyl ether-degrading bacterial in compost biofilter enrichments. , 2001, Environmental microbiology.
[51] M. Klotz,et al. Diversity of ammonia monooxygenase operon in autotrophic ammonia-oxidizing bacteria , 2002, Archives of Microbiology.
[52] M. Schlömann,et al. Mechanism of Chloride Elimination from 3-Chloro- and 2,4-Dichloro-cis,cis-Muconate: New Insight Obtained from Analysis of Muconate Cycloisomerase Variant CatB-K169A , 2001, Journal of bacteriology.
[53] B. Shapiro,et al. Prediction of DNA single-strand conformation polymorphism: analysis by capillary electrophoresis and computerized DNA modeling. , 2001, Nucleic acids research.
[54] M. Aragno,et al. nifH gene diversity in the bacterial community associated with the rhizosphere of Molinia coerulea, an oligonitrophilic perennial grass. , 2002, Environmental microbiology.
[55] S. Heim,et al. The Viable but Nonculturable State and Starvation Are Different Stress Responses of Enterococcus faecalis, as Determined by Proteome Analysis , 2002, Journal of bacteriology.
[56] Harry R Beller,et al. A real-time polymerase chain reaction method for monitoring anaerobic, hydrocarbon-degrading bacteria based on a catabolic gene. , 2002, Environmental science & technology.
[57] J. Lawrence,et al. Gene transfer in bacteria: speciation without species? , 2002, Theoretical population biology.
[58] Mark J. Bailey,et al. RNA Stable Isotope Probing, a Novel Means of Linking Microbial Community Function to Phylogeny , 2002, Applied and Environmental Microbiology.
[59] P. Williams,et al. A Third Transposable Element, ISPpu12, from the Toluene-Xylene Catabolic Plasmid pWW0 of Pseudomonas putida mt-2 , 2002, Journal of bacteriology.
[60] T. Omori,et al. Recent developments in molecular techniques for identification and monitoring of xenobiotic-degrading bacteria and their catabolic genes in bioremediation , 2002, Applied Microbiology and Biotechnology.
[61] Ngadiman,et al. Alteration of Regiospecificity in Biphenyl Dioxygenase by Active-Site Engineering , 2002, Journal of bacteriology.
[62] L. Øvreås,et al. Microbial diversity and function in soil: from genes to ecosystems. , 2002, Current opinion in microbiology.
[63] D. Stahl,et al. Parallel Characterization of Anaerobic Toluene- and Ethylbenzene-Degrading Microbial Consortia by PCR-Denaturing Gradient Gel Electrophoresis, RNA-DNA Membrane Hybridization, and DNA Microarray Technology , 2002, Applied and Environmental Microbiology.
[64] J. Wikner,et al. Limited resolution of 16S rDNA DGGE caused by melting properties and closely related DNA sequences. , 2003, Journal of microbiological methods.
[65] C. Nakatsu,et al. Detection and Enumeration of Aromatic Oxygenase Genes by Multiplex and Real-Time PCR , 2003, Applied and Environmental Microbiology.
[66] D. Pieper,et al. Efficient Turnover of Chlorocatechols Is Essential for Growth of Ralstonia eutropha JMP134(pJP4) in 3-Chlorobenzoic Acid , 2003, Journal of bacteriology.
[67] James R. Cole,et al. The Ribosomal Database Project (RDP-II): previewing a new autoaligner that allows regular updates and the new prokaryotic taxonomy , 2003, Nucleic Acids Res..
[68] C. Tebbe,et al. Bacterial diversity in maize rhizospheres: conclusions on the use of genetic profiles based on PCR‐amplified partial small subunit rRNA genes in ecological studies , 2002, Molecular ecology.
[69] R. Fani,et al. Fluctuation of bacteria isolated from elm tissues during different seasons and from different plant organs. , 2003, Research in microbiology.
[70] R. Maier,et al. Application of a Reverse Transcription-PCRassay to monitor regulation of the catabolicnahAc gene during phenanthrene degradation , 2004, Biodegradation.
[71] W. Reineke,et al. Isolation and characterization of a 3-chlorobenzoate degrading pseudomonad , 2004, Archives of Microbiology.
[72] P. Williams,et al. The evolution of pathways for aromatic hydrocarbon oxidation inPseudomonas , 1994, Biodegradation.
[73] C. Müller,et al. Localization and organization of phenol degradation genes ofPseudomonas putida strain H , 1995, Molecular and General Genetics MGG.
[74] H. Knackmuss,et al. Cometabolism of 3-methylbenzoate and methylcatechols by a 3-chlorobenzoate utilizingPseudomonas: Accumulation of (+)-2,5-dihydro-4-methyl-and (+)-2,5-dihydro-2-methyl-5-oxo-furan-2-acetic acid , 1976, European journal of applied microbiology and biotechnology.