Discussion: On Methods Controlling the False Discovery Rate

It is a pleasure to acknowledge another insightful article by Sarkar. By developing clever expressions for the FDP, FDR, and FNR, he manages to prove fundamental properties of stepdown and stepup methods. It is particularly important that the theory is sufficiently developed so as to apply to what Sarkar calls adaptive BH methods. Here, the goal is to improve upon the Benjamini Hochberg procedure by incorporating a data-dependent estimate of the number of true null hypotheses. Theoretical justification of such methods is vital and Sarkar’s analysis is useful for this purpose.