Investigating mitochondrial gene expression patterns in Drosophila melanogaster using network analysis to understand aging mechanisms
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Salvatore Daniele Bianco | P. Guzzi | T. Mazza | T. Biagini | A. Novelli | Francesco Petrizzelli | Niccolò Liorni | Viviana Caputo | Alessandro Napoli | Manuel Mangoni | Marta Adinolfi
[1] P. Vinod,et al. Network-level analysis of ageing and its relationship with diseases and tissue regeneration in the mouse liver , 2023, Scientific Reports.
[2] M. Kanehisa,et al. KEGG for taxonomy-based analysis of pathways and genomes , 2022, Nucleic Acids Res..
[3] A. Mortazavi,et al. PyWGCNA: a Python package for weighted gene co-expression network analysis , 2022, bioRxiv.
[4] Tianjiao Zhang,et al. Gene expression data analysis using Hellinger correlation in weighted gene co-expression networks (WGCNA) , 2022, Computational and structural biotechnology journal.
[5] Steven J. Marygold,et al. FlyBase: a guided tour of highlighted features , 2022, Genetics.
[6] J. Auwerx,et al. Pleiotropic effects of mitochondria in aging , 2022, Nature Aging.
[7] Joong-Jean Park,et al. Mitochondrial aconitase 1 regulates age‐related memory impairment via autophagy/mitophagy‐mediated neural plasticity in middle‐aged flies , 2021, Aging cell.
[8] Jingli Liu,et al. Weighted gene co expression network analysis (WGCNA) with key pathways and hub‐genes related to micro RNAs in ischemic stroke , 2021, IET systems biology.
[9] D. Baker,et al. Cellular senescence in ageing: from mechanisms to therapeutic opportunities , 2020, Nature Reviews Molecular Cell Biology.
[10] F. Jordán,et al. Pyntacle: a parallel computing-enabled framework for large-scale network biology analysis , 2020, GigaScience.
[11] T. Mazza,et al. microRNA‐mRNA network model in patients with achalasia , 2019, Neurogastroenterology and motility : the official journal of the European Gastrointestinal Motility Society.
[12] Meenakshi S Kagda,et al. New developments on the Encyclopedia of DNA Elements (ENCODE) data portal , 2019, Nucleic Acids Res..
[13] Jianxi Gao,et al. Robustness and lethality in multilayer biological molecular networks , 2019, Nature Communications.
[14] Anushya Muruganujan,et al. PANTHER version 14: more genomes, a new PANTHER GO-slim and improvements in enrichment analysis tools , 2018, Nucleic Acids Res..
[15] Focusing on mitochondrial form and function , 2018, Nature Cell Biology.
[16] H. Yoshida,et al. Neuron‐specific knockdown of Drosophila PDHB induces reduction of lifespan, deficient locomotive ability, abnormal morphology of motor neuron terminals and photoreceptor axon targeting , 2018, Experimental cell research.
[17] Y. Saeys,et al. A comprehensive evaluation of module detection methods for gene expression data , 2018, Nature Communications.
[18] J. Gil,et al. Senescence and aging: Causes, consequences, and therapeutic avenues , 2018, The Journal of cell biology.
[19] Victor Joo Chuan Tong,et al. Health and disease phenotyping in old age using a cluster network analysis , 2017, Scientific Reports.
[20] M. Copetti,et al. MicroRNA co-expression networks exhibit increased complexity in pancreatic ductal compared to Vater's papilla adenocarcinoma , 2017, Oncotarget.
[21] L. Partridge,et al. Drosophila as a model for ageing. , 2017, Biochimica et biophysica acta. Molecular basis of disease.
[22] I. Castilla-Cortázar,et al. Insulin-like growth factor 1 (IGF-1) therapy: Mitochondrial dysfunction and diseases. , 2016, Biochimica et biophysica acta.
[23] Caterina Fusilli,et al. Multifaceted enrichment analysis of RNA–RNA crosstalk reveals cooperating micro-societies in human colorectal cancer , 2016, Nucleic acids research.
[24] Jim Thurmond,et al. FlyBase: introduction of the Drosophila melanogaster Release 6 reference genome assembly and large-scale migration of genome annotations , 2014, Nucleic Acids Res..
[25] A. Orekhov,et al. Mitochondrial Aging and Age-Related Dysfunction of Mitochondria , 2014, BioMed research international.
[26] Tommaso Mazza,et al. Estimating the global density of graphs by a sparseness index , 2013, Appl. Math. Comput..
[27] Manuel Serrano,et al. The Hallmarks of Aging , 2013, Cell.
[28] Rosita Guido,et al. The Relevance of Topology in Parallel Simulation of Biological Networks , 2012, IEEE/ACM Transactions on Computational Biology and Bioinformatics.
[29] Tommaso Mazza,et al. Mirna Expression Profiles Identify Drivers in Colorectal and Pancreatic Cancers , 2012, PloS one.
[30] Matko Bosnjak,et al. REVIGO Summarizes and Visualizes Long Lists of Gene Ontology Terms , 2011, PloS one.
[31] Ferenc Jordán,et al. Estimating the divisibility of complex biological networks by sparseness indices , 2010, Briefings Bioinform..
[32] Mark D. Robinson,et al. edgeR: a Bioconductor package for differential expression analysis of digital gene expression data , 2009, Bioinform..
[33] R. Bellazzi,et al. Association of the FOXO3A locus with extreme longevity in a southern Italian centenarian study. , 2009, Rejuvenation research.
[34] Paolo Ballarini,et al. Studying Irreversible Transitions in a Model of Cell Cycle Regulation , 2009, PASM@EPEW.
[35] Rosita Guido,et al. Taming the complexity of biological pathways through parallel computing , 2008, Briefings Bioinform..
[36] Stephen P. Borgatti,et al. Identifying sets of key players in a social network , 2006, Comput. Math. Organ. Theory.
[37] K. Nair,et al. Decline in skeletal muscle mitochondrial function with aging in humans. , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[38] M. Tatar,et al. A Mutant Drosophila Insulin Receptor Homolog That Extends Life-Span and Impairs Neuroendocrine Function , 2001, Science.
[39] E. Hafen,et al. Extension of Life-Span by Loss of CHICO, a Drosophila Insulin Receptor Substrate Protein , 2001, Science.
[40] Thomas R. Gingeras,et al. STAR: ultrafast universal RNA-seq aligner , 2013, Bioinform..
[41] M. Zhan,et al. Aging studies in Drosophila melanogaster. , 2013, Methods in molecular biology.
[42] A. Barabasi,et al. Network medicine : a network-based approach to human disease , 2010 .
[43] Domenico Catalano,et al. MitoDrome: a database of Drosophila melanogaster nuclear genes encoding proteins targeted to the mitochondrion , 2003, Nucleic Acids Res..
[44] Scott F. Gilbert,et al. Developmental Biology, 6th edition , 2000 .
[45] S. Gilbert. Aging: The Biology of Senescence , 2000 .