Sequence-dependent sliding kinetics of p53
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Antoine M. van Oijen | L. Mirny | A. Fersht | A. V. van Oijen | Anahita Tafvizi | F. Huang | Jason S. Leith | W. Uspal | P. Doyle
[1] Huan‐Xiang Zhou. Rapid search for specific sites on DNA through conformational switch of nonspecifically bound proteins , 2011, Proceedings of the National Academy of Sciences.
[2] Bin Wu,et al. Real-Time Observation of Transcription Initiation and Elongation on an Endogenous Yeast Gene , 2011, Science.
[3] A. Fersht,et al. Single-Molecule characterization of oligomerization kinetics and equilibria of the tumor suppressor p53 , 2010, Nucleic acids research.
[4] A. Fersht,et al. Electron microscopy studies on the quaternary structure of p53 reveal different binding modes for p53 tetramers in complex with DNA , 2010, Proceedings of the National Academy of Sciences.
[5] Antoine M. van Oijen,et al. A single-molecule characterization of p53 search on DNA , 2010, Proceedings of the National Academy of Sciences.
[6] Antoine M van Oijen,et al. Single-molecule binding experiments on long time scales. , 2010, The Review of scientific instruments.
[7] Andrej Kosmrlj,et al. How a protein searches for its site on DNA: the mechanism of facilitated diffusion , 2009 .
[8] Alberto Inga,et al. The expanding universe of p53 targets , 2009, Nature Reviews Cancer.
[9] Kwang-Hwi Cho,et al. BIOPHYSICS AND COMPUTATIONAL BIOLOGY , 2009 .
[10] Eric C Greene,et al. Visualizing one-dimensional diffusion of proteins along DNA , 2008, Nature Structural &Molecular Biology.
[11] Antoine M. van Oijen,et al. Tumor suppressor p53 slides on DNA with low friction and high stability. , 2008, Biophysical journal.
[12] D. Bell,et al. Noncanonical DNA Motifs as Transactivation Targets by Wild Type and Mutant p53 , 2008, PLoS genetics.
[13] Paul Wach,et al. Evidence for a common mode of transcription factor interaction with chromatin as revealed by improved quantitative fluorescence recovery after photobleaching. , 2008, Biophysical journal.
[14] A. Fersht,et al. Algorithm for prediction of tumour suppressor p53 affinity for binding sites in DNA , 2008, Nucleic acids research.
[15] D. Reichman,et al. Dynamic basis for one-dimensional DNA scanning by the mismatch repair complex Msh2-Msh6. , 2007, Molecular cell.
[16] D. Bell,et al. Divergent Evolution of Human p53 Binding Sites: Cell Cycle Versus Apoptosis , 2007, PLoS genetics.
[17] J. Elf,et al. Probing Transcription Factor Dynamics at the Single-Molecule Level in a Living Cell , 2007, Science.
[18] Ruth Nussinov,et al. Sequence analysis of p53 response-elements suggests multiple binding modes of the p53 tetramer to DNA targets , 2007, Nucleic acids research.
[19] Shuang-yong Xu,et al. BstYI bound to noncognate DNA reveals a "hemispecific" complex: implications for DNA scanning. , 2007, Structure.
[20] S. Quake,et al. A Systems Approach to Measuring the Binding Energy Landscapes of Transcription Factors , 2007, Science.
[21] G Marius Clore,et al. NMR structural and kinetic characterization of a homeodomain diffusing and hopping on nonspecific DNA , 2006, Proceedings of the National Academy of Sciences.
[22] E. Cox,et al. Single molecule measurements of repressor protein 1D diffusion on DNA. , 2006, Physical review letters.
[23] Keli Han,et al. Hu, Han, and He Reply: , 2006 .
[24] Michael Q. Zhang,et al. A clustering property of highly-degenerate transcription factor binding sites in the mammalian genome , 2006, Nucleic acids research.
[25] A. Grosberg,et al. How proteins search for their specific sites on DNA: the role of DNA conformation. , 2006, Biophysical journal.
[26] Antoine M. van Oijen,et al. A base-excision DNA-repair protein finds intrahelical lesion bases by fast sliding in contact with DNA. , 2006, Proceedings of the National Academy of Sciences of the United States of America.
[27] Z. Weng,et al. A Global Map of p53 Transcription-Factor Binding Sites in the Human Genome , 2006, Cell.
[28] S. Halford,et al. Measurement of the contributions of 1D and 3D pathways to the translocation of a protein along DNA. , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[29] A. Fersht,et al. Comparative binding of p53 to its promoter and DNA recognition elements. , 2005, Journal of molecular biology.
[30] C. Prives,et al. p53 linear diffusion along DNA requires its C terminus. , 2004, Molecular cell.
[31] M. Kulesz-Martin,et al. Facilitated search for specific genomic targets by p53 c-terminal basic DNA binding domain , 2004, Cancer biology & therapy.
[32] A. Fersht,et al. Cooperative binding of tetrameric p53 to DNA. , 2004, Journal of molecular biology.
[33] Rolf Boelens,et al. Toward an integrated model of protein-DNA recognition as inferred from NMR studies on the Lac repressor system. , 2004, Chemical reviews.
[34] R. Kaptein,et al. Structure and Flexibility Adaptation in Nonspecific and Specific Protein-DNA Complexes , 2004, Science.
[35] J. Marko,et al. How do site-specific DNA-binding proteins find their targets? , 2004, Nucleic acids research.
[36] L. Mirny,et al. Kinetics of protein-DNA interaction: facilitated target location in sequence-dependent potential. , 2004, Biophysical journal.
[37] Peter G Wolynes,et al. Protein topology determines binding mechanism. , 2004, Proceedings of the National Academy of Sciences of the United States of America.
[38] Ting Wang,et al. Groups of p53 target genes involved in specific p53 downstream effects cluster into different classes of DNA binding sites , 2002, Oncogene.
[39] W. Deppert,et al. Specific Interaction of p53 with Target Binding Sites Is Determined by DNA Conformation and Is Regulated by the C-terminal Domain* , 2002, The Journal of Biological Chemistry.
[40] C. Klein,et al. NMR Spectroscopy Reveals the Solution Dimerization Interface of p53 Core Domains Bound to Their Consensus DNA* , 2001, The Journal of Biological Chemistry.
[41] A. Levine,et al. Surfing the p53 network , 2000, Nature.
[42] J. Levine,et al. Surfing the p53 network , 2000, Nature.
[43] K. Murakami,et al. Single-molecule imaging of RNA polymerase-DNA interactions in real time. , 1999, Biophysical journal.
[44] K. Kinzler,et al. p53 tagged sites from human genomic DNA. , 1994, Human molecular genetics.
[45] R E Glass,et al. Visualization of single molecules of RNA polymerase sliding along DNA. , 1993, Science.
[46] K. Kinzler,et al. Definition of a consensus binding site for p53 , 1992, Nature Genetics.
[47] P. V. von Hippel,et al. Facilitated Target Location in Biological Systems* , 2022 .
[48] P. V. von Hippel,et al. Diffusion-driven mechanisms of protein translocation on nucleic acids. 3. The Escherichia coli lac repressor--operator interaction: kinetic measurements and conclusions. , 1981, Biochemistry.
[49] P. V. von Hippel,et al. Diffusion-driven mechanisms of protein translocation on nucleic acids. 2. The Escherichia coli repressor--operator interaction: equilibrium measurements. , 1981, Biochemistry.
[50] P. V. von Hippel,et al. Diffusion-driven mechanisms of protein translocation on nucleic acids. 1. Models and theory. , 1981, Biochemistry.
[51] D. Gillespie. A General Method for Numerically Simulating the Stochastic Time Evolution of Coupled Chemical Reactions , 1976 .