A closed binding pocket and global destabilization modify the binding properties of an alternatively spliced form of the second PDZ domain of PTP-BL.
暂无分享,去创建一个
Geerten W Vuister | Sander B Nabuurs | Marlies Oostendorp | S. Nabuurs | G. W. Vuister | T. Walma | M. Oostendorp | W. Hendriks | J. Aelen | Tine Walma | Jan Aelen | Wiljan Hendriks | Lieke van den Berk | Lieke C J van den Berk | Lieke C. J. van den Berk
[1] C. Pace,et al. Protein conformational stabilities can be determined from hydrogen exchange rates , 1999, Nature Structural Biology.
[2] E. Cuppen,et al. The zyxin-related protein TRIP6 interacts with PDZ motifs in the adaptor protein RIL and the protein tyrosine phosphatase PTP-BL. , 2000, European journal of cell biology.
[3] A. Palmer,et al. Backbone dynamics of Escherichia coli ribonuclease HI: correlations with structure and function in an active enzyme. , 1995, Journal of molecular biology.
[4] Gert Vriend,et al. Quantitative evaluation of experimental NMR restraints. , 2003, Journal of the American Chemical Society.
[5] Paola Vaccaro,et al. PDZ domains: troubles in classification , 2002, FEBS letters.
[6] E. Cuppen,et al. PDZ motifs in PTP-BL and RIL bind to internal protein segments in the LIM domain protein RIL. , 1998, Molecular biology of the cell.
[7] C. W. Hilbers,et al. Improving the quality of protein structures derived by NMR spectroscopy** , 2002, Journal of biomolecular NMR.
[8] J. Hus,et al. Efficient analysis of macromolecular rotational diffusion from heteronuclear relaxation data , 2000, Journal of biomolecular NMR.
[9] K. Wüthrich. NMR of proteins and nucleic acids , 1988 .
[10] M. Zimmer,et al. EphrinB phosphorylation and reverse signaling: regulation by Src kinases and PTP-BL phosphatase. , 2002, Molecular cell.
[11] R. Heumann,et al. The protein kinase C‐related kinase PRK2 interacts with the protein tyrosine phosphatase PTP‐BL via a novel PDZ domain binding motif , 2001, FEBS letters.
[12] John Calvin Reed,et al. FAP-1: a protein tyrosine phosphatase that associates with Fas. , 1995, Science.
[13] J. Thornton,et al. AQUA and PROCHECK-NMR: Programs for checking the quality of protein structures solved by NMR , 1996, Journal of biomolecular NMR.
[14] K Wüthrich,et al. The program XEASY for computer-supported NMR spectral analysis of biological macromolecules , 1995, Journal of biomolecular NMR.
[15] P. Argos,et al. Analysis of insertions/deletions in protein structures. , 1992, Journal of molecular biology.
[16] E. Cuppen,et al. A FERM domain governs apical confinement of PTP-BL in epithelial cells. , 1999, Journal of cell science.
[17] T. Dittmar,et al. The protein tyrosine phosphatase PTP-BL associates with the midbody and is involved in the regulation of cytokinesis. , 2003, Molecular biology of the cell.
[18] E. Cuppen,et al. No Evidence for Involvement of Mouse Protein-tyrosine Phosphatase-BAS-like Fas-associated Phosphatase-1 in Fas-mediated Apoptosis* , 1997, The Journal of Biological Chemistry.
[19] M. Mossing. Solution structure and dynamics of a designed monomeric variant of the lambda Cro repressor , 1998, Protein Science.
[20] Yawen Bai,et al. Primary structure effects on peptide group hydrogen exchange , 1993, Biochemistry.
[21] Kalle Gehring,et al. Solution structure of the PDZ2 domain from cytosolic human phosphatase hPTP1E complexed with a peptide reveals contribution of the beta2-beta3 loop to PDZ domain-ligand interactions. , 2002, Journal of molecular biology.
[22] W. Hendriks,et al. PDZ domains – glue and guide , 2003, Molecular Biology Reports.
[23] Jacek Otlewski,et al. PDZ tandem of human syntenin: crystal structure and functional properties. , 2003, Structure.
[24] L K Pannell,et al. Role of the omega-loop in the activity, substrate specificity, and structure of class A beta-lactamase. , 1998, Biochemistry.
[25] Ad Bax,et al. Validation of Protein Structure from Anisotropic Carbonyl Chemical Shifts in a Dilute Liquid Crystalline Phase , 1998 .
[26] C. Heldin,et al. Cloning and characterization of PTPL1, a protein tyrosine phosphatase with similarities to cytoskeletal-associated proteins. , 1994, Journal of Biological Chemistry.
[27] Wei Feng,et al. PDZ7 of Glutamate Receptor Interacting Protein Binds to Its Target via a Novel Hydrophobic Surface Area* , 2002, The Journal of Biological Chemistry.
[28] Geerten W Vuister,et al. Structure, dynamics and binding characteristics of the second PDZ domain of PTP-BL. , 2002, Journal of Molecular Biology.
[29] H. Edelsbrunner,et al. Anatomy of protein pockets and cavities: Measurement of binding site geometry and implications for ligand design , 1998, Protein science : a publication of the Protein Society.
[30] K. Gehring,et al. Effect of peptide binding on amide proton exchange rates in the PDZ2 domain from human phosphatase hPTP1E. , 1998, Biochemistry and cell biology = Biochimie et biologie cellulaire.
[31] A. Naito,et al. Association of protein-tyrosine phosphatase PTP-BAS with the transcription-factor-inhibitory protein IkappaBalpha through interaction between the PDZ1 domain and ankyrin repeats. , 1999, The Biochemical journal.
[32] P. Mishra,et al. Probing the role of a mobile loop in substrate binding and enzyme activity of human salivary amylase. , 2003, Journal of molecular biology.
[33] R. Guy,et al. Investigation of the PDZ domain ligand binding site using chemically modified peptides. , 2002, Bioorganic & medicinal chemistry letters.
[34] G Vriend,et al. WHAT IF: a molecular modeling and drug design program. , 1990, Journal of molecular graphics.
[35] B. Matthews,et al. Protein structural plasticity exemplified by insertion and deletion mutants in T4 lysozyme , 1996, Protein science : a publication of the Protein Society.
[36] Alexander D. MacKerell,et al. All-atom empirical potential for molecular modeling and dynamics studies of proteins. , 1998, The journal of physical chemistry. B.
[37] J. Hus,et al. A novel interactive tool for rigid-body modeling of multi-domain macromolecules using residual dipolar couplings , 2001, Journal of biomolecular NMR.
[38] J. Fransen,et al. Cloning and characterization of mCRIP2, a mouse LIM‐only protein that interacts with PDZ domain IV of PTP‐BL , 2003, Genes to cells : devoted to molecular & cellular mechanisms.
[39] Volkmar Lessmann,et al. The Adenomatous Polyposis Coli-protein (APC) interacts with the protein tyrosine phosphatase PTP-BL via an alternatively spliced PDZ domain , 2000, Oncogene.
[40] S. Grzesiek,et al. NMRPipe: A multidimensional spectral processing system based on UNIX pipes , 1995, Journal of biomolecular NMR.
[41] B. Wieringa,et al. Identification and molecular characterization of BP75, a novel bromodomain‐containing protein , 1999, FEBS letters.
[42] R. Stocco,et al. A novel protein-tyrosine phosphatase with homology to both the cytoskeletal proteins of the band 4.1 family and junction-associated guanylate kinases. , 1994, The Journal of biological chemistry.
[43] U. Hellman,et al. A Novel GTPase-activating Protein for Rho Interacts with a PDZ Domain of the Protein-tyrosine Phosphatase PTPL1* , 1997, The Journal of Biological Chemistry.
[44] J. Ladias,et al. Novel Mode of Ligand Recognition by the Erbin PDZ Domain* , 2003, The Journal of Biological Chemistry.