Applications of toxicogenomics to nonclinical drug development: regulatory science considerations.

Scientists in the pharmaceutical industry have ready access to samples from animal toxicology studies carefully designed to test the safety characteristics of a steady pipeline of agents advancing toward clinical testing. Applications of toxicogenomics to the evaluation of compounds could best be realized if this promising technology could be implemented in these studies fully anchored in the traditional study end points currently used to characterize phenotypic outcome and to support the safe conduct of clinical testing. Regulatory authorities worldwide have declared their support for toxicogenomics and related technological tools to positively impact drug development, and guidance has been published. However, applications of exploratory "omics" technologies to compounds undergoing safety testing remain inhibited due to two core data submission responsibility implications and ambiguities: (1) constraints arising from continual literature surveillance and data reanalysis burdens, under the shadow of looming subsequent reporting requirements to regulatory authorities as gene expression end points loosely linked to safety gain attention in the published literature, and (2) ambiguities in interpretation of validation stature remain between exploratory, probable valid, and known valid safety biomarkers. A proposal is offered to address these regulatory implementation barriers to open access for exploring this technology in prospective drug development animal toxicology studies.

[1]  Mark W. Craven,et al.  Identification of toxicologically predictive gene sets using cDNA microarrays. , 2001, Molecular pharmacology.

[2]  Federico Goodsaid,et al.  Process map proposal for the validation of genomic biomarkers. , 2006, Pharmacogenomics.

[3]  Ronald W. Davis,et al.  Quantitative Monitoring of Gene Expression Patterns with a Complementary DNA Microarray , 1995, Science.

[4]  Lee Bennett,et al.  Gene expression analysis reveals chemical-specific profiles. , 2002, Toxicological sciences : an official journal of the Society of Toxicology.

[5]  S. Gill,et al.  Gene expression changes induced in mouse liver by di(2-ethylhexyl) phthalate. , 2002, Toxicology and applied pharmacology.

[6]  Stephen H. Friend,et al.  Toxicogenomics and drug discovery: will new technologies help us produce better drugs? , 2002, Nature Reviews Drug Discovery.

[7]  J. Reindel,et al.  RNA expression in the early characterization of hepatotoxicants in Wistar rats by high‐density DNA microarrays , 2001, Hepatology.

[8]  D. Gerhold,et al.  Identification of Genetic Pathways Activated by the Androgen Receptor during the Induction of Proliferation in the Ventral Prostate Gland* , 2004, Journal of Biological Chemistry.

[9]  R G Ulrich,et al.  Clustering of hepatotoxins based on mechanism of toxicity using gene expression profiles. , 2001, Toxicology and applied pharmacology.

[10]  I. Kola,et al.  Can the pharmaceutical industry reduce attrition rates? , 2004, Nature Reviews Drug Discovery.

[11]  Lee Bennett,et al.  Prediction of compound signature using high density gene expression profiling. , 2002, Toxicological sciences : an official journal of the Society of Toxicology.

[12]  Heidrun Ellinger-Ziegelbauer,et al.  Characteristic expression profiles induced by genotoxic carcinogens in rat liver. , 2004, Toxicological sciences : an official journal of the Society of Toxicology.

[13]  J. Wagner,et al.  Biomarkers and Surrogate End Points for Fit‐for‐Purpose Development and Regulatory Evaluation of New Drugs , 2007, Clinical pharmacology and therapeutics.

[14]  Shiew-Mei Huang,et al.  Pharmacogenetics and Pharmacogenomics in Drug Development and Regulatory Decision Making: Report of the First FDA‐PWG‐PhRMA‐DruSafe Workshop , 2003, Journal of clinical pharmacology.

[15]  Vivian S W Chan,et al.  The Use of Toxicogenomic Data in Risk Assessment: A Regulatory Perspective , 2005, Clinical toxicology.

[16]  Emanuel F. Petricoin,et al.  Medical applications of microarray technologies: a regulatory science perspective , 2002, Nature Genetics.

[17]  John A. Wagner,et al.  A cost-effectiveness approach to the qualification and acceptance of biomarkers , 2006, Nature Reviews Drug Discovery.

[18]  K. Kolaja,et al.  Acute molecular markers of rodent hepatic carcinogenesis identified by transcription profiling. , 2004, Chemical research in toxicology.