Conformational variability in Escherichia coli 70S ribosome as revealed by 3D cryo-electron microscopy.

[1]  J Frank,et al.  Escherichia coli 70 S ribosome at 15 A resolution by cryo-electron microscopy: localization of fMet-tRNAfMet and fitting of L1 protein. , 1998, Journal of molecular biology.

[2]  J Frank,et al.  Visualization of elongation factor G on the Escherichia coli 70S ribosome: the mechanism of translocation. , 1998, Proceedings of the National Academy of Sciences of the United States of America.

[3]  Harry F Noller,et al.  Mapping the Position of Translational Elongation Factor EF-G in the Ribosome by Directed Hydroxyl Radical Probing , 1998, Cell.

[4]  R. Brimacombe,et al.  Visualization of elongation factor Tu on the Escherichia coli ribosome , 1997, Nature.

[5]  M van Heel,et al.  A new model for the three-dimensional folding of Escherichia coli 16 S ribosomal RNA. III. The topography of the functional centre. , 1997, Journal of molecular biology.

[6]  A E Dahlberg,et al.  A conformational switch in Escherichia coli 16S ribosomal RNA during decoding of messenger RNA. , 1997, Science.

[7]  R. Brimacombe,et al.  A new model for the three-dimensional folding of Escherichia coli 16 S ribosomal RNA. I. Fitting the RNA to a 3D electron microscopic map at 20 A. , 1997, Journal of molecular biology.

[8]  R. Brimacombe,et al.  Arrangement of tRNAs in Pre- and Posttranslocational Ribosomes Revealed by Electron Cryomicroscopy , 1997, Cell.

[9]  J Frank,et al.  Three-dimensional reconstruction of the Escherichia coli 30 S ribosomal subunit in ice. , 1996, Journal of molecular biology.

[10]  R. Agrawal,et al.  Sites of Ribosomal RNAs Involved in the Subunit Association of Tight and Loose Couple Ribosomes* , 1996, The Journal of Biological Chemistry.

[11]  J. Frank,et al.  Direct Visualization of A-, P-, and E-Site Transfer RNAs in the Escherichia coli Ribosome , 1996, Science.

[12]  R. Brimacombe,et al.  The ribosomal environment of tRNA: crosslinks to rRNA from positions 8 and 20:1 in the central fold of tRNA located at the A, P, or E site. , 1995, RNA: A publication of the RNA Society.

[13]  C. Spahn,et al.  The elongating ribosome: structural and functional aspects. , 1995, Biochemistry and cell biology = Biochimie et biologie cellulaire.

[14]  J. Frank,et al.  A model of the translational apparatus based on a three-dimensional reconstruction of the Escherichia coli ribosome. , 1995, Biochemistry and cell biology = Biochimie et biologie cellulaire.

[15]  A. Oleinikov,et al.  Location and domain structure of Escherichia coli ribosomal protein L7/L12: site specific cysteine crosslinking and attachment of fluorescent probes. , 1995, Biochemistry and cell biology = Biochimie et biologie cellulaire.

[16]  J. Bullard,et al.  Regions of 23 S ribosomal RNA proximal to transfer RNA bound at the P and E sites. , 1995, Journal of molecular biology.

[17]  D. V. Van Ryk,et al.  Structural changes in the 530 loop of Escherichia coli 16S rRNA in mutants with impaired translational fidelity. , 1995, Nucleic acids research.

[18]  J. Frank,et al.  A model of protein synthesis based on cryo-electron microscopy of the E. coli ribosome , 1995, Nature.

[19]  M van Heel,et al.  The 70S Escherichia coli ribosome at 23 A resolution: fitting the ribosomal RNA. , 1995, Structure.

[20]  A. P. Potapov,et al.  Synergism between the GTPase activities of EF-Tu.GTP and EF-G.GTP on empty ribosomes. Elongation factors as stimulators of the ribosomal oscillation between two conformations. , 1994, Journal of molecular biology.

[21]  S C Harvey,et al.  A quantitative model of the Escherichia coli 16 S RNA in the 30 S ribosomal subunit. , 1994, Journal of molecular biology.

[22]  K. Nierhaus,et al.  Solution of the ribosome riddle: how the ribosome selects the correct aminoacyl‐tRNA out of 41 similar contestants , 1993, Molecular microbiology.

[23]  W. Tapprich,et al.  Evidence for a conformational change in the exit site of the Escherichia coli ribosome upon tRNA binding. , 1993, Biochemistry.

[24]  W. Wintermeyer,et al.  Topography of the E site on the Escherichia coli ribosome. , 1993, The EMBO journal.

[25]  A. Yonath.  Approaching atomic resolution in crystallography of ribosomes. , 1992, Annual review of biophysics and biomolecular structure.

[26]  W. Hill,et al.  Probing dynamic changes in rRNA conformation in the 30S subunit of the Escherichia coli ribosome. , 1992, Biochemistry.

[27]  R P May,et al.  Inter‐protein distances within the large subunit from Escherichia coli ribosomes. , 1992, The EMBO journal.

[28]  H. Noller,et al.  A functional pseudoknot in 16S ribosomal RNA. , 1991, The EMBO journal.

[29]  J. Lake,et al.  DNA-hybridization electron microscopy tertiary structure of 16 S rRNA. , 1990, Journal of molecular biology.

[30]  P. Cann,et al.  Localization of an oligodeoxynucleotide complementing 16S ribosomal RNA residues 520-531 on the small subunit of Escherichia coli ribosomes: electron microscopy of ribosome-cDNA-antibody complexes. , 1990, Nucleic acids research.

[31]  J. Lake,et al.  DNA-hybridization electron microscopy. Localization of five regions of 16 S rRNA on the surface of 30 S ribosomal subunits. , 1990, Journal of molecular biology.

[32]  H. Noller,et al.  Binding of tRNA to the ribosomal A and P sites protects two distinct sets of nucleotides in 16 S rRNA. , 1990, Journal of molecular biology.

[33]  Harry F. Noller,et al.  Intermediate states in the movement of transfer RNA in the ribosome , 1989, Nature.

[34]  J. Ebel,et al.  Probing the phosphates of the Escherichia coli ribosomal 16S RNA in its naked form, in the 30S subunit, and in the 70S ribosome. , 1989, Biochemistry.

[35]  H. Noller,et al.  Interaction of tRNA with 23S rRNA in the ribosomal A, P, and E sites , 1989, Cell.

[36]  P. Wollenzien,et al.  An RNA secondary structure switch between the inactive and active conformations of the Escherichia coli 30 S ribosomal subunit. , 1989, The Journal of biological chemistry.

[37]  H. Noller,et al.  Model for the three-dimensional folding of 16 S ribosomal RNA. , 1988, Journal of molecular biology.

[38]  R. Brimacombe,et al.  A detailed model of the three-dimensional structure of Escherichia coli 16 S ribosomal RNA in situ in the 30 S subunit. , 1988, Journal of molecular biology.

[39]  J A Langer,et al.  A complete mapping of the proteins in the small ribosomal subunit of Escherichia coli. , 1987, Science.

[40]  A. Liljas,et al.  The structure and dynamics of ribosomal protein L12. , 1987, Biochimie.

[41]  Harry F. Noller,et al.  Transfer RNA shields specific nucleotides in 16S ribosomal RNA from attack by chemical probes , 1986, Cell.

[42]  H. Noller,et al.  Interconversion of active and inactive 30 S ribosomal subunits is accompanied by a conformational change in the decoding region of 16 S rRNA. , 1986, Journal of molecular biology.

[43]  H. Rheinberger,et al.  Allosteric interactions between the ribosomal transfer RNA-binding sites A and E. , 1986, The Journal of biological chemistry.

[44]  A. Bogdanov,et al.  Topography of RNA in the ribosome: location of the 5 S RNA residues A39 and U40 on the central protuberance of the 50 S subunit , 1985, FEBS letters.

[45]  H. Noller,et al.  Chemical probing of conformation in large RNA molecules. Analysis of 16 S ribosomal RNA using diethylpyrocarbonate. , 1984, Journal of molecular biology.

[46]  J. Ofengand,et al.  High resolution localization of the tRNA anticodon interaction site on the Escherichia coli 30 S ribosomal subunit. , 1984, The Journal of biological chemistry.

[47]  J. E. Mellema,et al.  Ribosomal proteins L7/L12 of Escherichia coli. Localization and possible molecular mechanism in translation. , 1983, Journal of Molecular Biology.

[48]  H. Noller,et al.  Protection of ribosomal RNA from kethoxal in polyribosomes. Implication of specific sites in ribosome function. , 1983, Journal of molecular biology.

[49]  J. Ofengand,et al.  Covalent crosslinking of tRNA1Val to 16S RNA at the ribosomal P site: identification of crosslinked residues. , 1982, Proceedings of the National Academy of Sciences of the United States of America.

[50]  I. Shatsky,et al.  Topography of RNA in the ribosome: location of the 3′‐end of 5 S RNA on the central protuberance of the 50 S subunit , 1980, FEBS letters.

[51]  R. Brimacombe,et al.  RNA sequences associated with proteins L1, L9, and L5, L18, L25, in ribonucleoprotein fragments isolated from the 50-S subunit of Escherichia coli ribosomes. , 1976, European journal of biochemistry.

[52]  J. Ebel,et al.  The binding site of protein L1 on 23-S ribosomal RNA from Escherichia coli. 3. Nucleotide sequence. , 1976, European journal of biochemistry.

[53]  A. Spirin,et al.  Factor-free ("non-enzymic") and factor-dependent systems of translation of polyuridylic acid by Escherichia coli ribosomes. , 1976, Journal of molecular biology.

[54]  A. Zamir,et al.  Characterization of different conformational forms of 30 S ribosomal subunits in isolated and associated states: possible correlations between structure and function. , 1975, Journal of Molecular Biology.

[55]  J. Shine,et al.  The 3'-terminal sequence of Escherichia coli 16S ribosomal RNA: complementarity to nonsense triplets and ribosome binding sites. , 1974, Proceedings of the National Academy of Sciences of the United States of America.

[56]  L. Bosch,et al.  The association of ribosomal subunits of Escherichia coli. 2. Two types of association products differing in sensitivity to hydrostatic pressure generated during centrifugation. , 1973, European journal of biochemistry.

[57]  L. Bosch,et al.  The association of ribosomal subunits of Escherichia coli. 1. Two types of association products differing in their apparent sedimentation coefficient. , 1973, European journal of biochemistry.

[58]  R. Miskin,et al.  N-ethyl maleimide as a probe for the study of functional sites and conformations of 30 S ribosomal subunits. , 1973, Journal of molecular biology.

[59]  R. Miskin,et al.  Inactivation and reactivation of ribosomal subunits: amino acyl-transfer RNA binding activity of the 30 s subunit of Escherichia coli. , 1971, Journal of molecular biology.

[60]  S. Pestka.  Studies on the formation of transfer ribonucleic acid-ribosome complexes. VI. Oligopeptide synthesis and translocation on ribosomes in the presence and absence of soluble transfer factors. , 1969, The Journal of biological chemistry.

[61]  J. Frank,et al.  The movement of tRNA through the ribosome. , 1998, Biophysical journal.

[62]  A. Oleinikov,et al.  The hinge region of Escherichia coli ribosomal protein L7/L12 is required for factor binding and GTP hydrolysis. , 1995, Biochimie.

[63]  H. Noller,et al.  The 530 loop of 16S rRNA: a signal to EF-Tu? , 1994, Trends in genetics : TIG.

[64]  Walter E. Hill,et al.  The Ribosome : structure, function, and evolution , 1990 .

[65]  J. Lake,et al.  DNA hybridization electron microscopy: ribosomal RNA nucleotides 1392-1407 are exposed in the cleft of the small subunit. , 1986, Proceedings of the National Academy of Sciences of the United States of America.

[66]  D. P. Burma,et al.  Conformational Change of 50S Ribosomes during Protein Synthesis , 1986 .

[67]  R. Brimacombe,et al.  RNA Structure and RNA-Protein Neighborhoods in the Ribosome , 1986 .

[68]  R. Traut,et al.  Protein Topography of Ribosomal Functional Domains: Effects of Monoclonal Antibodies to Different Epitopes in Escherichia coli Protein L7/L12 on Ribosome Function and Structure , 1986 .

[69]  A. Spirin.  Ribosomal translocation: facts and models. , 1985, Progress in nucleic acid research and molecular biology.

[70]  R. Wagner,et al.  Effects of the ribosomal subunit association on the chemical modification of the 16S and 23S RNAs from Escherichia coli. , 1985, European journal of biochemistry.

[71]  S. Pestka.  Studies on the formation of transfer ribonucleic acid-ribosome complexes. 8. Survey of the effect of antibiotics of N-acetyl-phenylalanyl-puromycin formation: possible mechanism of chloramphenicol action. , 1970, Archives of biochemistry and biophysics.