In vivo high-resolution diffusion tensor imaging of the mouse brain

[1]  Daniel Marek,et al.  Performance of a 200‐MHz cryogenic RF probe designed for MRI and MRS of the murine brain , 2008, Magnetic resonance in medicine.

[2]  Yi Jiang,et al.  Microscopic diffusion tensor atlas of the mouse brain , 2011, NeuroImage.

[3]  S. Mori,et al.  Principles of Diffusion Tensor Imaging and Its Applications to Basic Neuroscience Research , 2006, Neuron.

[4]  J C Mazziotta,et al.  Automated image registration: II. Intersubject validation of linear and nonlinear models. , 1998, Journal of computer assisted tomography.

[5]  Derek K Jones,et al.  Applications of diffusion‐weighted and diffusion tensor MRI to white matter diseases – a review , 2002, NMR in biomedicine.

[6]  Michael I. Miller,et al.  Spatiotemporal mapping of brain atrophy in mouse models of Huntington's disease using longitudinal in vivo magnetic resonance imaging , 2012, NeuroImage.

[7]  Jürgen Hennig,et al.  In vivo diffusion tensor magnetic resonance imaging and fiber tracking of the mouse brain , 2010, NMR in biomedicine.

[8]  P. V. van Zijl,et al.  Analysis of noise effects on DTI‐based tractography using the brute‐force and multi‐ROI approach , 2004, Magnetic resonance in medicine.

[9]  Michael I. Miller,et al.  Longitudinal characterization of brain atrophy of a Huntington's disease mouse model by automated morphological analyses of magnetic resonance images , 2010, NeuroImage.

[10]  Stephen J Blackband,et al.  Aldehyde fixative solutions alter the water relaxation and diffusion properties of nervous tissue , 2009, Magnetic resonance in medicine.

[11]  Lindsay S. Cahill,et al.  Preparation of fixed mouse brains for MRI , 2012, NeuroImage.

[12]  R. E. Schmidt,et al.  Toward accurate diagnosis of white matter pathology using diffusion tensor imaging , 2007, Magnetic resonance in medicine.

[13]  D. Holtzman,et al.  Diffusion Tensor Imaging Reliably Detects Experimental Traumatic Axonal Injury and Indicates Approximate Time of Injury , 2007, The Journal of Neuroscience.

[14]  Alan C. Evans,et al.  Longitudinal neuroanatomical changes determined by deformation-based morphometry in a mouse model of Alzheimer's disease , 2008, NeuroImage.

[15]  Fahmeed Hyder,et al.  Neurodevelopment of C57B/L6 mouse brain assessed by in vivo diffusion tensor imaging , 2007, NMR in biomedicine.

[16]  R. Mark Henkelman,et al.  Automated deformation analysis in the YAC128 Huntington disease mouse model , 2008, NeuroImage.

[17]  M. Garwood,et al.  Adiabatic pulses , 1997, NMR in biomedicine.

[18]  M. Rudin,et al.  Micro MRI of the mouse brain using a novel 400 MHz cryogenic quadrature RF probe , 2009, NMR in biomedicine.

[19]  Susumu Mori,et al.  Fiber tracking: principles and strategies – a technical review , 2002, NMR in biomedicine.

[20]  R. Mark Henkelman,et al.  High resolution three-dimensional brain atlas using an average magnetic resonance image of 40 adult C57Bl/6J mice , 2008, NeuroImage.

[21]  Susumu Mori,et al.  Three‐dimensional diffusion tensor microimaging for anatomical characterization of the mouse brain , 2010, Magnetic resonance in medicine.

[22]  P. Hof,et al.  A three-dimensional digital atlas database of the adult C57BL/6J mouse brain by magnetic resonance microscopy , 2005, Neuroscience.

[23]  Alan C. Evans,et al.  A three-dimensional MRI atlas of the mouse brain with estimates of the average and variability. , 2005, Cerebral cortex.

[24]  R. M. Henkelman,et al.  Development of a high resolution three-dimensional surgical atlas of the murine head for strains 129S1/SvImJ and C57Bl/6J using magnetic resonance imaging and micro-computed tomography , 2007, Neuroscience.

[25]  P. Basser,et al.  Toward a quantitative assessment of diffusion anisotropy , 1996, Magnetic resonance in medicine.

[26]  Hsiao-Fang Liang,et al.  Noninvasive detection of cuprizone induced axonal damage and demyelination in the mouse corpus callosum , 2006, Magnetic resonance in medicine.

[27]  Susumu Mori,et al.  Diffusion Tensor Magnetic Resonance Imaging and Tract-Tracing Analysis of Probst Bundle Structure in Netrin1- and DCC-Deficient Mice , 2007, The Journal of Neuroscience.

[28]  Hangyi Jiang,et al.  DtiStudio: Resource program for diffusion tensor computation and fiber bundle tracking , 2006, Comput. Methods Programs Biomed..

[29]  G. Paxinos,et al.  Atlas of the developing mouse brain at E 17.5, P0, and P6 , 2007 .

[30]  Yi Jiang,et al.  Microscopic diffusion tensor imaging of the mouse brain , 2010, NeuroImage.

[31]  Shu-Wei Sun,et al.  Fixation, not death, reduces sensitivity of DTI in detecting optic nerve damage , 2009, NeuroImage.

[32]  G. Johnson,et al.  High-resolution magnetic resonance histology of the embryonic and neonatal mouse: A 4D atlas and morphologic database , 2008, Proceedings of the National Academy of Sciences.

[33]  Hsiao-Fang Liang,et al.  Formalin fixation alters water diffusion coefficient magnitude but not anisotropy in infarcted brain , 2005, Magnetic resonance in medicine.

[34]  S. Riederer,et al.  Analysis of T2 limitations and off‐resonance effects on spatial resolution and artifacts in echo‐planar imaging , 1990, Magnetic resonance in medicine.

[35]  Michael I. Miller,et al.  Multi-contrast large deformation diffeomorphic metric mapping for diffusion tensor imaging , 2009, NeuroImage.

[36]  George Paxinos,et al.  The Mouse Brain in Stereotaxic Coordinates , 2001 .

[37]  A. Toga,et al.  Temporal dynamics of brain anatomy. , 2003, Annual review of biomedical engineering.

[38]  J. R. Landis,et al.  The measurement of observer agreement for categorical data. , 1977, Biometrics.

[39]  V. Rasche,et al.  Fast Diffusion Tensor Magnetic Resonance Imaging of the Mouse Brain at Ultrahigh-Field: Aiming at Cohort Studies , 2012, PloS one.

[40]  Denis Le Bihan,et al.  Looking into the functional architecture of the brain with diffusion MRI , 2003, Nature Reviews Neuroscience.

[41]  Jerry L Prince,et al.  Effects of signal‐to‐noise ratio on the accuracy and reproducibility of diffusion tensor imaging–derived fractional anisotropy, mean diffusivity, and principal eigenvector measurements at 1.5T , 2007, Journal of magnetic resonance imaging : JMRI.

[42]  Xin Xu,et al.  An MRI-based atlas and database of the developing mouse brain , 2011, NeuroImage.

[43]  Michael A. King,et al.  Cellular-level diffusion tensor microscopy and fiber tracking in mammalian nervous tissue with direct histological correlation , 2010, NeuroImage.

[44]  P. Basser,et al.  MR diffusion tensor spectroscopy and imaging. , 1994, Biophysical journal.

[45]  S. Mori,et al.  Magnetic resonance imaging and micro-computed tomography combined atlas of developing and adult mouse brains for stereotaxic surgery , 2009, Neuroscience.

[46]  Christos Davatzikos,et al.  Quantification of brain maturation and growth patterns in C57BL/6J mice via computational neuroanatomy of diffusion tensor images. , 2008, Cerebral cortex.

[47]  P. Khong,et al.  Mild Hypoxic-Ischemic Injury in the Neonatal Rat Brain: Longitudinal Evaluation of White Matter Using Diffusion Tensor MR Imaging , 2009, American Journal of Neuroradiology.

[48]  Peter M Jakob,et al.  Mouse MRI using phased‐array coils , 2007, NMR in biomedicine.

[49]  Hao Huang,et al.  Three-dimensional anatomical characterization of the developing mouse brain by diffusion tensor microimaging , 2003, NeuroImage.

[50]  S. Mori,et al.  In vivo and ex vivo diffusion tensor imaging of cuprizone‐induced demyelination in the mouse corpus callosum , 2012, Magnetic resonance in medicine.

[51]  R E Jacobs,et al.  Towards a microMRI atlas of mouse development. , 1999, Computerized medical imaging and graphics : the official journal of the Computerized Medical Imaging Society.

[52]  G. Johnson,et al.  Magnetic Resonance Microscopy of the C57BL Mouse Brain , 2000, NeuroImage.

[53]  Alain Pitiot,et al.  A multimodal, multidimensional atlas of the C57BL/6J mouse brain , 2004, Journal of anatomy.

[54]  Silun Wang,et al.  Characterization of White Matter Injury in a Hypoxic-Ischemic Neonatal Rat Model by Diffusion Tensor MRI , 2008, Stroke.

[55]  J. Frahm,et al.  High-resolution 3D MRI of mouse brain reveals small cerebral structures in vivo , 2002, Journal of Neuroscience Methods.

[56]  Ipek Oguz,et al.  Use of High Resolution 3D Diffusion Tensor Imaging to Study Brain White Matter Development in Live Neonatal Rats , 2011, Front. Psychiatry.

[57]  G. Allan Johnson,et al.  Morphometric analysis of the C57BL/6J mouse brain , 2007, NeuroImage.

[58]  T. A. Carpenter,et al.  Voxel-based morphometry in the R6/2 transgenic mouse reveals differences between genotypes not seen with manual 2D morphometry , 2009, Neurobiology of Disease.

[59]  Anders M. Dale,et al.  Automated segmentation of neuroanatomical structures in multispectral MR microscopy of the mouse brain , 2005, NeuroImage.

[60]  J. Roder,et al.  In Vivo Magnetic Resonance Imaging and Semiautomated Image Analysis Extend the Brain Phenotype for cdf/cdf Mice , 2006, The Journal of Neuroscience.

[61]  P. V. van Zijl,et al.  Three‐dimensional tracking of axonal projections in the brain by magnetic resonance imaging , 1999, Annals of neurology.

[62]  P. V. van Zijl,et al.  A motion correction scheme by twin‐echo navigation for diffusion‐weighted magnetic resonance imaging with multiple RF echo acquisition , 1998, Magnetic resonance in medicine.

[63]  M. Raichle,et al.  Tracking neuronal fiber pathways in the living human brain. , 1999, Proceedings of the National Academy of Sciences of the United States of America.

[64]  J. Michael Tyszka,et al.  Statistical diffusion tensor histology reveals regional dysmyelination effects in the shiverer mouse mutant , 2006, NeuroImage.

[65]  T E Conturo,et al.  Diffusion tensor fiber tracking of human brain connectivity: aquisition methods, reliability analysis and biological results , 2002, NMR in biomedicine.

[66]  Scott Hamilton,et al.  In Vivo 3D Digital Atlas Database of the Adult C57BL/6J Mouse Brain by Magnetic Resonance Microscopy , 2008, Frontiers in neuroanatomy.