High-Throughput Sequencing of Transposable Element Insertions Suggests Adaptive Evolution of the Invasive Asian Tiger Mosquito Towards Temperate Environments
暂无分享,去创建一个
C. Vieira | M. Boulesteix | C. Valiente Moro | P. Mavingui | C. Goubert | H. Henri | G. Minard | Guillaume Minard
[1] C. Vieira,et al. Population genetics of the Asian tiger mosquito Aedes albopictus, an invasive vector of human diseases , 2016, Heredity.
[2] Romain Girod,et al. Differential Susceptibilities of Aedes aegypti and Aedes albopictus from the Americas to Zika Virus , 2016, PLoS neglected tropical diseases.
[3] C. B. Marcondes,et al. Zika virus in Brazil and the danger of infestation by Aedes (Stegomyia) mosquitoes. , 2015, Revista da Sociedade Brasileira de Medicina Tropical.
[4] D. Denlinger,et al. Molecular Physiology of Mosquito Diapause , 2016 .
[5] I. K. Jordan,et al. Transposable element polymorphisms recapitulate human evolution , 2015, Mobile DNA.
[6] P. Herzyk,et al. Double‐digest RAD sequencing using Ion Proton semiconductor platform (ddRADseq‐ion) with nonmodel organisms , 2015, Molecular ecology resources.
[7] Hao Zhang,et al. Genome sequence of the Asian Tiger mosquito, Aedes albopictus, reveals insights into its biology, genetics, and evolution , 2015, Proceedings of the National Academy of Sciences.
[8] C. Valiente Moro,et al. French invasive Asian tiger mosquito populations harbor reduced bacterial microbiota and genetic diversity compared to Vietnamese autochthonous relatives , 2015, Front. Microbiol..
[9] D. Lawson,et al. A draft genome sequence of an invasive mosquito: an Italian Aedes albopictus , 2015, Pathogens and global health.
[10] M. Tahara,et al. Plant Transposable Elements and Their Application to Genetic Analysis via High-throughput Sequencing Platform , 2015 .
[11] R. Lande. Evolution of phenotypic plasticity in colonizing species , 2015, Molecular ecology.
[12] R. Colautti,et al. Contemporary evolution during invasion: evidence for differentiation, natural selection, and local adaptation , 2015, Molecular ecology.
[13] Stuart R. Dennis,et al. Transposable elements as agents of rapid adaptation may explain the genetic paradox of invasive species , 2015, Molecular ecology.
[14] D. Voytas,et al. An RNA polymerase III subunit determines sites of retrotransposon integration , 2015, Science.
[15] Laurent Modolo,et al. UrQt: an efficient software for the Unsupervised Quality trimming of NGS data , 2015, BMC Bioinformatics.
[16] Monica F. Poelchau,et al. Global Transcriptional Dynamics of Diapause Induction in Non-Blood-Fed and Blood-Fed Aedes albopictus , 2015, PLoS neglected tropical diseases.
[17] F. Scolari,et al. Molecular markers for analyses of intraspecific genetic diversity in the Asian Tiger mosquito, Aedes albopictus , 2015, Parasites & Vectors.
[18] Laurent Modolo,et al. De Novo Assembly and Annotation of the Asian Tiger Mosquito (Aedes albopictus) Repeatome with dnaPipeTE from Raw Genomic Reads and Comparative Analysis with the Yellow Fever Mosquito (Aedes aegypti) , 2015, Genome biology and evolution.
[19] Jürgen Gadau,et al. Transposable element islands facilitate adaptation to novel environments in an invasive species , 2014, Nature Communications.
[20] Laurent Excoffier,et al. Expansion load: recessive mutations and the role of standing genetic variation , 2014, bioRxiv.
[21] M. Tahara,et al. Application of iPBS in high-throughput sequencing for the development of retrotransposon-based molecular markers , 2014 .
[22] C. Vieira,et al. Specific Activation of an I-Like Element in Drosophila Interspecific Hybrids , 2014, Genome biology and evolution.
[23] É. Frichot,et al. Genome scan methods against more complex models: when and how much should we trust them? , 2014, Molecular ecology.
[24] Shivani Gupta,et al. Genetic differentiation of invasive Aedes albopictus by RAPD-PCR: implications for effective vector control , 2014, Parasitology Research.
[25] G. Grard,et al. Zika Virus in Gabon (Central Africa) – 2007: A New Threat from Aedes albopictus? , 2014, PLoS neglected tropical diseases.
[26] R Core Team,et al. R: A language and environment for statistical computing. , 2014 .
[27] Sharon R Grossman,et al. Detecting natural selection in genomic data. , 2013, Annual review of genetics.
[28] Monica F. Poelchau,et al. RNA-Seq reveals early distinctions and late convergence of gene expression between diapause and quiescence in the Asian tiger mosquito, Aedes albopictus , 2013, Journal of Experimental Biology.
[29] Philipp W. Messer,et al. Population genomics of rapid adaptation by soft selective sweeps. , 2013, Trends in ecology & evolution.
[30] A. James,et al. The invasive mosquito species Aedes albopictus: current knowledge and future perspectives. , 2013, Trends in parasitology.
[31] V. Kramer,et al. Genetic Analysis of Invasive Aedes albopictus Populations in Los Angeles County, California and Its Potential Public Health Impact , 2013, PloS one.
[32] M. Batzer,et al. LSU Digital Commons LSU Digital Commons Mobile element scanning (ME-Scan) identifies thousands of novel Mobile element scanning (ME-Scan) identifies thousands of novel Alu insertions in diverse human populations Alu insertions in diverse human populations , 2022 .
[33] Monica F. Poelchau,et al. Deep sequencing reveals complex mechanisms of diapause preparation in the invasive mosquito, Aedes albopictus , 2013, Proceedings of the Royal Society B: Biological Sciences.
[34] Josefa González,et al. The impact of transposable elements in environmental adaptation , 2013, Molecular ecology.
[35] T. Cezard,et al. Special features of RAD Sequencing data: implications for genotyping , 2012, Molecular ecology.
[36] N. Becker,et al. Repeated introduction of Aedes albopictus into Germany, July to October 2012 , 2013, Parasitology Research.
[37] R. Bellini,et al. Glacial History of a Modern Invader: Phylogeography and Species Distribution Modelling of the Asian Tiger Mosquito Aedes albopictus , 2012, PloS one.
[38] P. Armbruster,et al. Rapid Adaptive Evolution of Photoperiodic Response during Invasion and Range Expansion across a Climatic Gradient , 2012, The American Naturalist.
[39] C. Vieira,et al. tirant, a Newly Discovered Active Endogenous Retrovirus in Drosophila simulans , 2012, Journal of Virology.
[40] Marcel Martin. Cutadapt removes adapter sequences from high-throughput sequencing reads , 2011 .
[41] S. Narum,et al. Comparison of FST outlier tests for SNP loci under selection , 2011, Molecular ecology resources.
[42] Cristian Chaparro,et al. Transpositional landscape of the rice genome revealed by paired-end mapping of high-throughput re-sequencing data. , 2011, The Plant journal : for cell and molecular biology.
[43] A. Caballero,et al. Comparing three different methods to detect selective loci using dominant markers , 2010, Journal of evolutionary biology.
[44] D. Denlinger,et al. The molecular physiology of increased egg desiccation resistance during diapause in the invasive mosquito, Aedes albopictus , 2010, Proceedings of the Royal Society B: Biological Sciences.
[45] Jinchuan Xing,et al. Mobile element scanning (ME-Scan) by targeted high-throughput sequencing , 2010, BMC Genomics.
[46] Andrew F. Neuwald,et al. Natural Mutagenesis of Human Genomes by Endogenous Retrotransposons , 2010, Cell.
[47] L. Excoffier,et al. Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows , 2010, Molecular ecology resources.
[48] W. Stephan. Genetic hitchhiking versus background selection: the controversy and its implications , 2010, Philosophical Transactions of the Royal Society B: Biological Sciences.
[49] Joseph K. Pickrell,et al. The Genetics of Human Adaptation: Hard Sweeps, Soft Sweeps, and Polygenic Adaptation , 2010, Current Biology.
[50] Aaron R. Quinlan,et al. Bioinformatics Applications Note Genome Analysis Bedtools: a Flexible Suite of Utilities for Comparing Genomic Features , 2022 .
[51] C. Paupy,et al. Aedes albopictus, an arbovirus vector: from the darkness to the light. , 2009, Microbes and infection.
[52] L. Després,et al. Candidate genes revealed by a genome scan for mosquito resistance to a bacterial insecticide: sequence and gene expression variations , 2009, BMC Genomics.
[53] E. Scholte,et al. Introduction, scenarios for establishment and seasonal activity of Aedes albopictus in The Netherlands. , 2009, Vector borne and zoonotic diseases.
[54] L. Després,et al. A MITE-based genotyping method to reveal hundreds of DNA polymorphisms in an animal genome after a few generations of artificial selection , 2008, BMC Genomics.
[55] O. Gaggiotti,et al. A Genome-Scan Method to Identify Selected Loci Appropriate for Both Dominant and Codominant Markers: A Bayesian Perspective , 2008, Genetics.
[56] Y. Qi,et al. Insertion polymorphisms of SINE200 retrotransposons within speciation islands of Anopheles gambiae molecular forms , 2008, Malaria Journal.
[57] C. Biémont,et al. High Genetic Differentiation between the M and S Molecular Forms of Anopheles gambiae in Africa , 2008, PloS one.
[58] Anne-Béatrice Dufour,et al. The ade4 Package: Implementing the Duality Diagram for Ecologists , 2007 .
[59] A. Amores,et al. Rapid and cost-effective polymorphism identification and genotyping using restriction site associated DNA (RAD) markers. , 2007, Genome research.
[60] C. Biémont,et al. Insertion polymorphism of transposable elements and population structure of Anopheles gambiae M and S molecular forms in Cameroon , 2006, Molecular ecology.
[61] Adam Godzik,et al. Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences , 2006, Bioinform..
[62] R. Nielsen. Molecular signatures of natural selection. , 2005, Annual review of genetics.
[63] M. Batzer,et al. Recently integrated human Alu repeats: finding needles in the haystack , 2004, Genetica.
[64] Jerilyn A. Walker,et al. Genetic variation among world populations: inferences from 100 Alu insertion polymorphisms. , 2003, Genome research.
[65] S. Wessler,et al. Transposable element (TE) display and rapid detection of TE insertion polymorphism in the Anopheles gambiae species complex , 2003, Insect molecular biology.
[66] W. J. Kent,et al. BLAT--the BLAST-like alignment tool. , 2002, Genome research.
[67] L. Munstermann,et al. Genetic Structure of Aedes albopictus (Diptera: Culicidae) Populations Based on Mitochondrial ND5 Sequences: Evidence for an Independent Invasion into Brazil and United States , 2002 .
[68] Justin C. Fay,et al. Hitchhiking under positive Darwinian selection. , 2000, Genetics.
[69] R. Bellini,et al. Population structure of Aedes albopictus (Skuse): the mosquito which is colonizing Mediterranean countries , 2000, Heredity.
[70] W Stephan,et al. The hitchhiking effect on the site frequency spectrum of DNA polymorphisms. , 1995, Genetics.
[71] Scott M. Hanson,et al. Cold acclimation, diapause, and geographic origin affect cold hardiness in eggs of Aedes albopictus (Diptera: Culicidae). , 1994, Journal of medical entomology.
[72] H. Aburatani,et al. IRE-bubble PCR: a rapid method for efficient and representative amplification of human genomic DNA sequences from complex sources. , 1994, Genomics.
[73] B. Charlesworth,et al. The effect of deleterious mutations on neutral molecular variation. , 1993, Genetics.
[74] W. Black,et al. Geographic origin of the US and Brazilian Aedes albopictus inferred from allozyme analysis , 1991, Heredity.
[75] F. Tajima. Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. , 1989, Genetics.
[76] W. Black,et al. Breeding structure of a colonising species: Aedes albopictus (Skuse) in the United States , 1988, Heredity.
[77] W. Hawley. The biology of Aedes albopictus. , 1988, Journal of the American Mosquito Control Association. Supplement.
[78] W. Hawley,et al. Aedes albopictus in North America: probable introduction in used tires from northern Asia. , 1987, Science.
[79] J. Gower,et al. Metric and Euclidean properties of dissimilarity coefficients , 1986 .
[80] T. Oda,et al. Studies on the egg diapause and overwintering of Aedes albopictus in Nagasaki , 1981 .
[81] J. M. Smith,et al. The hitch-hiking effect of a favourable gene. , 1974, Genetical research.
[82] R. Lewontin,et al. Distribution of gene frequency as a test of the theory of the selective neutrality of polymorphisms. , 1973, Genetics.