Validation of QTL mapping and transcriptome profiling for identification of candidate genes associated with nitrogen stress tolerance in sorghum
暂无分享,去创建一个
T. Clemente | I. Dweikat | Kan Liu | Chi Zhang | M. Gelli | D. Holding | A. R. Konda
[1] D. Jordan,et al. Whole Genome Sequencing Reveals Potential New Targets for Improving Nitrogen Uptake and Utilization in Sorghum bicolor , 2016, Front. Plant Sci..
[2] A. Good,et al. Identification of Nitrogen Use Efficiency Genes in Barley: Searching for QTLs Controlling Complex Physiological Traits , 2016, Front. Plant Sci..
[3] Yujiao Liu,et al. Mapping and validation of major quantitative trait loci for kernel length in wild barley (Hordeum vulgare ssp. spontaneum) , 2016, BMC Genetics.
[4] B. Liu,et al. Identification and validation of QTLs controlling multiple traits in sorghum , 2016, Crop and Pasture Science.
[5] Yan Xia,et al. SorGSD: a sorghum genome SNP database , 2016, Biotechnology for Biofuels.
[6] Leon Bieber,et al. Sas System For Mixed Models , 2016 .
[7] T. Clemente,et al. Mapping QTLs and association of differentially expressed gene transcripts for multiple agronomic traits under different nitrogen levels in sorghum , 2016, BMC Plant Biology.
[8] G. Burow,et al. Transcriptome profiling and validation of gene based single nucleotide polymorphisms (SNPs) in sorghum genotypes with contrasting responses to cold stress , 2015, BMC Genomics.
[9] A. Link,et al. An adaptive classification model for peptide identification , 2015, BMC Genomics.
[10] Fusuo Zhang,et al. A genetic relationship between nitrogen use efficiency and seedling root traits in maize as revealed by QTL analysis , 2015, Journal of experimental botany.
[11] J. Patil,et al. Detection and validation of stay-green QTL in post-rainy sorghum involving widely adapted cultivar, M35-1 and a popular stay-green genotype B35 , 2014, BMC Genomics.
[12] A. Duarte,et al. Glutathione and proline can coordinately make plants withstand the joint attack of metal(loid) and salinity stresses , 2014, Front. Plant Sci..
[13] K. Kazan,et al. PHYTOCHROME AND FLOWERING TIME1/MEDIATOR25 Regulates Lateral Root Formation via Auxin Signaling in Arabidopsis1[C][W] , 2014, Plant Physiology.
[14] Zhen Zhu,et al. QTL mapping for seedling traits associated with low‐nitrogen tolerance using a set of advanced backcross introgression lines of rice , 2014 .
[15] David Holding,et al. Identification of differentially expressed genes between sorghum genotypes with contrasting nitrogen stress tolerance by genome-wide transcriptional profiling , 2014, BMC Genomics.
[16] Jun Li,et al. Whole-genome sequencing reveals untapped genetic potential in Africa’s indigenous cereal crop sorghum , 2013, Nature Communications.
[17] Ying Zhang,et al. New technologies reduce greenhouse gas emissions from nitrogenous fertilizer in China , 2013, Proceedings of the National Academy of Sciences.
[18] W. Schmidt,et al. PFT1, a transcriptional Mediator complex subunit, controls root hair differentiation through reactive oxygen species (ROS) distribution in Arabidopsis. , 2013, The New phytologist.
[19] Ying Guo,et al. QTL mapping for seedling traits under different nitrogen forms in wheat , 2013, Euphytica.
[20] A. Good,et al. Engineering nitrogen use efficient crop plants: the current status. , 2012, Plant biotechnology journal.
[21] Qi Feng,et al. dentification of QTLs for eight agronomi ally important traits using an ultr-hig-density map based on SNPs generated from high-throughput sequencing in sorghum under contrasting photoperiods , 2012 .
[22] M. Matz,et al. 2b-RAD: a simple and flexible method for genome-wide genotyping , 2012, Nature Methods.
[23] T. Takai,et al. Quantitative trait locus analysis for days-to-heading and morphological traits in an RIL population derived from an extremely late flowering F1 hybrid of sorghum , 2012, Euphytica.
[24] Yunhai Li,et al. The Mediator complex subunit 8 regulates organ size in Arabidopsis thaliana , 2012, Plant signaling & behavior.
[25] M. Rockman. THE QTN PROGRAM AND THE ALLELES THAT MATTER FOR EVOLUTION: ALL THAT'S GOLD DOES NOT GLITTER , 2012, Evolution; international journal of organic evolution.
[26] K. Pillen,et al. Detection of exotic QTLs controlling nitrogen stress tolerance among wild barley introgression lines , 2012, Euphytica.
[27] M. Thomson,et al. Identification and Validation of Quantitative Trait Loci for Agronomic Traits in Advanced Backcross Breeding Lines Derived from Oryza rufipogon × Oryza sativa Cultivar MR219 , 2012, Plant Molecular Biology Reporter.
[28] G. Hammer,et al. Decrease in sorghum grain yield due to the dw3 dwarfing gene is caused by reduction in shoot biomass , 2011 .
[29] Marcela K. Monaco,et al. Functional annotation of the transcriptome of Sorghum bicolor in response to osmotic stress and abscisic acid , 2011, BMC Genomics.
[30] Yan'an Guan,et al. QTL mapping of bio-energy related traits in Sorghum , 2011, Euphytica.
[31] Xianran Li,et al. Single-nucleotide polymorphism discovery by high-throughput sequencing in sorghum , 2011, BMC Genomics.
[32] M. Blaxter,et al. Genome-wide genetic marker discovery and genotyping using next-generation sequencing , 2011, Nature Reviews Genetics.
[33] Robert J. Elshire,et al. A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species , 2011, PloS one.
[34] D. Jordan,et al. Integrating sorghum whole genome sequence information with a compendium of sorghum QTL studies reveals uneven distribution of QTL and of gene-rich regions with significant implications for crop improvement , 2011, Theoretical and Applied Genetics.
[35] Florent Murat,et al. Cross-genome map based dissection of a nitrogen use efficiency ortho-metaQTL in bread wheat unravels concerted cereal genome evolution. , 2011, The Plant journal : for cell and molecular biology.
[36] R. Gutiérrez,et al. A holistic view of nitrogen acquisition in plants. , 2011, Journal of experimental botany.
[37] C. Masclaux-Daubresse,et al. Exploring nitrogen remobilization for seed filling using natural variation in Arabidopsis thaliana , 2011, Journal of experimental botany.
[38] Zhao-Bang Zeng,et al. WINDOWS QTL Cartographer , 2011 .
[39] Zhao-Bang Zeng,et al. Windows QTL Cartographer 2·5 , 2011 .
[40] S. Mohanty,et al. Support for international agricultural research: current status and future challenges. , 2010, New biotechnology.
[41] Ashutosh Kumar Singh,et al. Combining QTL mapping and transcriptome profiling of bulked RILs for identification of functional polymorphism for salt tolerance genes in rice (Oryzasativa L.) , 2010, Molecular Genetics and Genomics.
[42] J. Holland,et al. Estimating and Interpreting Heritability for Plant Breeding: An Update , 2010 .
[43] C. Masclaux-Daubresse,et al. Natural variation of nitrate uptake and nitrogen use efficiency in Arabidopsis thaliana cultivated with limiting and ample nitrogen supply. , 2010, Journal of experimental botany.
[44] W. Friedt,et al. Genetic mapping of QTLs for sugar-related traits in a RIL population of Sorghum bicolor L. Moench , 2010, Theoretical and Applied Genetics.
[45] P. Vitousek,et al. Significant Acidification in Major Chinese Croplands , 2010, Science.
[46] T. Zhu,et al. Increased nitrogen-use efficiency in transgenic rice plants over-expressing a nitrogen-responsive early nodulin gene identified from rice expression profiling. , 2009, Plant, cell & environment.
[47] R. Mulvaney,et al. Synthetic nitrogen fertilizers deplete soil nitrogen: a global dilemma for sustainable cereal production. , 2009, Journal of environmental quality.
[48] C. Ravel,et al. A quantitative genetic study for elucidating the contribution of glutamine synthetase, glutamate dehydrogenase and other nitrogen-related physiological traits to the agronomic performance of common wheat , 2009, Theoretical and Applied Genetics.
[49] Jiankang Wang. Inclusive composite interval mapping of quantitative trait genes. , 2009 .
[50] F. Hochholdinger,et al. Genetic and genomic dissection of maize root development and architecture. , 2009, Current opinion in plant biology.
[51] Xin-ping Chen,et al. Reducing environmental risk by improving N management in intensive Chinese agricultural systems , 2009, Proceedings of the National Academy of Sciences.
[52] E. Pennisi,et al. How Sorghum Withstands Heat and Drought , 2009, Science.
[53] Takuji Sasaki,et al. Plant genomics: Sorghum in sequence , 2009, Nature.
[54] Mihaela M. Martis,et al. The Sorghum bicolor genome and the diversification of grasses , 2009, Nature.
[55] N. Seetharama,et al. Exploration and mapping of microsatellite markers from subtracted drought stress ESTs in Sorghum bicolor (L.) Moench , 2009, Theoretical and Applied Genetics.
[56] A. Kilian,et al. A consensus genetic map of sorghum that integrates multiple component maps and high-throughput Diversity Array Technology (DArT) markers , 2009, BMC Plant Biology.
[57] S. Kresovich,et al. Genetic Improvement of Sorghum as a Biofuel Feedstock: I. QTL for Stem Sugar and Grain Nonstructural Carbohydrates , 2008 .
[58] Nancy F. Hansen,et al. Accurate Whole Human Genome Sequencing using Reversible Terminator Chemistry , 2008, Nature.
[59] Stephen Kresovich,et al. Efficient Mapping of Plant Height Quantitative Trait Loci in a Sorghum Association Population With Introgressed Dwarfing Genes , 2008, Genetics.
[60] F. Tardieu,et al. ’ s Choice Series on the Next Generation of Biotech Crops Quantitative Trait Loci and Crop Performance under Abiotic Stress : Where Do We Stand ? , 2008 .
[61] A. Paterson. Genomics of Sorghum , 2008, International journal of plant genomics.
[62] S. Chapman,et al. Identification of QTL for sugar-related traits in a sweet × grain sorghum (Sorghum bicolor L. Moench) recombinant inbred population , 2008, Molecular Breeding.
[63] D. Jordan,et al. The Effect of Tropical Sorghum Conversion and Inbred Development on Genome Diversity as Revealed by High-Resolution Genotyping , 2008 .
[64] F. Mekbib. Infra-specific folk taxonomy in sorghum (Sorghum bicolor (L.) Moench) in Ethiopia: folk nomenclature, classification, and criteria , 2007, Journal of ethnobiology and ethnomedicine.
[65] Jürg M. Blumenthal,et al. Designing sorghum as a dedicated bioenergy feedstock , 2007 .
[66] B. Ney,et al. The challenge of improving nitrogen use efficiency in crop plants: towards a more central role for genetic variability and quantitative genetics within integrated approaches. , 2007, Journal of experimental botany.
[67] M. Brancourt-Hulmel,et al. Using genotype × nitrogen interaction variables to evaluate the QTL involved in wheat tolerance to nitrogen constraints , 2007, Theoretical and Applied Genetics.
[68] J. Holland,et al. Genetic architecture of complex traits in plants. , 2007, Current opinion in plant biology.
[69] F. Below,et al. Divergent selection for grain protein affects nitrogen use in maize hybrids , 2007 .
[70] S. Bernard,et al. The genetics of nitrogen use in hexaploid wheat: N utilisation, development and yield , 2007, Theoretical and Applied Genetics.
[71] S. Kresovich,et al. Inheritance of inflorescence architecture in sorghum , 2006, Theoretical and Applied Genetics.
[72] W. Frommer,et al. Arabidopsis LHT1 Is a High-Affinity Transporter for Cellular Amino Acid Uptake in Both Root Epidermis and Leaf Mesophyll[W] , 2006, The Plant Cell Online.
[73] D. An,et al. Mapping QTLs for nitrogen uptake in relation to the early growth of wheat (Triticum aestivum L.) , 2006, Plant and Soil.
[74] G. E. Hart,et al. Alignment of genetic maps and QTLs between inter- and intra-specific sorghum populations , 2006, Theoretical and Applied Genetics.
[75] Xianghua Li,et al. Expression Profiles of 10,422 Genes at Early Stage of Low Nitrogen Stress in Rice Assayed using a cDNA Microarray , 2006, Plant Molecular Biology.
[76] Hua Yan,et al. QTLs for low nitrogen tolerance at seedling stage identified using a recombinant inbred line population derived from an elite rice hybrid , 2005, Theoretical and Applied Genetics.
[77] Joaquín Dopazo,et al. Discovering molecular functions significantly related to phenotypes by combining gene expression data and biological information , 2005, Bioinform..
[78] H. Rolletschek,et al. Ectopic Expression of an Amino Acid Transporter (VfAAP1) in Seeds of Vicia narbonensis and Pea Increases Storage Proteins1 , 2005, Plant Physiology.
[79] E. Pang,et al. An introduction to markers, quantitative trait loci (QTL) mapping and marker-assisted selection for crop improvement: The basic concepts , 2005, Euphytica.
[80] C. Engels,et al. Grain yield and kernel weight of two maize genotypes differing in nitrogen use efficiency at various levels of nitrogen and carbohydrate availability during flowering and grain filling , 2005, Plant and Soil.
[81] A. Good,et al. Can less yield more? Is reducing nutrient input into the environment compatible with maintaining crop production? , 2004, Trends in plant science.
[82] B. Hirel,et al. An approach to the genetics of nitrogen use efficiency in maize. , 2004, Journal of experimental botany.
[83] C. Dangaria,et al. Grain Yield in Pearl Millet in Relation to Source Size and Proximity to Sink , 2003, Photosynthetica.
[84] J. Li,et al. Identification of QTLs affecting traits of agronomic importance in a recombinant inbred population derived from a subspecific rice cross , 1996, Theoretical and Applied Genetics.
[85] M. G. Pereira,et al. Identification of genomic regions affecting plant height in sorghum and maize , 1995, Theoretical and Applied Genetics.
[86] J. Maranville,et al. Physiological adaptations for nitrogen use efficiency in sorghum† , 2004, Plant and Soil.
[87] H. Agrama,et al. Identification of quantitative trait loci for nitrogen use efficiency in maize , 2004, Molecular breeding.
[88] Gurmukh S Johal,et al. Loss of an MDR Transporter in Compact Stalks of Maize br2 and Sorghum dw3 Mutants , 2003, Science.
[89] A. Fischer,et al. Mapping of QTL associated with nitrogen storage and remobilization in barley (Hordeum vulgare L.) leaves. , 2003, Journal of experimental botany.
[90] O. Loudet,et al. Quantitative Trait Loci Analysis of Nitrogen Use Efficiency in Arabidopsis , 2003, Plant Physiology.
[91] N. Seetharama,et al. QTL mapping of stay-green in two sorghum recombinant inbred populations , 2002, Theoretical and Applied Genetics.
[92] Barry E. Smith,et al. Nitrogenase Reveals Its Inner Secrets , 2002, Science.
[93] L. Watson,et al. Ancestors of white clover (Trifolium repens L.), as revealed by isozyme polymorphisms , 2002, Theoretical and Applied Genetics.
[94] M. Murray,et al. All that's gold does not glitter , 2002 .
[95] R. Voorrips. MapChart: software for the graphical presentation of linkage maps and QTLs. , 2002, The Journal of heredity.
[96] D. Lammer,et al. Perennial wheat: The development of a sustainable cropping system for the U.S. Pacific Northwest , 2001 .
[97] P. Langridge,et al. Trends in genetic and genome analyses in wheat: a review , 2001 .
[98] M. Yano,et al. Mapping of QTLs associated with cytosolic glutamine synthetase and NADH-glutamate synthase in rice (Oryza sativa L.). , 2001, Journal of experimental botany.
[99] D. Sandhu,et al. Identification and physical localization of useful genes and markers to a major gene-rich region on wheat group 1S chromosomes. , 2001, Genetics.
[100] D. Butler,et al. Identification of genomic regions associated with stay green in sorghum by testing RILs in multiple environments , 2000, Theoretical and Applied Genetics.
[101] D. Beghin,et al. Genetic differences for nitrogen uptake and nitrogen utilisation efficiencies in winter wheat. , 2000 .
[102] O. Crasta,et al. Mapping of post-flowering drought resistance traits in grain sorghum: association between QTLs influencing premature senescence and maturity , 1999, Molecular and General Genetics MGG.
[103] P. Waggoner,et al. Nitrogen fertilizer: retrospect and prospect. , 1999, Proceedings of the National Academy of Sciences of the United States of America.
[104] A. L. Garside,et al. Season, nitrogen rate, and plant type affect nitrogen uptake and nitrogen use efficiency in rice , 1998 .
[105] D. Bush,et al. LHT1, A Lysine- and Histidine-Specific Amino Acid Transporter in Arabidopsis , 1997, Plant physiology.
[106] A. Paterson,et al. Comparative analysis of QTLs affecting plant height and maturity across the Poaceae, in reference to an interspecific sorghum population. , 1995, Genetics.
[107] H. Marschner. Mineral Nutrition of Higher Plants, Second Edition , 1995 .
[108] H. Marschner. Preface to Second Edition , 1995 .
[109] Y. Benjamini,et al. Controlling the false discovery rate: a practical and powerful approach to multiple testing , 1995 .
[110] R. Doerge,et al. Empirical threshold values for quantitative trait mapping. , 1994, Genetics.
[111] Matthijs Tollenaar,et al. N uptake, N partitioning, and photosynthetic N-use efficiency of an old and a new maize hybrid , 1994 .
[112] J. Maranville,et al. Evaluation of Alternative Screening Criteria for Selecting Nitrogen-Use Efficient Genotypes in Sorghum , 1992 .
[113] W. Jackson,et al. Analysis and Interpretation of Factors Which Contribute to Efficiency of Nitrogen Utilization1 , 1982 .
[114] H. Doggett. Yield Increase from Sorghum Hybrids , 1967, Nature.
[115] A. J. Casady. Effect of a Single Height Gene (Dw3) of Sorghum vulgare Pers. on Certain Culm and Leaf Blade Characteristics 1 , 1967 .
[116] C. Brim. A Modified Pedigree Method of Selection in Soybeans 1 , 1966 .
[117] J. E. Freeman,et al. Effects of Height Mutations on Grain Yield in Sorghum 1 , 1965 .