Tissue-specific Co-expression of Long Non-coding and Coding RNAs Associated with Breast Cancer
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Jiali Han | Yunlong Liu | X. Rao | Chunyan He | Wenting Wu | Y. Hao | Erin K. Wagner | Jinhui Chen | A. Storniolo | H. Dai
[1] F. Pauler,et al. Long non-coding RNAs display higher natural expression variation than protein-coding genes in healthy humans , 2016, Genome Biology.
[2] Jindan Yu,et al. LncRNA HOTAIR enhances ER signaling and confers tamoxifen resistance in breast cancer , 2015, Oncogene.
[3] Minoru Yoshida,et al. MALAT1 long non-coding RNA in cancer. , 2016, Biochimica et biophysica acta.
[4] L. Pusztai,et al. A genome-wide approach to link genotype to clinical outcome by utilizing next generation sequencing and gene chip data of 6,697 breast cancer patients , 2015, Genome Medicine.
[5] A. Chinnaiyan,et al. Long noncoding RNAs in cancer: from function to translation. , 2015, Trends in cancer.
[6] Paul L. Roebuck,et al. TANRIC: An Interactive Open Platform to Explore the Function of lncRNAs in Cancer. , 2015, Cancer research.
[7] Ruifeng Lu,et al. Microarray Profiling and Co-Expression Network Analysis of LncRNAs and mRNAs in Neonatal Rats Following Hypoxic-ischemic Brain Damage , 2015, Scientific Reports.
[8] Satyanarayan Rao,et al. Long noncoding RNAs in development and cancer: potential biomarkers and therapeutic targets , 2015, Molecular and Cellular Therapies.
[9] D. Gallie. Faculty Opinions recommendation of The Xist lncRNA interacts directly with SHARP to silence transcription through HDAC3. , 2015 .
[10] J. Rinn,et al. Localization and abundance analysis of human lncRNAs at single-cell and single-molecule resolution , 2015, Genome Biology.
[11] Myles Brown,et al. Loss of estrogen-regulated microRNA expression increases HER2 signaling and is prognostic of poor outcome in luminal breast cancer. , 2015, Cancer research.
[12] James T. Elder,et al. Analysis of long non-coding RNAs highlights tissue-specific expression patterns and epigenetic profiles in normal and psoriatic skin , 2015, Genome Biology.
[13] A. Børresen-Dale,et al. Long Non-Coding RNAs Differentially Expressed between Normal versus Primary Breast Tumor Tissues Disclose Converse Changes to Breast Cancer-Related Protein-Coding Genes , 2014, PloS one.
[14] Lorenzo Farina,et al. Computational analysis identifies a sponge interaction network between long non-coding RNAs and messenger RNAs in human breast cancer , 2014, BMC Systems Biology.
[15] X. Jianhua,et al. Knockdown of CETN1 inhibits breast cancer cells proliferation. , 2014, Journal of B.U.ON. : official journal of the Balkan Union of Oncology.
[16] Zhiming Zhang,et al. Expression and Clinical Significance of Matrix Metalloproteinase-9 in Lymphatic Invasiveness and Metastasis of Breast Cancer , 2014, PloS one.
[17] Lawrence C. LaPointe,et al. CAHM, a long non-coding RNA gene hypermethylated in colorectal neoplasia , 2014, Epigenetics.
[18] M. Sydes,et al. A genome wide association study (GWAS) providing evidence of an association between common genetic variants and late radiotherapy toxicity. , 2014, Radiotherapy and oncology : journal of the European Society for Therapeutic Radiology and Oncology.
[19] L. Attardi,et al. Unravelling mechanisms of p53-mediated tumour suppression , 2014, Nature Reviews Cancer.
[20] Andreas Krämer,et al. Causal analysis approaches in Ingenuity Pathway Analysis , 2013, Bioinform..
[21] Peggy Hall,et al. The NHGRI GWAS Catalog, a curated resource of SNP-trait associations , 2013, Nucleic Acids Res..
[22] Baiping Wu,et al. Proteomic analysis reveals that MAEL, a component of nuage, interacts with stress granule proteins in cancer cells. , 2014, Oncology reports.
[23] K. Rajagopalan,et al. CETN1 is a cancer testis antigen with expression in prostate and pancreatic cancers , 2013, Biomarker Research.
[24] Jaana M. Hartikainen,et al. Large-scale genotyping identifies 41 new loci associated with breast cancer risk , 2013, Nature Genetics.
[25] Yunlong Liu,et al. NGSUtils: a software suite for analyzing and manipulating next-generation sequencing datasets , 2013, Bioinform..
[26] Albert E. Almada,et al. Divergent transcription of long noncoding RNA/mRNA gene pairs in embryonic stem cells , 2013, Proceedings of the National Academy of Sciences.
[27] Xiaoke Ma,et al. Long non-coding RNAs function annotation: a global prediction method based on bi-colored networks , 2012, Nucleic acids research.
[28] Xiaoke Ma,et al. Long non-coding RNAs function annotation : a global prediction method based on bicolored networks , 2013 .
[29] Andrew H. Beck,et al. Transcriptional profiling of long non-coding RNAs and novel transcribed regions across a diverse panel of archived human cancers , 2012, Genome Biology.
[30] Yurii S. Aulchenko,et al. Genome-Wide Association Study Identifies Novel Loci Associated with Circulating Phospho- and Sphingolipid Concentrations , 2012, PLoS genetics.
[31] Susumu Goto,et al. KEGG for integration and interpretation of large-scale molecular data sets , 2011, Nucleic Acids Res..
[32] Yan Wang,et al. Long non-coding RNAs: versatile master regulators of gene expression and crucial players in cancer. , 2012, American journal of translational research.
[33] Howard Y. Chang,et al. Genomic maps of long noncoding RNA occupancy reveal principles of RNA-chromatin interactions. , 2011, Molecular cell.
[34] D. Cacchiarelli,et al. A Long Noncoding RNA Controls Muscle Differentiation by Functioning as a Competing Endogenous RNA , 2011, Cell.
[35] Cole Trapnell,et al. Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses. , 2011, Genes & development.
[36] J. Gustafsson,et al. The different roles of ER subtypes in cancer biology and therapy , 2011, Nature Reviews Cancer.
[37] J. Rinn,et al. lincRNAs act in the circuitry controlling pluripotency and differentiation , 2011, Nature.
[38] S. Elledge,et al. A DNA Damage Response Screen Identifies RHINO, a 9-1-1 and TopBP1 Interacting Protein Required for ATR Signaling , 2011, Science.
[39] Howard Y. Chang,et al. Long noncoding RNAs and human disease. , 2011, Trends in cell biology.
[40] Carolyn J. Brown,et al. The functional role of long non-coding RNA in human carcinomas , 2011, Molecular Cancer.
[41] T. Livache,et al. TOX4 and its binding partners recognize DNA adducts generated by platinum anticancer drugs. , 2011, Archives of biochemistry and biophysics.
[42] Shuli Kang,et al. Large-scale prediction of long non-coding RNA functions in a coding–non-coding gene co-expression network , 2011, Nucleic acids research.
[43] Antonio de las Morenas,et al. Gene Expression Profiles of Estrogen Receptor–Positive and Estrogen Receptor–Negative Breast Cancers Are Detectable in Histologically Normal Breast Epithelium , 2010, Clinical Cancer Research.
[44] Yusuke Nakamura,et al. Involvement of C12orf32 overexpression in breast carcinogenesis. , 2010, International journal of oncology.
[45] Mark D. Robinson,et al. edgeR: a Bioconductor package for differential expression analysis of digital gene expression data , 2009, Bioinform..
[46] F. Balkwill. Tumour necrosis factor and cancer , 2009, Nature Reviews Cancer.
[47] J. Mattick,et al. Long non-coding RNAs: insights into functions , 2009, Nature Reviews Genetics.
[48] C. Ponting,et al. Evolution and Functions of Long Noncoding RNAs , 2009, Cell.
[49] Ralf Herwig,et al. ConsensusPathDB—a database for integrating human functional interaction networks , 2008, Nucleic Acids Res..
[50] Cole Trapnell,et al. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome , 2009, Genome Biology.
[51] J. Issa,et al. Identification of Novel Tumor Markers in Prostate, Colon and Breast Cancer by Unbiased Methylation Profiling , 2008, PLoS ONE.
[52] Victoria Kristina Perry,et al. Gene expression abnormalities in histologically normal breast epithelium of breast cancer patients , 2007, International journal of cancer.
[53] S. Salzberg,et al. The Transcriptional Landscape of the Mammalian Genome , 2005, Science.
[54] H. Horvitz,et al. MicroRNA expression profiles classify human cancers , 2005, Nature.
[55] A. Balmain,et al. TGF-beta signaling in tumor suppression and cancer progression. , 2001, Nature genetics.
[56] T. Mukai,et al. A novel imprinted gene, KCNQ1DN, within the WT2 critical region of human chromosome 11p15.5 and its reduced expression in Wilms' tumors. , 2000, Journal of biochemistry.
[57] M. Ashburner,et al. Gene Ontology: tool for the unification of biology , 2000, Nature Genetics.
[58] Y. Benjamini,et al. Controlling the false discovery rate: a practical and powerful approach to multiple testing , 1995 .