Variation, patterns, and temporal stability of DNA methylation: considerations for epigenetic epidemiology
暂无分享,去创建一个
Hein Putter | Dorret I Boomsma | Gonneke Willemsen | J Wouter Jukema | H. Putter | G. Willemsen | D. Boomsma | J. Jukema | P. Slagboom | B. Heijmans | D. Kremer | P Eline Slagboom | R. P. Talens | Bastiaan T Heijmans | E. Tobi | Dennis Kremer | Elmar W Tobi | Rudolf P Talens | D. Boomsma
[1] Brady T. West,et al. Linear Mixed Models: A Practical Guide Using Statistical Software , 2006 .
[2] D. Bonthron,et al. The human GNAS1 gene is imprinted and encodes distinct paternally and biallelically expressed G proteins. , 1998, Proceedings of the National Academy of Sciences of the United States of America.
[3] John M. Greally,et al. A pipeline for the quantitative analysis of CG dinucleotide methylation using mass spectrometry , 2009, Bioinform..
[4] A. Petronis,et al. Human morbid genetics revisited: relevance of epigenetics. , 2001, Trends in genetics : TIG.
[5] Douglas G. Altman,et al. Practical statistics for medical research , 1990 .
[6] A. Feinberg,et al. Loss of IGF2 Imprinting: A Potential Marker of Colorectal Cancer Risk , 2003, Science.
[7] P. Slagboom,et al. The epigenome: Archive of the prenatal environment , 2009, Epigenetics.
[8] T. Kouzarides. Chromatin Modifications and Their Function , 2007, Cell.
[9] Thomas Lengauer,et al. Inter-individual variation of DNA methylation and its implications for large-scale epigenome mapping , 2008, Nucleic acids research.
[10] T. Bestor,et al. Dnmt3L and the Establishment of Maternal Genomic Imprints , 2001, Science.
[11] A. Feinberg,et al. Intra-individual change over time in DNA methylation with familial clustering. , 2008, JAMA.
[12] Ji-Eun Kim. Regulation of tumor necrosis factor-alpha induced apoptosis via posttranslational modifications in a human colon adenocarcinoma cell line , 2004 .
[13] P. Tam. The International HapMap Consortium. The International HapMap Project (Co-PI of Hong Kong Centre which responsible for 2.5% of genome) , 2003 .
[14] D. Bonthron,et al. An imprinted antisense transcript at the human GNAS1 locus. , 2000, Human molecular genetics.
[15] James D. Brenton,et al. Somatically acquired hypomethylation of IGF2 in breast and colorectal cancer , 2008, Human molecular genetics.
[16] A. Bird,et al. Epigenetic regulation of gene expression: how the genome integrates intrinsic and environmental signals , 2003, Nature Genetics.
[17] R. Waterland,et al. Epigenetic epidemiology of the developmental origins hypothesis. , 2007, Annual review of nutrition.
[18] M. Turunen,et al. Epigenetics and atherosclerosis. , 2009, Biochimica et biophysica acta.
[19] S Ramchandani,et al. DNA methylation is a reversible biological signal. , 1999, Proceedings of the National Academy of Sciences of the United States of America.
[20] Hyun-Dong Chang,et al. IL-10 Is Excluded from the Functional Cytokine Memory of Human CD4+ Memory T Lymphocytes1 , 2007, The Journal of Immunology.
[21] Hein Putter,et al. Persistent epigenetic differences associated with prenatal exposure to famine in humans , 2008, Proceedings of the National Academy of Sciences.
[22] Rainer Schwaab,et al. Gender specific differences in levels of DNA methylation at selected loci from human total blood: a tendency toward higher methylation levels in males , 2007, Human Genetics.
[23] A. Feinberg. Epigenetics at the epicenter of modern medicine. , 2008, JAMA.
[24] E. Lander,et al. The Mammalian Epigenome , 2007, Cell.
[25] J. Herman,et al. Methylation-specific PCR: a novel PCR assay for methylation status of CpG islands. , 1996, Proceedings of the National Academy of Sciences of the United States of America.
[26] Lee E. Edsall,et al. Human DNA methylomes at base resolution show widespread epigenomic differences , 2009, Nature.
[27] L. Shaffer,et al. Allele-specific methylation of a functional CTCF binding site upstream of MEG3 in the human imprinted domain of 14q32 , 2005, Chromosome Research.
[28] H. Putter,et al. DNA methylation differences after exposure to prenatal famine are common and timing- and sex-specific. , 2009, Human molecular genetics.
[29] M. Wabitsch,et al. Leptin Gene Expression in Human Preadipocytes Is Switched on by Maturation-induced Demethylation of Distinct CpGs in Its Proximal Promoter* , 2002, The Journal of Biological Chemistry.
[30] G J Blauw,et al. Cohort profile: the Dutch Hunger Winter families study. , 2007, International journal of epidemiology.
[31] Michael J Meaney,et al. Epigenetic programming by maternal behavior , 2004, Nature Neuroscience.
[32] Tom H. Pringle,et al. The human genome browser at UCSC. , 2002, Genome research.
[33] Zachary D. Smith,et al. High-throughput bisulfite sequencing in mammalian genomes. , 2009, Methods.
[34] P. Sullivan,et al. Genome-wide association of major depression: description of samples for the GAIN Major Depressive Disorder Study: NTR and NESDA biobank projects , 2008, European Journal of Human Genetics.
[35] M. Pufulete,et al. The Relationship between Gene-Specific DNA Methylation in Leukocytes and Normal Colorectal Mucosa in Subjects with and without Colorectal Tumors , 2009, Cancer Epidemiology Biomarkers & Prevention.
[36] Antony V. Cox,et al. Open access, freely available online PLoS BIOLOGY DNA Methylation Profiling of the Human Major Histocompatibility Complex: A Pilot Study , 2022 .
[37] Kimberly D Siegmund,et al. Epigenetic profiling of somatic tissues from human autopsy specimens identifies tissue- and individual-specific DNA methylation patterns. , 2009, Human molecular genetics.
[38] Christina Thaller,et al. Enhanced anxiety and stress-induced corticosterone release are associated with increased Crh expression in a mouse model of Rett syndrome , 2006, Proceedings of the National Academy of Sciences.
[39] Long-Cheng Li,et al. MethPrimer: designing primers for methylation PCRs , 2002, Bioinform..
[40] G. Gilbert. Linear Mixed Models: A Practical Guide Using Statistical Software , 2008 .
[41] K. Sullivan,et al. Epigenetic Regulation of Tumor Necrosis Factor Alpha , 2007, Molecular and Cellular Biology.
[42] G. Martin. Epigenetic drift in aging identical twins. , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[43] Tony Kouzarides,et al. SnapShot: Histone-Modifying Enzymes , 2007, Cell.
[44] Philip Stanier,et al. Conserved methylation imprints in the human and mouse GRB10 genes with divergent allelic expression suggests differential reading of the same mark. , 2003, Human molecular genetics.
[45] Lanlan Shen,et al. Methods of DNA methylation analysis , 2007, Current opinion in clinical nutrition and metabolic care.
[46] Dorret I Boomsma,et al. Heritable rather than age-related environmental and stochastic factors dominate variation in DNA methylation of the human IGF2/H19 locus. , 2007, Human molecular genetics.
[47] A. Bird,et al. DNA methylation landscapes: provocative insights from epigenomics , 2008, Nature Reviews Genetics.
[48] A. Feinberg,et al. LIT1, an imprinted antisense RNA in the human KvLQT1 locus identified by screening for differentially expressed transcripts using monochromosomal hybrids. , 1999, Human molecular genetics.
[49] Peter Gibbs,et al. Cytosine methylation profiling of cancer cell lines , 2008, Proceedings of the National Academy of Sciences.
[50] John K Field,et al. Quantitative high-throughput analysis of DNA methylation patterns by base-specific cleavage and mass spectrometry. , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[51] C. Allis,et al. DNMT3L connects unmethylated lysine 4 of histone H3 to de novo methylation of DNA , 2007, Nature.
[52] Danielle Posthuma,et al. Netherlands Twin Register: From Twins to Twin Families , 2006, Twin Research and Human Genetics.
[53] R. Rosenfeld. Nature , 2009, Otolaryngology--head and neck surgery : official journal of American Academy of Otolaryngology-Head and Neck Surgery.
[54] Toshihiro Tanaka. The International HapMap Project , 2003, Nature.
[55] J. Landry,et al. Long Terminal Repeats Are Used as Alternative Promoters for the Endothelin B Receptor and Apolipoprotein C-I Genes in Humans* , 2001, The Journal of Biological Chemistry.
[56] J. Krushkal,et al. Association Between Paternally Inherited Haplotypes Upstream of the Insulin Gene and Umbilical Cord IGF-II Levels , 2007, Pediatric Research.
[57] T. Spector,et al. Epigenetic differences arise during the lifetime of monozygotic twins. , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[58] Joel Schwartz,et al. Decline in genomic DNA methylation through aging in a cohort of elderly subjects , 2009, Mechanisms of Ageing and Development.
[59] Sebastian Böcker,et al. High-throughput MALDI-TOF discovery of genomic sequence polymorphisms. , 2003, Genome research.
[60] T. Langmann,et al. Screening for functional sequence variations and mutations in ABCA1. , 2004, Atherosclerosis.
[61] Terence Dwyer,et al. American Journal of Epidemiology Review Prospects for Epigenetic Epidemiology , 2022 .
[62] M. Leppert,et al. Familial aggregation of abnormal methylation of parental alleles at the IGF2/H19 and IGF2R differentially methylated regions. , 2003, Human molecular genetics.
[63] C. Lavazec,et al. Expression switching in the stevor and Pfmc‐2TM superfamilies in Plasmodium falciparum , 2007, Molecular microbiology.
[64] A. Feinberg,et al. Genome-wide methylation analysis of human colon cancer reveals similar hypo- and hypermethylation at conserved tissue-specific CpG island shores , 2008, Nature Genetics.
[65] S. Clark,et al. Genomic profiling of CpG methylation and allelic specificity using quantitative high-throughput mass spectrometry: critical evaluation and improvements , 2007, Nucleic acids research.
[66] Robert A. Waterland,et al. Transposable Elements: Targets for Early Nutritional Effects on Epigenetic Gene Regulation , 2003, Molecular and Cellular Biology.
[67] J. Jukema,et al. Epigenetic histone acetylation modifiers in vascular remodelling – new targets for therapy in cardiovascular disease , 2008, Netherlands heart journal : monthly journal of the Netherlands Society of Cardiology and the Netherlands Heart Foundation.