An anatomic transcriptional atlas of human glioblastoma
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Fuhui Long | Eric Olson | Nameeta Shah | Allan R. Jones | David Feng | Chinh Dang | Leonard Kuan | Don Marsh | Lydia Ng | Andrew Sodt | Amy Bernard | Shiella Caldejon | Wayne Wakeman | John W. Phillips | Ed Lein | Aaron Szafer | Felix Lee | Allan Jones | Rachel Dalley | Bart Keogh | Guangyu Gu | Michael J Hawrylycz | Antonio Iavarone | Tim Dolbeare | Melissa Reding | Robert Howard | Ali Kriedberg | Kiet Ngo | Patrick J Cimino | C. Lau | Leonard Kuan | C. Slaughterbeck | Wayne Wakeman | David Feng | Kevin Joines | M. Hawrylycz | J. Hohmann | Paul E Wohnoutka | Amy Bernard | Chinh Dang | Kimberly A. Smith | Darren Bertagnolli | J. Goldy | N. Shapovalova | A. Szafer | N. Dee | E. Lein | Fuhui Long | Andrew F. Boe | S. Datta | Tsega Desta | Tim Dolbeare | Amanda J. Ebbert | Tracy A. Lemon | Lydia Ng | R. Puchalski | Z. Riley | Andrew Sodt | A. Iavarone | R. Rostomily | C. Cobbs | J. Barnholtz-Sloan | N. Shah | Mike Chapin | R. Dalley | Benjamin W Gregor | Robert E. Howard | M. Reding | B. Keogh | Krissy Brouner | Stephanie Butler | S. Caldejon | G. Gee | Lindsey Gourley | G. Gu | Felix Lee | Naveed Mastan | E. Olson | D. Sandman | Jae-Geun Yoon | G. Foltz | H. Gittleman | Kris Bickley | N. Dotson | Michael Fisher | Nika Hejazinia | D. Rosen | C. Keene | M. Berens | Ali Kriedberg | E. Mott | Kiet Ngo | J. Lathia | Xu Feng | Farrokh R Farrokhi | Michael E Berens | Jeremy Miller | Steve R Nomura | Michael Lankerovich | P. Hothi | Hwahyung Lee | Chantal Murthy | Graham Stockdale | Steven J White | D. Marsh | J. Barnholtz-Sloan | P. Cimino | M. Uppin | S. Rostad | Tsega Desta | C Dirk Keene | Charles Cobbs | Nick Dee | Chris Lau | Robert C Rostomily | Justin D Lathia | Tracy Lemon | Darren Bertagnolli | Andrew F Boe | Jeff Goldy | Kimberly A Smith | Parvinder Hothi | Haley R Gittleman | Kris Bickley | Krissy Brouner | Nadezhda Dotson | Michael Fisher | David Sandman | John W Phillips | Nadiya Shapovalova | Shiella D. Caldejon | Ralph B Puchalski | Jeremy Miller | Jae-Guen Yoon | Michael Lankerovich | Stephanie Butler | Mike Chapin | Suvro Datta | Amanda Ebbert | Xu Feng | Garrett Gee | Lindsey Gourley | Nika Hejazinia | John Hohmann | Kevin Joines | Hwahyung Lee | Naveed Mastan | Erika Mott | Chantal Murthy | Zack Riley | David Rosen | Clifford R Slaughterbeck | Graham Stockdale | Jill S Barnholtz-Sloan | Megha S Uppin | Steven W Rostad | Greg D Foltz | Garrett Gee | B. Gregor | L. Kuan | Erika Mott | Paul E. Wohnoutka | Farrokh R. Farrokhi | A. Boe
[1] Joshua M. Korn,et al. Comprehensive genomic characterization defines human glioblastoma genes and core pathways , 2008, Nature.
[2] Jacob Cohen. A Coefficient of Agreement for Nominal Scales , 1960 .
[3] Emily J. Girard,et al. Deep sequencing of multiple regions of glial tumors reveals spatial heterogeneity for mutations in clinically relevant genes , 2014, Genome Biology.
[4] Raul Rabadan,et al. The integrated landscape of driver genomic alterations in glioblastoma , 2013, Nature Genetics.
[5] Antonio Criminisi,et al. Decision Forests for Computer Vision and Medical Image Analysis , 2013, Advances in Computer Vision and Pattern Recognition.
[6] E. Chang,et al. Purification and Characterization of Progenitor and Mature Human Astrocytes Reveals Transcriptional and Functional Differences with Mouse , 2016, Neuron.
[7] S. Gabriel,et al. Integrated genomic analysis identifies clinically relevant subtypes of glioblastoma characterized by abnormalities in PDGFRA, IDH1, EGFR, and NF1. , 2010, Cancer cell.
[8] Andrew Collins,et al. TFG, a target of chromosome translocations in lymphoma and soft tissue tumors, fuses to GPR128 in healthy individuals , 2010, Haematologica.
[9] Hyunggee Kim,et al. CD133 Regulates IL-1β Signaling and Neutrophil Recruitment in Glioblastoma , 2017, Molecules and cells.
[10] Subha Madhavan,et al. Rembrandt: Helping Personalized Medicine Become a Reality through Integrative Translational Research , 2009, Molecular Cancer Research.
[11] C. Culling. 27 – Cytology technique , 1985 .
[12] Mark D. Robinson,et al. edgeR: a Bioconductor package for differential expression analysis of digital gene expression data , 2009, Bioinform..
[13] Todd C. Hollon,et al. Rapid intraoperative histology of unprocessed surgical specimens via fibre-laser-based stimulated Raman scattering microscopy , 2017, Nature Biomedical Engineering.
[14] Edward F. Chang,et al. Tumor Evolution of Glioma-Intrinsic Gene Expression Subtypes Associates with Immunological Changes in the Microenvironment. , 2017, Cancer cell.
[15] S. Horvath,et al. Development of a Real-time RT-PCR Assay for Detecting EGFRvIII in Glioblastoma Samples , 2008, Clinical Cancer Research.
[16] Atique U. Ahmed,et al. Multiplexed RNAi therapy against brain tumor-initiating cells via lipopolymeric nanoparticle infusion delays glioblastoma progression , 2017, Proceedings of the National Academy of Sciences.
[17] Steven J. M. Jones,et al. Comprehensive, Integrative Genomic Analysis of Diffuse Lower-Grade Gliomas. , 2015, The New England journal of medicine.
[18] A. Kriegstein,et al. Single-cell profiling of human gliomas reveals macrophage ontogeny as a basis for regional differences in macrophage activation in the tumor microenvironment , 2017, Genome Biology.
[19] C. Cobbs,et al. MGMT methylation in glioblastoma: tale of the tail. , 2015, Neuro-oncology.
[20] Antonio Criminisi,et al. Regression forests for efficient anatomy detection and localization in computed tomography scans , 2013, Medical Image Anal..
[21] R. Mirimanoff,et al. MGMT gene silencing and benefit from temozolomide in glioblastoma. , 2005, The New England journal of medicine.
[22] Chibo Hong,et al. DNA Methylation and Somatic Mutations Converge on the Cell Cycle and Define Similar Evolutionary Histories in Brain Tumors. , 2015, Cancer cell.
[23] Michael Unser,et al. Elastic registration of biological images using vector-spline regularization , 2005, IEEE Transactions on Biomedical Engineering.
[24] J. Akers,et al. RNA-seq of 272 gliomas revealed a novel, recurrent PTPRZ1-MET fusion transcript in secondary glioblastomas , 2014, Genome research.
[25] Ash A. Alizadeh,et al. Robust enumeration of cell subsets from tissue expression profiles , 2015, Nature Methods.
[26] Lisa C. Wallace,et al. Targeting Glioma Stem Cells through Combined BMI1 and EZH2 Inhibition , 2017, Nature Medicine.
[27] Y. Matsumoto,et al. Fibroblast growth factor 13 regulates glioma cell invasion and is important for bevacizumab-induced glioma invasion , 2018, Oncogene.
[28] D. Lindgren,et al. CD44 Interacts with HIF-2α to Modulate the Hypoxic Phenotype of Perinecrotic and Perivascular Glioma Cells. , 2017, Cell reports.
[29] D. Stanimirovic,et al. Molecular markers of extracellular matrix remodeling in glioblastoma vessels: Microarray study of laser‐captured glioblastoma vessels , 2007, Glia.
[30] Cole Trapnell,et al. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome , 2009, Genome Biology.
[31] Yongmin Kim,et al. Edge-guided boundary delineation in prostate ultrasound images , 2000, IEEE Transactions on Medical Imaging.
[32] Gary D Bader,et al. Single cell-derived clonal analysis of human glioblastoma links functional and genomic heterogeneity , 2015, Proceedings of the National Academy of Sciences.
[33] Benjamin E. Gross,et al. The cBio cancer genomics portal: an open platform for exploring multidimensional cancer genomics data. , 2012, Cancer discovery.
[34] Pablo Tamayo,et al. Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[35] Hakho Lee,et al. MicroRNA Signatures and Molecular Subtypes of Glioblastoma: The Role of Extracellular Transfer , 2017, Stem cell reports.
[36] V. P. Collins,et al. Intratumor heterogeneity in human glioblastoma reflects cancer evolutionary dynamics , 2013, Proceedings of the National Academy of Sciences.
[37] L. Hood,et al. TGFβ‐Responsive HMOX1 Expression Is Associated with Stemness and Invasion in Glioblastoma Multiforme , 2016, Stem cells.
[38] PDGF Family Expression in Glioblastoma Multiforme: Data Compilation from Ivy Glioblastoma Atlas Project Database , 2017, Scientific Reports.
[39] J. Barnholtz-Sloan,et al. CBTRUS statistical report: primary brain and central nervous system tumors diagnosed in the United States in 2007-2011. , 2012, Neuro-oncology.
[40] Jing Chen,et al. ToppGene Suite for gene list enrichment analysis and candidate gene prioritization , 2009, Nucleic Acids Res..
[41] Mary Goldman,et al. The UCSC Genome Browser database: extensions and updates 2013 , 2012, Nucleic Acids Res..
[42] A. von Deimling,et al. PCR‐ and Restriction Endonuclease‐Based Detection of IDH1 Mutations , 2010, Brain pathology.
[43] S Rozen,et al. Primer3 on the WWW for general users and for biologist programmers. , 2000, Methods in molecular biology.
[44] R. Mirimanoff,et al. Radiotherapy plus concomitant and adjuvant temozolomide for glioblastoma. , 2005, The New England journal of medicine.
[45] Allan R. Jones,et al. Genome-wide atlas of gene expression in the adult mouse brain , 2007, Nature.
[46] Shawn M. Gillespie,et al. Single-cell RNA-seq highlights intratumoral heterogeneity in primary glioblastoma , 2014, Science.
[47] J. McCarty,et al. Neuropilin-1 modulates TGFβ signaling to drive glioblastoma growth and recurrence after anti-angiogenic therapy , 2017, PloS one.
[48] K. Ligon,et al. Histology-Based Expression Profiling Yields Novel Prognostic Markers in Human Glioblastoma , 2005, Journal of neuropathology and experimental neurology.
[49] Alex A. Pollen,et al. Single‐cell sequencing maps gene expression to mutational phylogenies in PDGF‐ and EGF‐driven gliomas , 2016, Molecular Systems Biology.
[50] F. Lang,et al. The Cytoskeletal Adapter Protein Spinophilin Regulates Invadopodia Dynamics and Tumor Cell Invasion in Glioblastoma , 2016, Molecular Cancer Research.
[51] M. Halterman,et al. Expression Profiling of the MAP Kinase Phosphatase Family Reveals a Role for DUSP1 in the Glioblastoma Stem Cell Niche , 2017, Cancer Microenvironment.
[52] Jae-Geun Yoon,et al. High-Throughput Chemical Screens Identify Disulfiram as an Inhibitor of Human Glioblastoma Stem Cells , 2012, Oncotarget.
[53] Koji Kadota,et al. A normalization strategy for comparing tag count data , 2012, Algorithms for Molecular Biology.
[54] S. Quake,et al. A survey of human brain transcriptome diversity at the single cell level , 2015, Proceedings of the National Academy of Sciences.
[55] Patrick J. Paddison,et al. Ion channel expression patterns in glioblastoma stem cells with functional and therapeutic implications for malignancy , 2017, PloS one.
[56] Bradley E. Bernstein,et al. Transcription elongation factors represent in vivo cancer dependencies in glioblastoma , 2017, Nature.
[57] M. Wigler,et al. Circular binary segmentation for the analysis of array-based DNA copy number data. , 2004, Biostatistics.
[58] Ed S Lein,et al. Improving reliability and absolute quantification of human brain microarray data by filtering and scaling probes using RNA-Seq , 2014, BMC Genomics.
[59] In-Hee Lee,et al. Spatiotemporal genomic architecture informs precision oncology in glioblastoma , 2017, Nature Genetics.
[60] P. Ivanov,et al. The Long Non-coding RNA HIF1A-AS2 Facilitates the Maintenance of Mesenchymal Glioblastoma Stem-like Cells in Hypoxic Niches. , 2016, Cell reports.
[61] Putting "multiforme" back into glioblastoma: intratumoral transcriptome heterogeneity is a consequence of its complex morphology. , 2017, Neuro-oncology.
[62] Colin N. Dewey,et al. RNA-Seq gene expression estimation with read mapping uncertainty , 2009, Bioinform..
[63] G. G. Stokes. "J." , 1890, The New Yale Book of Quotations.
[64] R. McLendon,et al. Glioblastoma Stem Cells Generate Vascular Pericytes to Support Vessel Function and Tumor Growth , 2013, Cell.