Selective overproduction of the proteasome inhibitor salinosporamide A via precursor pathway regulation.

The chlorinated natural product salinosporamide A is a potent 20S proteasome inhibitor currently in clinical trials as an anticancer agent. To deepen our understanding of salinosporamide biosynthesis, we investigated the function of a LuxR-type pathway-specific regulatory gene, salR2, and observed a selective effect on the production of salinosporamide A over its less active aliphatic analogs. SalR2 specifically activates genes involved in the biosynthesis of the halogenated precursor chloroethylmalonyl-CoA, which is a dedicated precursor of salinosporamide A. Specifically, SalR2 activates transcription of two divergent operons-one of which contains the unique S-adenosyl-L-methionine-dependent chlorinase encoding gene salL. By applying this knowledge to rational engineering, we were able to selectively double salinosporamide A production. This study exemplifies the specialized regulation of a polyketide precursor pathway and its application to the selective overproduction of a specific natural product congener.

[1]  A. Marina,et al.  Phosphorylation-independent activation of the atypical response regulator NblR. , 2008, Microbiology.

[2]  S. Neuteboom,et al.  Structure-activity relationship studies of salinosporamide A (NPI-0052), a novel marine derived proteasome inhibitor. , 2005, Journal of medicinal chemistry.

[3]  F. Studier,et al.  Protein production by auto-induction in high density shaking cultures. , 2005, Protein expression and purification.

[4]  P. Richardson,et al.  Marizomib, a proteasome inhibitor for all seasons: preclinical profile and a framework for clinical trials. , 2011, Current cancer drug targets.

[5]  B. Moore,et al.  Salinosporamide natural products: Potent 20 S proteasome inhibitors as promising cancer chemotherapeutics. , 2010, Angewandte Chemie.

[6]  Ann M Stock,et al.  Bacterial response regulators: versatile regulatory strategies from common domains. , 2007, Trends in biochemical sciences.

[7]  J. Nodwell,et al.  Pivotal roles for the receiver domain in the mechanism of action of the response regulator RamR of Streptomyces coelicolor. , 2005, Journal of molecular biology.

[8]  Yuqing Tian,et al.  A pathway‐specific transcriptional regulatory gene for nikkomycin biosynthesis in Streptomyces ansochromogenes that also influences colony development , 2005, Molecular microbiology.

[9]  C. Richard Hutchinson,et al.  The Streptomyces peucetius dpsY anddnrX Genes Govern Early and Late Steps of Daunorubicin and Doxorubicin Biosynthesis , 1998, Journal of bacteriology.

[10]  B. Eikmanns,et al.  RamA, the Transcriptional Regulator of Acetate Metabolism in Corynebacterium glutamicum, Is Subject to Negative Autoregulation , 2006, Journal of Molecular Microbiology and Biotechnology.

[11]  R. Dixon,et al.  Dissection of malonyl-coenzyme A decarboxylation from polyketide formation in the reaction mechanism of a plant polyketide synthase. , 2000, Biochemistry.

[12]  K. Reynolds,et al.  Role of Crotonyl Coenzyme A Reductase in Determining the Ratio of Polyketides Monensin A and Monensin B Produced byStreptomyces cinnamonensis , 1999, Journal of bacteriology.

[13]  R. Huber,et al.  Crystal structures of Salinosporamide A (NPI-0052) and B (NPI-0047) in complex with the 20S proteasome reveal important consequences of beta-lactone ring opening and a mechanism for irreversible binding. , 2006, Journal of the American Chemical Society.

[14]  S. Kitani,et al.  Identification of the bkdAB gene cluster, a plausible source of the starter-unit for virginiamycin M production in Streptomyces virginiae , 2007, Archives of Microbiology.

[15]  M. Hutchings Unusual two-component signal transduction pathways in the actinobacteria. , 2007, Advances in applied microbiology.

[16]  潘海学,et al.  Production of doramectin by rational engineering of the avermectin biosynthetic pathway , 2011 .

[17]  R. Rao,et al.  Analysis of the integration function of the streptomycete bacteriophage phi C31. , 1991, Journal of molecular biology.

[18]  M. Bibb,et al.  The mRNA for the 23S rRNA methylase encoded by the ermE gene of Saccharopolyspora erythraea is translated in the absence of a conventional ribosome‐binding site , 1994, Molecular microbiology.

[19]  T. Kieser Practical streptomyces genetics , 2000 .

[20]  P. V. van Helden,et al.  Novel Method for Rapid Measurement of Growth of Mycobacteria in Detergent-Free Media , 1998, Journal of Clinical Microbiology.

[21]  Robert D. Finn,et al.  The Pfam protein families database , 2004, Nucleic Acids Res..

[22]  J. Sambrook,et al.  Molecular Cloning: A Laboratory Manual , 2001 .

[23]  L. Holm,et al.  The Pfam protein families database , 2005, Nucleic Acids Res..

[24]  B. Moore,et al.  Salinosporamide Natural Products: Potent 20S Proteasome Inhibitors as Promising Cancer Chemotherapeutics. , 2011 .

[25]  E. Greenberg,et al.  Quorum sensing in bacteria: the LuxR-LuxI family of cell density-responsive transcriptional regulators , 1994, Journal of bacteriology.

[26]  Anna Lechner,et al.  Biosynthesis of the salinosporamide A polyketide synthase substrate chloroethylmalonyl-coenzyme A from S-adenosyl-l-methionine , 2009, Proceedings of the National Academy of Sciences.

[27]  B. Burns,et al.  Optimized rapid amplification of cDNA ends (RACE) for mapping bacterial mRNA transcripts. , 2000, BioTechniques.

[28]  R. Biener,et al.  Comparative analysis of transcriptional activities of heterologous promoters in the rare actinomycete Actinoplanes friuliensis. , 2009, Journal of biotechnology.

[29]  K. Fan,et al.  Autoregulation of antibiotic biosynthesis by binding of the end product to an atypical response regulator , 2009, Proceedings of the National Academy of Sciences.

[30]  G. Challis,et al.  PCR-targeted Streptomyces gene replacement identifies a protein domain needed for biosynthesis of the sesquiterpene soil odor geosmin , 2003, Proceedings of the National Academy of Sciences of the United States of America.

[31]  E. Greenberg,et al.  Regulation of gene expression by cell-to-cell communication: acyl-homoserine lactone quorum sensing. , 2001, Annual review of genetics.

[32]  B. Moore,et al.  Discovery and characterization of a marine bacterial SAM-dependent chlorinase. , 2008, Nature chemical biology.

[33]  Micheal C. Wilson,et al.  The Discovery of Salinosporamide K from the Marine Bacterium “Salinispora pacifica” by Genome Mining Gives Insight into Pathway Evolution , 2011, Chembiochem : a European journal of chemical biology.

[34]  Margaret C. M. Smith,et al.  Control of directionality in the site‐specific recombination system of the Streptomyces phage φC31 , 2000, Molecular microbiology.

[35]  S. Maddocks,et al.  Structure and function of the LysR-type transcriptional regulator (LTTR) family proteins. , 2008, Microbiology.

[36]  F. Lombó,et al.  The Mithramycin Gene Cluster of Streptomyces argillaceus Contains a Positive Regulatory Gene and Two Repeated DNA Sequences That Are Located at Both Ends of the Cluster , 1999, Journal of bacteriology.

[37]  T. Baldwin,et al.  Identification of the operator of the lux regulon from the Vibrio fischeri strain ATCC7744. , 1989, Proceedings of the National Academy of Sciences of the United States of America.

[38]  P. Combes,et al.  The Streptomyces Genome Contains Multiple Pseudo-attB Sites for the φC31-Encoded Site-Specific Recombination System , 2002, Journal of bacteriology.

[39]  B. Moore,et al.  Biosynthesis of salinosporamides from alpha,beta-unsaturated fatty acids: implications for extending polyketide synthase diversity. , 2009, Journal of the American Chemical Society.

[40]  F. Huber,et al.  The formation of daptomycin by supplying decanoic acid to Streptomyces roseosporus cultures producing the antibiotic complex A21978C , 1988 .

[41]  M. Bibb,et al.  Cloning and analysis of the promoter region of the erythromycin resistance gene (ermE) of Streptomyces erythraeus. , 1985, Gene.

[42]  Anna Eliasson Lantz,et al.  Reducing the variability of antibiotic production in Streptomyces by cultivation in 24-square deepwell plates. , 2010, Journal of bioscience and bioengineering.

[43]  J. Martín,et al.  Engineering of regulatory cascades and networks controlling antibiotic biosynthesis in Streptomyces. , 2010, Current opinion in microbiology.

[44]  A. Sickmann,et al.  Phosphorylation-Independent Activity of Atypical Response Regulators of Helicobacter pylori , 2005, Journal of bacteriology.

[45]  S. Donadio,et al.  Cloning of genes governing the deoxysugar portion of the erythromycin biosynthesis pathway in Saccharopolyspora erythraea (Streptomyces erythreus) , 1989, Journal of bacteriology.

[46]  T. Merkel,et al.  Promoter elements required for positive control of transcription of the Escherichia coli uhpT gene , 1992, Journal of bacteriology.

[47]  E. Greenberg,et al.  A Mutational Analysis Defines Vibrio fischeri LuxR Binding Sites , 2007, Journal of bacteriology.

[48]  Linquan Bai,et al.  Enhanced production of ansamitocin P-3 by addition of isobutanol in fermentation of Actinosynnema pretiosum. , 2011, Bioresource technology.

[49]  N. Brown,et al.  The MerR family of transcriptional regulators. , 2003, FEMS microbiology reviews.

[50]  B. Moore,et al.  Biosynthetic convergence of salinosporamides A and B in the marine actinomycete Salinispora tropica. , 2007, Organic letters.

[51]  B. Moore,et al.  Characterization of 5-Chloro-5-Deoxy-d-Ribose 1-Dehydrogenase in Chloroethylmalonyl Coenzyme A Biosynthesis , 2010, The Journal of Biological Chemistry.

[52]  K. Chater,et al.  An Unusual Response Regulator Influences Sporulation at Early and Late Stages in Streptomyces coelicolor , 2007, Journal of bacteriology.

[53]  K. S. Lam,et al.  Discovery and development of the anticancer agent salinosporamide A (NPI-0052). , 2009, Bioorganic & medicinal chemistry.

[54]  P. Leadlay,et al.  The gene cluster for fluorometabolite biosynthesis in Streptomyces cattleya: a thioesterase confers resistance to fluoroacetyl-coenzyme A. , 2006, Chemistry & biology.

[55]  R. Müller,et al.  Mining the Cinnabaramide Biosynthetic Pathway to Generate Novel Proteasome Inhibitors , 2011, Chembiochem : a European journal of chemical biology.

[56]  K. O'Brien,et al.  Plasmid cloning vectors for the conjugal transfer of DNA from Escherichia coli to Streptomyces spp. , 1992, Gene.