A novel architecture to classify histopathology images using convolutional neural networks

Histopathology is the study of tissue structure under the microscope to determine if the cells are normal or abnormal. Histopathology is a very important exam that is used to determine the patients’ treatment plan. The classification of histopathology images is very difficult to even an experienced pathologist, and a second opinion is often needed. Convolutional neural network (CNN), a particular type of deep learning architecture, obtained outstanding results in computer vision tasks like image classification. In this paper, we propose a novel CNN architecture to classify histopathology images. The proposed model consists of 15 convolution layers and two fully connected layers. A comparison between different activation functions was performed to detect the most efficient one, taking into account two different optimizers. To train and evaluate the proposed model, the publicly available PatchCamelyon dataset was used. The dataset consists of 220,000 annotated images for training and 57,000 unannotated images for testing. The proposed model achieved higher performance compared to the state-of-the-art architectures with an AUC of 95.46%.

[1]  Yoon Kim,et al.  Convolutional Neural Networks for Sentence Classification , 2014, EMNLP.

[2]  Alejandro F. Frangi,et al.  Medical Image Computing and Computer Assisted Intervention – MICCAI 2018 , 2018, Lecture Notes in Computer Science.

[3]  Andrew Zisserman,et al.  Very Deep Convolutional Networks for Large-Scale Image Recognition , 2014, ICLR.

[4]  Sepp Hochreiter,et al.  Fast and Accurate Deep Network Learning by Exponential Linear Units (ELUs) , 2015, ICLR.

[5]  Sergey Ioffe,et al.  Rethinking the Inception Architecture for Computer Vision , 2015, 2016 IEEE Conference on Computer Vision and Pattern Recognition (CVPR).

[6]  Taghi M. Khoshgoftaar,et al.  A survey on Image Data Augmentation for Deep Learning , 2019, Journal of Big Data.

[7]  Juho Kannala,et al.  Deep learning for magnification independent breast cancer histopathology image classification , 2016, 2016 23rd International Conference on Pattern Recognition (ICPR).

[8]  Yann Dauphin,et al.  Convolutional Sequence to Sequence Learning , 2017, ICML.

[9]  Yann Dauphin,et al.  A Convolutional Encoder Model for Neural Machine Translation , 2016, ACL.

[10]  Snehasis Mukherjee,et al.  RCCNet: An Efficient Convolutional Neural Network for Histological Routine Colon Cancer Nuclei Classification , 2018, 2018 15th International Conference on Control, Automation, Robotics and Vision (ICARCV).

[11]  Andrew L. Maas Rectifier Nonlinearities Improve Neural Network Acoustic Models , 2013 .

[12]  L. Rodney Long,et al.  Histology image analysis for carcinoma detection and grading , 2012, Comput. Methods Programs Biomed..

[13]  Xiang Zhang,et al.  Character-level Convolutional Networks for Text Classification , 2015, NIPS.

[14]  Geoffrey E. Hinton,et al.  Rectified Linear Units Improve Restricted Boltzmann Machines , 2010, ICML.

[15]  Sebastian Ruder,et al.  An overview of gradient descent optimization algorithms , 2016, Vestnik komp'iuternykh i informatsionnykh tekhnologii.

[16]  Gerald Penn,et al.  Applying Convolutional Neural Networks concepts to hybrid NN-HMM model for speech recognition , 2012, 2012 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP).

[17]  Phu T. Nguyen,et al.  Multiclass Breast Cancer Classification Using Convolutional Neural Network , 2019, 2019 International Symposium on Electrical and Electronics Engineering (ISEE).

[18]  Nasir M. Rajpoot,et al.  Locality Sensitive Deep Learning for Detection and Classification of Nuclei in Routine Colon Cancer Histology Images , 2016, IEEE Trans. Medical Imaging.

[19]  Bin Fan,et al.  Traffic Sign Recognition Using a Multi-Task Convolutional Neural Network , 2018, IEEE Transactions on Intelligent Transportation Systems.

[20]  Andrew H. Beck,et al.  Diagnostic Assessment of Deep Learning Algorithms for Detection of Lymph Node Metastases in Women With Breast Cancer , 2017, JAMA.

[21]  Jason Y. Park,et al.  Trends in the US and Canadian Pathologist Workforces From 2007 to 2017 , 2019, JAMA network open.

[22]  Jian Sun,et al.  Deep Residual Learning for Image Recognition , 2015, 2016 IEEE Conference on Computer Vision and Pattern Recognition (CVPR).

[23]  Yann LeCun,et al.  Traffic sign recognition with multi-scale Convolutional Networks , 2011, The 2011 International Joint Conference on Neural Networks.

[24]  Huifang Deng,et al.  Medical Image Classification Based on Deep Features Extracted by Deep Model and Statistic Feature Fusion with Multilayer Perceptron‬ , 2018, Comput. Intell. Neurosci..

[25]  Martín Abadi,et al.  TensorFlow: Large-Scale Machine Learning on Heterogeneous Distributed Systems , 2016, ArXiv.

[26]  Geoffrey E. Hinton,et al.  ImageNet classification with deep convolutional neural networks , 2012, Commun. ACM.

[27]  Sepp Hochreiter,et al.  Self-Normalizing Neural Networks , 2017, NIPS.

[28]  Yoshua Bengio,et al.  Gradient-based learning applied to document recognition , 1998, Proc. IEEE.

[29]  Gerald Penn,et al.  Convolutional Neural Networks for Speech Recognition , 2014, IEEE/ACM Transactions on Audio, Speech, and Language Processing.

[30]  Jimmy Ba,et al.  Adam: A Method for Stochastic Optimization , 2014, ICLR.

[31]  Sergey Ioffe,et al.  Batch Normalization: Accelerating Deep Network Training by Reducing Internal Covariate Shift , 2015, ICML.

[32]  A. Tzallas,et al.  Deep Learning in Liver Biopsies using Convolutional Neural Networks , 2019, 2019 42nd International Conference on Telecommunications and Signal Processing (TSP).

[33]  Lawrence D. Jackel,et al.  Backpropagation Applied to Handwritten Zip Code Recognition , 1989, Neural Computation.

[34]  Michael S. Bernstein,et al.  ImageNet Large Scale Visual Recognition Challenge , 2014, International Journal of Computer Vision.

[35]  S. Pinder,et al.  Histological grading of breast carcinomas: a study of interobserver agreement. , 1995, Human pathology.

[36]  A. Jemal,et al.  Cancer statistics, 2020 , 2020, CA: a cancer journal for clinicians.