Genome-wide investigation of calcium-dependent protein kinase gene family in pineapple: evolution and expression profiles during development and stress

[1]  Maokai Yan,et al.  Genome-Wide Classification and Evolutionary and Functional Analyses of the VQ Family , 2019, Tropical Plant Biology.

[2]  Maokai Yan,et al.  Evolutionary and expression analyses of soybean basic Leucine zipper transcription factor family , 2018, BMC Genomics.

[3]  Xudong Sun,et al.  Genome-wide survey indicates diverse physiological roles of the barley (Hordeum vulgare L.) calcium-dependent protein kinase genes , 2017, Scientific Reports.

[4]  Heming Zhao,et al.  ERECTA signaling controls Arabidopsis inflorescence architecture through chromatin-mediated activation of PRE1 expression. , 2017, The New phytologist.

[5]  R. Ulloa,et al.  Analysis of the potato calcium-dependent protein kinase family and characterization of StCDPK7, a member induced upon infection with Phytophthora infestans , 2017, Plant Cell Reports.

[6]  Hao Li,et al.  Genome-wide identification and expression analysis of calcium‑dependent protein kinase and its related kinase gene families in melon (Cucumis melo L.) , 2017, PloS one.

[7]  J. Qiu,et al.  Abscisic acid negatively regulates post-penetration resistance of Arabidopsis to the biotrophic powdery mildew fungus , 2017, Science China Life Sciences.

[8]  Jie Zhou,et al.  Genome-Wide Identification and Expression Analysis of Calcium-dependent Protein Kinase in Tomato , 2016, Front. Plant Sci..

[9]  Xin-Zhong Cai,et al.  Calcium-dependent protein kinase (CDPK) and CDPK-related kinase (CRK) gene families in tomato: genome-wide identification and functional analyses in disease resistance , 2016, Molecular Genetics and Genomics.

[10]  Guiling Sun,et al.  Genome-wide identification of calcium-dependent protein kinases in soybean and analyses of their transcriptional responses to insect herbivory and drought stress , 2016, Scientific Reports.

[11]  David Sankoff,et al.  The pineapple genome and the evolution of CAM photosynthesis , 2015, Nature Genetics.

[12]  Yan Yan,et al.  Genome-wide identification and expression analysis of calcium-dependent protein kinase and its closely related kinase genes in Capsicum annuum , 2015, Front. Plant Sci..

[13]  Yi Zheng,et al.  Genome-wide Identification and Expression Analysis of the CDPK Gene Family in Grape, Vitis spp , 2015, BMC Plant Biology.

[14]  T. Romeis,et al.  ZmCPK1, a calcium-independent kinase member of the Zea mays CDPK gene family, functions as a negative regulator in cold stress signalling. , 2015, Plant, cell & environment.

[15]  Min Liu,et al.  Genome-wide analysis and expression of the calcium-dependent protein kinase gene family in cucumber , 2015, Molecular Genetics and Genomics.

[16]  Wei Li,et al.  Genome-Wide Survey and Expression Analysis of Calcium-Dependent Protein Kinase in Gossypium raimondii , 2014, PloS one.

[17]  S. Christensen,et al.  Two closely related members of Arabidopsis 13-lipoxygenases (13-LOXs), LOX3 and LOX4, reveal distinct functions in response to plant-parasitic nematode infection. , 2014, Molecular plant pathology.

[18]  O. A. Aleynova-Shumakova,et al.  VaCPK20 gene overexpression significantly increased resveratrol content and expression of stilbene synthase genes in cell cultures of Vitis amurensis Rupr , 2014, Applied Microbiology and Biotechnology.

[19]  A. Séguin,et al.  Ancient signals: comparative genomics of green plant CDPKs. , 2014, Trends in plant science.

[20]  M. Pezzotti,et al.  The Evolutionary History and Diverse Physiological Roles of the Grapevine Calcium-Dependent Protein Kinase Gene Family , 2013, PloS one.

[21]  De-quan Li,et al.  A maize calcium-dependent protein kinase gene, ZmCPK4, positively regulated abscisic acid signaling and enhanced drought stress tolerance in transgenic Arabidopsis. , 2013, Plant physiology and biochemistry : PPB.

[22]  De-quan Li,et al.  Genome-wide identification and expression analysis of calcium-dependent protein kinase in maize , 2013, BMC Genomics.

[23]  Paul Brown,et al.  MEME-LaB: motif analysis in clusters , 2013, Bioinform..

[24]  Y. Kong,et al.  Genome-wide identification, classification, and expression analysis of CDPK and its closely related gene families in poplar (Populus trichocarpa) , 2013, Molecular Biology Reports.

[25]  Xiangdong Yang,et al.  Genome-Wide Identification of the Maize Calcium-Dependent Protein Kinase Gene Family , 2013, Applied Biochemistry and Biotechnology.

[26]  Z. Fei,et al.  Genome-Wide Identification and Analysis of Grape Aldehyde Dehydrogenase (ALDH) Gene Superfamily , 2012, PloS one.

[27]  A. Wernimont,et al.  Structures of parasitic CDPK domains point to a common mechanism of activation , 2011, Proteins.

[28]  G. Arimura,et al.  Arabidopsis CPK3 plays extensive roles in various biological and environmental responses , 2010, Plant signaling & behavior.

[29]  Shoshi Kikuchi,et al.  Genome-wide analysis of NAC transcription factor family in rice. , 2010, Gene.

[30]  Kwang-Yeol Yang,et al.  Mitogen-activated protein kinase 3 and 6 regulate Botrytis cinerea-induced ethylene production in Arabidopsis. , 2010, The Plant journal : for cell and molecular biology.

[31]  B. San Segundo,et al.  AtCPK1 calcium-dependent protein kinase mediates pathogen resistance in Arabidopsis. , 2010, The Plant journal : for cell and molecular biology.

[32]  Haibao Tang,et al.  Angiosperm genome comparisons reveal early polyploidy in the monocot lineage , 2009, Proceedings of the National Academy of Sciences.

[33]  L. Mao,et al.  Evolutionary and functional study of the CDPK gene family in wheat (Triticum aestivum L.) , 2008, Plant Molecular Biology.

[34]  Da-Peng Zhang,et al.  Two Calcium-Dependent Protein Kinases, CPK4 and CPK11, Regulate Abscisic Acid Signal Transduction in Arabidopsis[W] , 2007, The Plant Cell Online.

[35]  S. Kapoor,et al.  Expression analysis of calcium-dependent protein kinase gene family during reproductive development and abiotic stress conditions in rice (Oryza sativa L. ssp. indica) , 2007, Molecular Genetics and Genomics.

[36]  Hao-jen Huang,et al.  PaCDPK1, a gene encoding calcium-dependent protein kinase from orchid, Phalaenopsis amabilis, is induced by cold, wounding, and pathogen challenge , 2007, Plant Cell Reports.

[37]  Yongjun Lin,et al.  Expression of rice Ca2+‐dependent protein kinases (CDPKs) genes under different environmental stresses , 2007, FEBS letters.

[38]  Peer Bork,et al.  PAL2NAL: robust conversion of protein sequence alignments into the corresponding codon alignments , 2006, Nucleic Acids Res..

[39]  S. Ivashuta,et al.  RNA Interference Identifies a Calcium-Dependent Protein Kinase Involved in Medicago truncatula Root Developmentw⃞ , 2005, The Plant Cell Online.

[40]  P. K. Hepler,et al.  Calcium: A Central Regulator of Plant Growth and Development , 2005, The Plant Cell Online.

[41]  Nicolas Bouché,et al.  Plant-specific calmodulin-binding proteins. , 2005, Annual review of plant biology.

[42]  W. Chazin,et al.  Evidence for Differing Roles for Each Lobe of the Calmodulin-like Domain in a Calcium-dependent Protein Kinase* , 2004, Journal of Biological Chemistry.

[43]  B. Pickard,et al.  Subcellular Targeting of Nine Calcium-Dependent Protein Kinase Isoforms from Arabidopsis1 , 2003, Plant Physiology.

[44]  Ron D. Appel,et al.  ExPASy: the proteomics server for in-depth protein knowledge and analysis , 2003, Nucleic Acids Res..

[45]  M. Gribskov,et al.  The Arabidopsis CDPK-SnRK Superfamily of Protein Kinases , 2003, Plant Physiology.

[46]  H. Cho,et al.  Interaction of NtCDPK1 calcium-dependent protein kinase with NtRpn3 regulatory subunit of the 26S proteasome in Nicotiana tabacum. , 2003, The Plant journal : for cell and molecular biology.

[47]  J. Sheen,et al.  Calcium Signaling through Protein Kinases. The Arabidopsis Calcium-Dependent Protein Kinase Gene Family1 , 2002, Plant Physiology.

[48]  Xiaorong S. Zhang,et al.  Molecular Evolution of Calmodulin-Like Domain Protein Kinases (CDPKs) in Plants and Protists , 2001, Journal of Molecular Evolution.

[49]  D. G. Brown,et al.  The origins of genomic duplications in Arabidopsis. , 2000, Science.

[50]  M. Berridge,et al.  The versatility and universality of calcium signalling , 2000, Nature Reviews Molecular Cell Biology.

[51]  Y. Saijo,et al.  Over-expression of a single Ca2+-dependent protein kinase confers both cold and salt/drought tolerance on rice plants. , 2000, The Plant journal : for cell and molecular biology.

[52]  B. Thomma,et al.  Concomitant Activation of Jasmonate and Ethylene Response Pathways Is Required for Induction of a Plant Defensin Gene in Arabidopsis , 1998, Plant Cell.

[53]  R. Zielinski CALMODULIN AND CALMODULIN-BINDING PROTEINS IN PLANTS. , 1998, Annual review of plant physiology and plant molecular biology.

[54]  J. Thompson,et al.  CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. , 1994, Nucleic acids research.

[55]  L. Crossland,et al.  Cloning and characterization of a maize pollen-specific calcium-dependent calmodulin-independent protein kinase. , 1994, Proceedings of the National Academy of Sciences of the United States of America.

[56]  K. Shinozaki,et al.  Two genes that encode Ca2+-dependent protein kinases are induced by drought and high-salt stresses in Arabidopsis thaliana , 1994, Molecular and General Genetics MGG.

[57]  Yuan Qin,et al.  Epigenetic regulation of anthocyanin biosynthesis by an antagonistic interaction between H2A.Z and H3K4me3. , 2018, The New phytologist.

[58]  Yidong Liu,et al.  Mitogen-activated protein kinases and calcium-dependent protein kinases are involved in wounding-induced ethylene biosynthesis in Arabidopsis thaliana. , 2018, Plant, cell & environment.

[59]  S. Komatsu,et al.  A rice calcium-dependent protein kinase OsCPK12 oppositely modulates salt-stress tolerance and blast disease resistance. , 2012, The Plant journal : for cell and molecular biology.

[60]  T. Romeis,et al.  Calcium-dependent protein kinase CPK21 functions in abiotic stress response in Arabidopsis thaliana. , 2011, Molecular plant.

[61]  Da-Peng Zhang,et al.  Membrane-associated protein kinase activities in the developing mesocarp of grape berry. , 2004, Journal of plant physiology.

[62]  R. Solano,et al.  Constitutive expression of ETHYLENE-RESPONSE-FACTOR1 in Arabidopsis confers resistance to several necrotrophic fungi. , 2002, The Plant journal : for cell and molecular biology.

[63]  G. Pelletier,et al.  In planta Agrobacterium-mediated transformation of adult Arabidopsis thaliana plants by vacuum infiltration. , 1998, Methods in molecular biology.