Recruitment of the TolA Protein to Cell Constriction Sites in Escherichia coli via Three Separate Mechanisms, and a Critical Role for FtsWI Activity in Recruitment of both TolA and TolQ

Cell division (cytokinesis) is a fundamental biological process that is incompletely understood for any organism. Division of bacterial cells relies on ring-like machinery called the septal ring or divisome that assembles along the circumference of the mother cell at the site where constriction will eventually occur. ABSTRACT The Tol-Pal system of Gram-negative bacteria helps maintain the integrity of the cell envelope and ensures that invagination of the envelope layers during cell fission occurs in a well-coordinated manner. In Escherichia coli, the five Tol-Pal proteins (TolQ, -R, -A, and -B and Pal) accumulate at cell constriction sites in a manner that normally requires the activity of the cell constriction initiation protein FtsN. While septal recruitment of TolR, TolB, and Pal also requires the presence of TolQ and/or TolA, the latter two can recognize constriction sites independently of the other system proteins. What attracts TolQ or TolA to these sites is unclear. We show that FtsN indirectly attracts both proteins and that PBP1A, PBP1B, and CpoB are dispensable for their septal recruitment. However, the β-lactam aztreonam readily interferes with the septal accumulation of both TolQ and TolA, indicating that FtsN-stimulated production of septal peptidoglycan by the FtsWI synthase is critical to their recruitment. We also discovered that each of TolA's three domains can separately recognize division sites. Notably, the middle domain (TolAII) is responsible for directing TolA to constriction sites in the absence of other Tol-Pal proteins and CpoB, while recruitment of TolAI requires TolQ and that of TolAIII requires a combination of TolB, Pal, and CpoB. Additionally, we describe the construction and use of functional fluorescent sandwich fusions of the ZipA division protein, which should be more broadly valuable in future studies of the E. coli cell division machinery. IMPORTANCE Cell division (cytokinesis) is a fundamental biological process that is incompletely understood for any organism. Division of bacterial cells relies on a ring-like machinery called the septal ring or divisome that assembles along the circumference of the mother cell at the site where constriction will eventually occur. In the well-studied bacterium Escherichia coli, this machinery contains over 30 distinct proteins. We studied how two such proteins, TolA and TolQ, which also play a role in maintaining the integrity of the outer membrane, are recruited to the machinery. We find that TolA can be recruited by three separate mechanisms and that both proteins rely on the activity of a well-studied cell division enzyme for their recruitment.

[1]  Anna G. Green,et al.  Large-scale discovery of protein interactions at residue resolution using co-evolution calculated from genomic sequences , 2021, Nature Communications.

[2]  E. Breukink,et al.  The bacterial cell division protein fragment EFtsN binds to and activates the major peptidoglycan synthase PBP1b. , 2020, The Journal of biological chemistry.

[3]  P. D. de Boer,et al.  A two-track model for the spatiotemporal coordination of bacterial septal cell wall synthesis revealed by single-molecule imaging of FtsW , 2020, Nature Microbiology.

[4]  Shishen Du,et al.  Essential Role for FtsL in Activation of Septal Peptidoglycan Synthesis , 2020, mBio.

[5]  T. Bernhardt,et al.  A conserved subcomplex within the bacterial cytokinetic ring activates cell wall synthesis by the FtsW-FtsI synthase , 2020, Proceedings of the National Academy of Sciences.

[6]  C. Kleanthous,et al.  The multifarious roles of Tol-Pal in Gram-negative bacteria , 2020, FEMS microbiology reviews.

[7]  Anastasiya A. Yakhnina,et al.  The Tol-Pal system is required for peptidoglycan-cleaving enzymes to complete bacterial cell division , 2020, Proceedings of the National Academy of Sciences.

[8]  W. Margolin,et al.  Peptide Linkers within the Essential FtsZ Membrane Tethers ZipA and FtsA Are Nonessential for Cell Division , 2019, Journal of bacteriology.

[9]  S. Buchanan,et al.  Author Correction: Cryo-EM structure of the bacterial Ton motor subcomplex ExbB–ExbD provides information on structure and stoichiometry , 2019, Communications Biology.

[10]  Seán M. Murray,et al.  The lipoprotein Pal stabilises the bacterial outer membrane during constriction by a mobilisation-and-capture mechanism , 2020, Nature Communications.

[11]  Shishen Du,et al.  At the Heart of Bacterial Cytokinesis: The Z Ring. , 2019, Trends in microbiology.

[12]  R. Lloubès,et al.  Tol Energy-Driven Localization of Pal and Anchoring to the Peptidoglycan Promote Outer-Membrane Constriction. , 2019, Journal of molecular biology.

[13]  P. D. de Boer,et al.  Roles of the DedD Protein in Escherichia coli Cell Constriction , 2019, Journal of bacteriology.

[14]  E. Breukink,et al.  Regulation of the Peptidoglycan Polymerase Activity of PBP1b by Antagonist Actions of the Core Divisome Proteins FtsBLQ and FtsN , 2019, mBio.

[15]  A. Kruse,et al.  FtsW is a peptidoglycan polymerase that is functional only in complex with its cognate penicillin-binding protein , 2018, Nature Microbiology.

[16]  W. Margolin,et al.  Direct Interaction between the Two Z Ring Membrane Anchors FtsA and ZipA , 2018, Journal of bacteriology.

[17]  E. Breukink,et al.  Z-ring membrane anchors associate with cell wall synthases to initiate bacterial cell division , 2018, Nature Communications.

[18]  C. Bougault,et al.  Induced conformational changes activate the peptidoglycan synthase PBP1B , 2018, Molecular microbiology.

[19]  Melina B. Cian,et al.  Salmonella Tol-Pal Reduces Outer Membrane Glycerophospholipid Levels for Envelope Homeostasis and Survival during Bacteremia , 2018, Infection and Immunity.

[20]  Alexander J F Egan Bacterial outer membrane constriction , 2018, Molecular microbiology.

[21]  M. Tsang,et al.  Supporting material for : NlpD links cell wall remodeling and outer membrane invagination during cytokinesis in Escherichia coli , 2017 .

[22]  Haichun Gao,et al.  Thioesterase YbgC affects motility by modulating c-di-GMP levels in Shewanella oneidensis , 2017, Scientific Reports.

[23]  R. Shrivastava,et al.  Outer membrane lipid homeostasis via retrograde phospholipid transport in Escherichia coli , 2017, bioRxiv.

[24]  K. C. Huang,et al.  GTPase activity–coupled treadmilling of the bacterial tubulin FtsZ organizes septal cell wall synthesis , 2016, Science.

[25]  H. Erickson,et al.  Probing for Binding Regions of the FtsZ Protein Surface through Site-Directed Insertions: Discovery of Fully Functional FtsZ-Fluorescent Proteins , 2016, Journal of bacteriology.

[26]  L. Aravind,et al.  The mechanism of force transmission at bacterial focal adhesion complexes , 2016, Nature.

[27]  C. Dekker,et al.  Treadmilling by FtsZ filaments drives peptidoglycan synthesis and bacterial cell division , 2016, Science.

[28]  J. Marto,et al.  Bacterial cell wall biogenesis is mediated by SEDS and PBP polymerase families functioning semi-autonomously , 2016, Nature Microbiology.

[29]  Shishen Du,et al.  FtsEX acts on FtsA to regulate divisome assembly and activity , 2016, Proceedings of the National Academy of Sciences.

[30]  G. von Heijne,et al.  Coordinated disassembly of the divisome complex in Escherichia coli , 2016, Molecular microbiology.

[31]  S. Kojima,et al.  Quantitative measurement of the outer membrane permeability in Escherichia coli lpp and tol–pal mutants defines the significance of Tol–Pal function for maintaining drug resistance , 2016, The Journal of Antibiotics.

[32]  Ellen M. Quardokus,et al.  MicrobeJ, a tool for high throughput bacterial cell detection and quantitative analysis , 2016, Nature Microbiology.

[33]  E. Breukink,et al.  Activities and regulation of peptidoglycan synthases , 2015, Philosophical Transactions of the Royal Society B: Biological Sciences.

[34]  David E. Kim,et al.  Large-scale determination of previously unsolved protein structures using evolutionary information , 2015, eLife.

[35]  C. Gross,et al.  Coordination of peptidoglycan synthesis and outer membrane constriction during Escherichia coli cell division , 2015, eLife.

[36]  Erin E. Carlson,et al.  Profiling of β-Lactam Selectivity for Penicillin-Binding Proteins in Escherichia coli Strain DC2 , 2015, Antimicrobial Agents and Chemotherapy.

[37]  Bing Liu,et al.  Roles for both FtsA and the FtsBLQ subcomplex in FtsN‐stimulated cell constriction in Escherichia coli , 2015, Molecular microbiology.

[38]  Gilbert GREUB,et al.  The role of peptidoglycan in chlamydial cell division: towards resolving the chlamydial anomaly. , 2015, FEMS microbiology reviews.

[39]  M. Tsang,et al.  A role for the FtsQLB complex in cytokinetic ring activation revealed by an ftsL allele that accelerates division , 2015, Molecular microbiology.

[40]  Jeremy H. Lakey,et al.  Antibacterial toxin colicin N and phage protein G3p compete with TolB for a binding site on TolA , 2015, Microbiology.

[41]  F. Superti,et al.  The Periplasmic Protein TolB as a Potential Drug Target in Pseudomonas aeruginosa , 2014, PloS one.

[42]  D. Weibel,et al.  Polar localization of Escherichia coli chemoreceptors requires an intact Tol–Pal complex , 2014, Molecular microbiology.

[43]  David H Burkhardt,et al.  Quantifying Absolute Protein Synthesis Rates Reveals Principles Underlying Allocation of Cellular Resources , 2014, Cell.

[44]  M. Hensel,et al.  SiiA and SiiB are novel type I secretion system subunits controlling SPI4‐mediated adhesion of Salmonella enterica , 2014, Cellular microbiology.

[45]  Adam C. Miller,et al.  Overexpression of the Escherichia coli TolQ protein leads to a null-FtsN-like division phenotype , 2013, MicrobiologyOpen.

[46]  M. Waldor,et al.  Crystal Structures of a CTXφ pIII Domain Unbound and in Complex with a Vibrio cholerae TolA Domain Reveal Novel Interaction Interfaces* , 2012, The Journal of Biological Chemistry.

[47]  Johannes E. Schindelin,et al.  Fiji: an open-source platform for biological-image analysis , 2012, Nature Methods.

[48]  Beiyan Nan,et al.  Uncovering the mystery of gliding motility in the myxobacteria. , 2011, Annual review of genetics.

[49]  R. Lloubès,et al.  Mapping the Interactions between Escherichia coli TolQ Transmembrane Segments* , 2011, The Journal of Biological Chemistry.

[50]  N. Krogan,et al.  Phenotypic Landscape of a Bacterial Cell , 2011, Cell.

[51]  Waldemar Vollmer,et al.  Regulation of peptidoglycan synthesis by outer membrane proteins , 2010, Cell.

[52]  Colin Kleanthous,et al.  Swimming against the tide: progress and challenges in our understanding of colicin translocation , 2010, Nature Reviews Microbiology.

[53]  C. Kleanthous,et al.  TolA modulates the oligomeric status of YbgF in the bacterial periplasm. , 2010, Journal of molecular biology.

[54]  H. McAdams,et al.  The Caulobacter Tol-Pal Complex Is Essential for Outer Membrane Integrity and the Positioning of a Polar Localization Factor , 2010, Journal of bacteriology.

[55]  G. Moore,et al.  Allosteric β‐propeller signalling in TolB and its manipulation by translocating colicins , 2009, The EMBO journal.

[56]  E. K. Jagusztyn-Krynicka,et al.  Peptidoglycan-associated lipoprotein (Pal) of Gram-negative bacteria: function, structure, role in pathogenesis and potential application in immunoprophylaxis. , 2009, FEMS microbiology letters.

[57]  P. D. de Boer,et al.  Self-Enhanced Accumulation of FtsN at Division Sites and Roles for Other Proteins with a SPOR Domain (DamX, DedD, and RlpA) in Escherichia coli Cell Constriction , 2009, Journal of bacteriology.

[58]  M. Gavioli,et al.  Mapping the Interactions between Escherichia coli Tol Subunits , 2009, Journal of Biological Chemistry.

[59]  P. D. de Boer,et al.  RodZ (YfgA) is required for proper assembly of the MreB actin cytoskeleton and cell shape in E. coli , 2009, The EMBO journal.

[60]  L. Cendron,et al.  Structural and enzymatic characterization of HP0496, a YbgC thioesterase from Helicobacter pylori , 2008, Proteins.

[61]  E. Breukink,et al.  The Essential Cell Division Protein FtsN Interacts with the Murein (Peptidoglycan) Synthase PBP1B in Escherichia coli* , 2007, Journal of Biological Chemistry.

[62]  F. Quiocho,et al.  Crystal structure of a catalytic intermediate of the maltose transporter , 2007, Nature.

[63]  P. D. de Boer,et al.  Conditional Lethality, Division Defects, Membrane Involution, and Endocytosis in mre and mrd Shape Mutants of Escherichia coli , 2007, Journal of bacteriology.

[64]  E. Cascales,et al.  Movements of the TolR C-terminal Domain Depend on TolQR Ionizable Key Residues and Regulate Activity of the Tol Complex* , 2007, Journal of Biological Chemistry.

[65]  W. Margolin,et al.  An altered FtsA can compensate for the loss of essential cell division protein FtsN in Escherichia coli , 2007, Molecular microbiology.

[66]  Colin Kleanthous,et al.  Molecular mimicry enables competitive recruitment by a natively disordered protein. , 2007, Journal of the American Chemical Society.

[67]  E. Cascales,et al.  Mutational analyses define helix organization and key residues of a bacterial membrane energy-transducing complex. , 2007, Journal of molecular biology.

[68]  Colin Kleanthous,et al.  Colicin Biology , 2007, Microbiology and Molecular Biology Reviews.

[69]  P. D. de Boer,et al.  The trans‐envelope Tol–Pal complex is part of the cell division machinery and required for proper outer‐membrane invagination during cell constriction in E. coli , 2007, Molecular microbiology.

[70]  Waldemar Vollmer,et al.  Interaction between two murein (peptidoglycan) synthases, PBP3 and PBP1B, in Escherichia coli , 2006, Molecular microbiology.

[71]  H. Mori,et al.  Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection , 2006, Molecular systems biology.

[72]  Amy E. Keating,et al.  Paircoil2: improved prediction of coiled coils from sequence , 2006, Bioinform..

[73]  John Orban,et al.  Peptidoglycan recognition by Pal, an outer membrane lipoprotein. , 2006, Biochemistry.

[74]  J. Dubuisson,et al.  Tol-Pal proteins are critical cell envelope components of Erwinia chrysanthemi affecting cell morphology and virulence. , 2005, Microbiology.

[75]  C. Deprez,et al.  Solution structure of the E.coli TolA C-terminal domain reveals conformational changes upon binding to the phage g3p N-terminal domain. , 2005, Journal of molecular biology.

[76]  Nancy A. Jenkins,et al.  Simple and highly efficient BAC recombineering using galK selection , 2005, Nucleic acids research.

[77]  E. Cascales,et al.  Deletion analyses of the peptidoglycan‐associated lipoprotein Pal reveals three independent binding sequences including a TolA box , 2003, Molecular microbiology.

[78]  Julio Collado-Vides,et al.  Sigma70 promoters in Escherichia coli: specific transcription in dense regions of overlapping promoter-like signals. , 2003, Journal of molecular biology.

[79]  P. D. de Boer,et al.  The Escherichia coli amidase AmiC is a periplasmic septal ring component exported via the twin‐arginine transport pathway , 2003, Molecular microbiology.

[80]  W. Margolin,et al.  A gain-of-function mutation in ftsA bypasses the requirement for the essential cell division gene zipA in Escherichia coli , 2003, Proceedings of the National Academy of Sciences of the United States of America.

[81]  Kenji Mizuguchi,et al.  Structure of the periplasmic domain of Pseudomonas aeruginosa TolA: evidence for an evolutionary relationship with the TonB transporter protein , 2002, The EMBO journal.

[82]  P. D. de Boer,et al.  Structural Evidence that the P/Q Domain of ZipA Is an Unstructured, Flexible Tether between the Membrane and the C-Terminal FtsZ-Binding Domain , 2002, Journal of bacteriology.

[83]  P. D. de Boer,et al.  Targeting of DMinC/MinD and DMinC/DicB Complexes to Septal Rings in Escherichia coli Suggests a Multistep Mechanism for MinC-Mediated Destruction of Nascent FtsZ Rings , 2002, Journal of bacteriology.

[84]  A. Walburger,et al.  The Tol/Pal system function requires an interaction between the C‐terminal domain of TolA and the N‐terminal domain of TolB , 2002, Molecular microbiology.

[85]  P. D. de Boer,et al.  ZipA Is Required for Recruitment of FtsK, FtsQ, FtsL, and FtsN to the Septal Ring in Escherichia coli , 2002, Journal of bacteriology.

[86]  J. Lutkenhaus,et al.  Unique and overlapping roles for ZipA and FtsA in septal ring assembly in Escherichia coli , 2002, The EMBO journal.

[87]  J. Sturgis,et al.  The TolQ–TolR proteins energize TolA and share homologies with the flagellar motor proteins 
MotA–MotB , 2001, Molecular microbiology.

[88]  J. Lazzaroni,et al.  Energy-Dependent Conformational Change in the TolA Protein ofEscherichia coli Involves Its N-Terminal Domain, TolQ, and TolR , 2001, Journal of bacteriology.

[89]  Yan Zhang,et al.  The bacterial cell‐division protein ZipA and its interaction with an FtsZ fragment revealed by X‐ray crystallography , 2001, The EMBO journal.

[90]  M. Gavioli,et al.  Proton motive force drives the interaction of the inner membrane TolA and outer membrane Pal proteins in Escherichia coli , 2000, Molecular microbiology.

[91]  P. D. de Boer,et al.  ZipA-Induced Bundling of FtsZ Polymers Mediated by an Interaction between C-Terminal Domains , 2000, Journal of bacteriology.

[92]  J. Ramos,et al.  Mutations in Each of the tol Genes ofPseudomonas putida Reveal that They Are Critical for Maintenance of Outer Membrane Stability , 2000, Journal of bacteriology.

[93]  M. Waldor,et al.  CTXφ Infection of Vibrio cholerae Requires the tolQRA Gene Products , 2000, Journal of bacteriology.

[94]  E. Bouveret,et al.  In Vitro Characterization of Peptidoglycan-Associated Lipoprotein (PAL)–Peptidoglycan and PAL–TolB Interactions , 1999, Journal of bacteriology.

[95]  L. Journet,et al.  Interaction with Tola and Tolq C-terminal Domains in Dimerization and Role of Tolr N-terminal, Central, And , 1999 .

[96]  A Wlodawer,et al.  Filamentous phage infection: crystal structure of g3p in complex with its coreceptor, the C-terminal domain of TolA. , 1999, Structure.

[97]  P. D. de Boer,et al.  Recruitment of ZipA to the Septal Ring ofEscherichia coli Is Dependent on FtsZ and Independent of FtsA , 1999, Journal of bacteriology.

[98]  J. Lazzaroni,et al.  Mutational Analysis of the Escherichia coli K-12 TolA N-Terminal Region and Characterization of Its TolQ-Interacting Domain by Genetic Suppression , 1998, Journal of bacteriology.

[99]  Ed Zintel,et al.  Resources , 1998, IT Prof..

[100]  R. Lloubès,et al.  Escherichia coli tol-pal Mutants Form Outer Membrane Vesicles , 1998, Journal of bacteriology.

[101]  C. Hale,et al.  Direct Binding of FtsZ to ZipA, an Essential Component of the Septal Ring Structure That Mediates Cell Division in E. coli , 1997, Cell.

[102]  R. E. Webster,et al.  Characterization of the tol-pal region of Escherichia coli K-12: translational control of tolR expression by TolQ and identification of a new open reading frame downstream of pal encoding a periplasmic protein , 1996, Journal of bacteriology.

[103]  E. Bouveret,et al.  Peptidoglycan-associated lipoprotein-TolB interaction. A possible key to explaining the formation of contact sites between the inner and outer membranes of Escherichia coli , 1995, The Journal of Biological Chemistry.

[104]  J. Lazzaroni,et al.  Protein complex within Escherichia coli inner membrane. TolA N-terminal domain interacts with TolQ and TolR proteins , 1995, The Journal of Biological Chemistry.

[105]  R. E. Webster,et al.  TolA: a membrane protein involved in colicin uptake contains an extended helical region. , 1991, Proceedings of the National Academy of Sciences of the United States of America.

[106]  L. Rothfield,et al.  A division inhibitor and a topological specificity factor coded for by the minicell locus determine proper placement of the division septum in E. coli , 1989, Cell.

[107]  R. E. Webster,et al.  Nucleotide sequence of a gene cluster involved in entry of E colicins and single-stranded DNA of infecting filamentous bacteriophages into Escherichia coli , 1987, Journal of bacteriology.

[108]  B. Spratt,et al.  Lysis of Escherichia coli by beta-lactam antibiotics: deletion analysis of the role of penicillin-binding proteins 1A and 1B. , 1985, Journal of general microbiology.

[109]  K. Bush,et al.  Azthreonam (SQ 26,776), a synthetic monobactam specifically active against aerobic gram-negative bacteria , 1982, Antimicrobial Agents and Chemotherapy.

[110]  Y. Hirota,et al.  On the process of cellular division in Escherichia coli: a series of mutants of E. coli altered in the penicillin-binding proteins. , 1978, Proceedings of the National Academy of Sciences of the United States of America.

[111]  Shishen Du,et al.  E. coli Cell Cycle Machinery. , 2017, Sub-cellular biochemistry.

[112]  P. D. de Boer,et al.  Advances in understanding E. coli cell fission. , 2010, Current opinion in microbiology.

[113]  L. Rodgers,et al.  Lab Ref: A Handbook of Recipes, Reagents, and Other Reference Tools for Use at the Bench , 2006 .

[114]  E. Bouveret,et al.  A protein network for phospholipid synthesis uncovered by a variant of the tandem affinity purification method in Escherichia coli , 2006, Proteomics.

[115]  J. Sturgis,et al.  Organisation and evolution of the tol-pal gene cluster. , 2001, Journal of molecular microbiology and biotechnology.

[116]  S. Carr,et al.  The structure of TolB, an essential component of the tol-dependent translocation system, and its protein-protein interaction with the translocation domain of colicin E9. , 2000, Structure.

[117]  S. Sasso,et al.  Circular dichroism and molecular modeling of the E. coli TolA periplasmic domains. , 1999, Biospectroscopy.

[118]  G. Devilliers,et al.  Impairment of cell division in tolA mutants of Escherichia coli at low and high medium osmolarities. , 1999, Biology of the cell.

[119]  Norbert O. E. Vischer,et al.  Object-image: an interactive image analysis program using structured point collection , 1994 .