Changes in hydrogen production and polymer accumulation upon sulfur-deprivation in purple photosynthetic bacteria

Abstract The work investigated physiological conditions directing cellular metabolism toward either H2-production or storage polymer accumulation in purple photosynthetic bacteria. Hydrogen-producing cultures of the purple anoxygenic photosynthetic bacterium Rhodospirillum rubrum were resuspended in media lacking sulfur (S) nutrients. S-deprived cultures displayed lack of growth, cessation of bacteriochlorophyll and protein accumulation, and inhibition of H2 evolution. Cell volume increased substantially and large amounts of polymer were found to accumulate extracellularly. Poly-β-hydroxybutyrate (PHB) content increased about 3.5-fold within 24 h of S-deprivation. Most cells remained viable after 100 h of S-deprivation and cultures were capable of resuming growth and H2-production when supplemented with sulfate. Transcript levels, protein amount, and activity of the nitrogenase enzyme, which are responsible for H2-production, decreased with a halftime of about 15 h upon S-deprivation. In addition, the nitrogenase NifH subunits were modified by ADP-ribosylation, indicating post-translational inactivation. Comparative aconitase activity measurements of control and S-deprived cells failed to indicate a general stress to Fe–S proteins, as aconitase, a Fe–S protein in the citric acid cycle sensitive to oxidative stress, maintained activity throughout the course of the S-deprivation. In contrast to nifH transcriptional down-regulation, expression of cysK (encoding cysteine synthase) was upregulated in response to S-deprivation. The described physiology is not specific to R. rubrum, as Rhodobacter sphaeroides and Rhodopseudomonas palustris exhibited a similar response to S-deprivation. It is suggested that manipulation of the supply of S-nutrients may serve as a tool for the alternative production of H2 or PHB in purple photosynthetic bacteria, thus affording opportunities to design photobiological systems that serve in both energy conversion and storage processes.

[1]  Tewes Tralau,et al.  Transcriptomic Analysis of the Sulfate Starvation Response of Pseudomonas aeruginosa , 2007, Journal of bacteriology.

[2]  Heguang Zhu,et al.  Hydrogen production from tofu wastewater by Rhodobacter sphaeroides immobilized in agar gels , 1999 .

[3]  M. Conrad,et al.  Effect of AmtB homologues on the post-translational regulation of nitrogenase activity in response to ammonium and energy signals in Rhodospirillum rubrum. , 2006, Microbiology.

[4]  J. Stubbe,et al.  Polyhydroxyalkanoate (PHA) homeostasis: the role of the PHA synthase , 2003 .

[5]  Simone Reinhardt,et al.  The “Intracellular” Poly(3-Hydroxybutyrate) (PHB) Depolymerase of Rhodospirillum rubrum Is a Periplasm-Located Protein with Specificity for Native PHB and with Structural Similarity to Extracellular PHB Depolymerases , 2004, Journal of bacteriology.

[6]  A. Melis,et al.  Hydrogen production. Green algae as a source of energy. , 2001, Plant physiology.

[7]  N. M. Kredich Biosynthesis of Cysteine , 2008, EcoSal Plus.

[8]  A. Norén,et al.  The role of NAD+ as a signal during nitrogenase switch-off in Rhodospirillum rubrum. , 1997, The Biochemical journal.

[9]  M. Ghirardi,et al.  Microalgae: a green source of renewable H(2). , 2000, Trends in biotechnology.

[10]  Debabrata Das,et al.  ADVANCES IN BIOLOGICAL HYDROGEN PRODUCTION PROCESSES , 2008 .

[11]  Maria J. Barbosa,et al.  Hydrogen production by photosynthetic bacteria : culture media, yields and efficiencies , 2001 .

[12]  Debabrata Das,et al.  Improvement of fermentative hydrogen production: various approaches , 2004, Applied Microbiology and Biotechnology.

[13]  A. Norén,et al.  Reversible membrane association of dinitrogenase reductase activating glycohydrolase in the regulation of nitrogenase activity in Rhodospirillum rubrum; dependence on GlnJ and AmtB1. , 2005, FEMS microbiology letters.

[14]  A. Newton,et al.  Role of SulP, a nuclear-encoded chloroplast sulfate permease, in sulfate transport and H2evolution in Chlamydomonas reinhardtii , 2005, Photosynthesis Research.

[15]  S. Kustu,et al.  Salmonella typhimurium apparently perceives external nitrogen limitation as internal glutamine limitation. , 1996, Journal of molecular biology.

[16]  P. Ludden,et al.  Regulation of biological nitrogen fixation. , 2000, The Journal of nutrition.

[17]  C. Hunter,et al.  Rhodospirillum rubrum Possesses a Variant of the bchP Gene, Encoding Geranylgeranyl-Bacteriopheophytin Reductase , 2002, Journal of bacteriology.

[18]  Matthew R Melnicki,et al.  Integrated biological hydrogen production , 2006 .

[19]  S. H. Hunter Organic Growth Essentials of the Aerobic Nonsulfur Photosynthetic Bacteria , 1946, Journal of bacteriology.

[20]  G. Roberts,et al.  Mutations in the draT and draG genes of Rhodospirillum rubrum result in loss of regulation of nitrogenase by reversible ADP-ribosylation , 1991, Journal of bacteriology.

[21]  E. Eroğlu,et al.  “Density equilibrium” method for the quantitative and rapid in situ determination of lipid, hydrocarbon, or biopolymer content in microorganisms , 2009, Biotechnology and bioengineering.

[22]  U. K. Laemmli,et al.  Cleavage of Structural Proteins during the Assembly of the Head of Bacteriophage T4 , 1970, Nature.

[23]  F. Rey,et al.  Redirection of Metabolism for Biological Hydrogen Production , 2007, Applied and Environmental Microbiology.

[24]  R. Bachofen,et al.  Hydrogen Production by the Photosynthetic Bacterium Rhodospirillum rubrum , 1979, Applied and environmental microbiology.

[25]  P. Cullen,et al.  Regulation of Nitrogen Fixation Genes , 1995 .

[26]  G. Cohen-bazire,et al.  Kinetic studies of pigment synthesis by non-sulfur purple bacteria. , 1957, Journal of cellular and comparative physiology.

[27]  T. Henrysson,et al.  Influence of the Endogenous Storage Lipid Poly-beta-Hydroxybutyrate on the Reducing Power Availability during Cometabolism of Trichloroethylene and Naphthalene by Resting Methanotrophic Mixed Cultures. , 1993, Applied and environmental microbiology.

[28]  Michael I. Jordan,et al.  Sulfur and Nitrogen Limitation in Escherichia coli K-12: Specific Homeostatic Responses , 2005, Journal of bacteriology.

[29]  Yaoping Zhang,et al.  Identification and functional characterization of NifA variants that are independent of GlnB activation in the photosynthetic bacterium Rhodospirillum rubrum. , 2008, Microbiology.

[30]  W. Page,et al.  Poly(β-hydroxybutyrate) extrusion from pleomorphic cells of Azotobacter vinelandii UWD , 1995 .

[31]  H. Beinert,et al.  The role of iron in the activation-inactivation of aconitase. , 1983, The Journal of biological chemistry.

[32]  Tabita Fr,et al.  A global two component signal transduction system that integrates the control of photosynthesis, carbon dioxide assimilation, and nitrogen fixation , 1996 .

[33]  Lance C Seefeldt,et al.  Nitrogen Fixation: The Mechanism of the Mo-Dependent Nitrogenase , 2003, Critical reviews in biochemistry and molecular biology.

[34]  Haroon S. Kheshgi,et al.  The Photobiological Production of Hydrogen: Potential Efficiency and Effectiveness as a Renewable Fuel , 2005, Critical reviews in microbiology.

[35]  Lemi Türker,et al.  Photobiological hydrogen production by using olive mill wastewater as a sole substrate source , 2004 .

[36]  A. Marchini,et al.  H and poly-β-hydroxybutyrate, two alternative chemicals from purple non sulfur bacteria , 1997, Biotechnology Letters.

[37]  Drews Gerhart Forty-five years of developmental biology of photosynthetic bacteria , 1996, Photosynthesis Research.

[38]  A. Melis,et al.  Biochemical and morphological characterization of sulfur-deprived and H2-producing Chlamydomonas reinhardtii (green alga) , 2002, Planta.

[39]  I. Eroglu,et al.  Poly-b-hydroxybutyrate accumulation and releasing by hydrogen producing bacteria, Rhodobacter sphaeroides O.U.001. A transmission electron microscopic study , 2006 .

[40]  D. Jendrossek Microbial degradation of polyesters: a review on extracellular poly(hydroxyalkanoic acid) depolymerases , 1998 .

[41]  松永 是,et al.  Biohydrogen II : an approach to environmentally acceptable technology , 2001 .

[42]  Yaoping Zhang,et al.  Posttranslational regulation of nitrogenase activity by anaerobiosis and ammonium in Azospirillum brasilense , 1993, Journal of bacteriology.

[43]  J. Kalinowski,et al.  The transcriptional regulator SsuR activates expression of the Corynebacterium glutamicum sulphonate utilization genes in the absence of sulphate , 2005, Molecular microbiology.

[44]  Matthew R Melnicki,et al.  Hydrogen production during stationary phase in purple photosynthetic bacteria , 2008 .

[45]  M. Merrick,et al.  PII Signal Transduction Proteins, Pivotal Players in Microbial Nitrogen Control , 2001, Microbiology and Molecular Biology Reviews.

[46]  R. Burris,et al.  In situ studies on N2 fixation using the acetylene reduction technique. , 1967, Proceedings of the National Academy of Sciences of the United States of America.

[47]  M. Hejazi,et al.  Milking of microalgae. , 2004, Trends in biotechnology.

[48]  A. Melis Photosynthetic H2 metabolism in Chlamydomonas reinhardtii (unicellular green algae) , 2007, Planta.

[49]  R. Philippis,et al.  Factors affecting poly-β-hydroxybutyrate accumulation in cyanobacteria and in purple non-sulfur bacteria , 1992 .

[50]  Lu Zhang,et al.  Sustained photobiological hydrogen gas production upon reversible inactivation of oxygen evolution in the green alga Chlamydomonas reinhardtii. , 2000, Plant physiology.

[51]  Kadir Aslan,et al.  Substrate consumption rates for hydrogen production by Rhodobacter sphaeroides in a column photobioreactor , 1999 .

[52]  G. Roberts,et al.  Artificial DNA-mediated genetic transformation of the photosynthetic nitrogen-fixing bacterium Rhodospirillum rubrum , 1991, Archives of Microbiology.

[53]  J. Merrick,et al.  DEPOLYMERIZATION OF POLY-β-HYDROXYBUTYRATE BY AN INTRACELLULAR ENZYME SYSTEM , 1964 .

[54]  K. Ormerod,et al.  Light-dependent utilization of organic compounds and photoproduction of molecular hydrogen by photosynthetic bacteria; relationships with nitrogen metabolism. , 1961, Archives of biochemistry and biophysics.

[55]  H. Gest,et al.  STUDIES ON THE METABOLISM OF PHOTOSYNTHETIC BACTERIA IV , 1949, Journal of bacteriology.

[56]  W. Lubitz,et al.  Aqueous release and purification of poly(β-hydroxybutyrate) from Escherichia coli , 1998 .

[57]  P. Ludden,et al.  Comparison of active and inactive forms of iron protein from Rhodospirillum rubrum. , 1982, The Biochemical journal.

[58]  Debabrata Das,et al.  The Prospect of Purple Non-Sulfur (PNS) Photosynthetic Bacteria for Hydrogen Production: The Present State of the Art , 2007 .

[59]  M. Merrick,et al.  Ammonium Sensing in Escherichia coli , 2004, Journal of Biological Chemistry.

[60]  P. Ludden,et al.  Change in subunit composition of the iron protein of nitrogenase from Rhodospirillum rubrum during activation and inactivation of iron protein. , 1982, The Biochemical journal.

[61]  P. Ludden,et al.  Effect of ammonia, darkness, and phenazine methosulfate on whole-cell nitrogenase activity and Fe protein modification in Rhodospirillum rubrum , 1984, Journal of bacteriology.

[62]  J. Willison,et al.  Hydrogenase, nitrogenase, and hydrogen metabolism in the photosynthetic bacteria. , 1985, Advances in microbial physiology.

[63]  F. B. Simpson,et al.  A nitrogen pressure of 50 atmospheres does not prevent evolution of hydrogen by nitrogenase. , 1984, Science.

[64]  Helmut Beinert,et al.  ACONITASE AS IRON-SULFUR PROTEIN, ENZYME, AND IRON-REGULATORY PROTEIN , 1996 .

[65]  I. Eroglu,et al.  Aspects of the metabolism of hydrogen production by Rhodobacter sphaeroides , 2002 .

[66]  Olaf Kruse,et al.  Photosynthesis: a blueprint for solar energy capture and biohydrogen production technologies , 2005, Photochemical & photobiological sciences : Official journal of the European Photochemistry Association and the European Society for Photobiology.

[67]  A. Khodursky,et al.  Nitrogen regulatory protein C-controlled genes of Escherichia coli: scavenging as a defense against nitrogen limitation. , 2000, Proceedings of the National Academy of Sciences of the United States of America.