LncVar: a database of genetic variation associated with long non-coding genes
暂无分享,去创建一个
Jianjun Luo | Zhen Fan | Xiaowei Chen | Runsheng Chen | Shunmin He | Yajing Hao | Ya Cui | Runsheng Chen | Shunmin He | Jianjun Luo | Xiaowei Chen | Yajing Hao | Zhen Fan | Ya Cui
[1] Mai Har Sham,et al. The role of SOX10 during enteric nervous system development. , 2013, Developmental biology.
[2] Krishna R. Kalari,et al. Gene Expression, Single Nucleotide Variant and Fusion Transcript Discovery in Archival Material from Breast Tumors , 2013, PloS one.
[3] Wei Li,et al. The polymorphism rs944289 predisposes to papillary thyroid carcinoma through a large intergenic noncoding RNA gene of tumor suppressor type , 2012, Proceedings of the National Academy of Sciences.
[4] Gaurav Kumar Pandey,et al. The risk-associated long noncoding RNA NBAT-1 controls neuroblastoma progression by regulating cell proliferation and neuronal differentiation. , 2014, Cancer cell.
[5] D. Bartel,et al. lincRNAs: Genomics, Evolution, and Mechanisms , 2013, Cell.
[6] Brian T. Lee,et al. The UCSC Genome Browser database: 2015 update , 2014, Nucleic Acids Res..
[7] Sheng Li,et al. The pivotal regulatory landscape of RNA modifications. , 2014, Annual review of genomics and human genetics.
[8] Jean-Michel Claverie,et al. The statistical significance of nucleotide position-weight matrix matches , 1996, Comput. Appl. Biosci..
[9] William Stafford Noble,et al. Fine-scale chromatin interaction maps reveal the cis-regulatory landscape of human lincRNA genes , 2014, Nature Methods.
[10] Minoru Yoshida,et al. RNA-Methylation-Dependent RNA Processing Controls the Speed of the Circadian Clock , 2013, Cell.
[11] John M. Shelton,et al. A Micropeptide Encoded by a Putative Long Noncoding RNA Regulates Muscle Performance , 2015, Cell.
[12] E. Rankin,et al. Hypoxic control of metastasis , 2016, Science.
[13] Jingyuan Fu,et al. Human Disease-Associated Genetic Variation Impacts Large Intergenic Non-Coding RNA Expression , 2013, PLoS genetics.
[14] An-Yuan Guo,et al. lncRNASNP: a database of SNPs in lncRNAs and their potential functions in human and mouse , 2014, Nucleic Acids Res..
[15] Michael F. Lin,et al. Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals , 2009, Nature.
[16] Bing Ren,et al. N6-methyladenosine-dependent regulation of messenger RNA stability , 2013 .
[17] M. Albà,et al. Long non-coding RNAs as a source of new peptides , 2014, eLife.
[18] Yan Li,et al. A high-resolution map of three-dimensional chromatin interactome in human cells , 2013, Nature.
[19] Fang Fang,et al. FusionMap: detecting fusion genes from next-generation sequencing data at base-pair resolution , 2011, Bioinform..
[20] R. Guigó,et al. Transcriptome genetics using second generation sequencing in a Caucasian population , 2010, Nature.
[21] Yi Xing,et al. m(6)A RNA modification controls cell fate transition in mammalian embryonic stem cells. , 2014, Cell stem cell.
[22] David J. Arenillas,et al. JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles , 2015, Nucleic Acids Res..
[23] Hongzhe Li,et al. A functional genomic approach identifies FAL1 as an oncogenic long noncoding RNA that associates with BMI1 and represses p21 expression in cancer. , 2014, Cancer cell.
[24] Nikolaus Rajewsky,et al. Identification of small ORFs in vertebrates using ribosome footprinting and evolutionary conservation , 2014, The EMBO journal.
[25] Nicholas T. Ingolia,et al. Ribosome Profiling of Mouse Embryonic Stem Cells Reveals the Complexity and Dynamics of Mammalian Proteomes , 2011, Cell.
[26] M. Kupiec,et al. Topology of the human and mouse m6A RNA methylomes revealed by m6A-seq , 2012, Nature.
[27] O. Elemento,et al. Comprehensive Analysis of mRNA Methylation Reveals Enrichment in 3′ UTRs and near Stop Codons , 2012, Cell.
[28] B. Moss,et al. Nucleotide sequences at the N6-methyladenosine sites of HeLa cell messenger ribonucleic acid. , 1977, Biochemistry.
[29] Nicholas T. Ingolia,et al. Genome-Wide Analysis in Vivo of Translation with Nucleotide Resolution Using Ribosome Profiling , 2009, Science.
[30] James B. Brown,et al. Long noncoding RNAs are rarely translated in two human cell lines , 2012, Genome research.
[31] Simon Hess,et al. The fat mass and obesity associated gene (Fto) regulates activity of the dopaminergic midbrain circuitry , 2013, Nature Neuroscience.
[32] Yusuke Nakamura,et al. Genome-Wide Association Study of Pancreatic Cancer in Japanese Population , 2010, PloS one.
[33] J. Dekker,et al. The long-range interaction landscape of gene promoters , 2012, Nature.
[34] Bo Wang,et al. A genome-wide association study combining pathway analysis for typical sporadic amyotrophic lateral sclerosis in Chinese Han populations , 2014, Neurobiology of Aging.
[35] Lior Pachter,et al. Sequence Analysis , 2020, Definitions.
[36] R J Roberts,et al. Sequence specificity of the human mRNA N6-adenosine methylase in vitro. , 1990, Nucleic acids research.
[37] Clifford A. Meyer,et al. Model-based Analysis of ChIP-Seq (MACS) , 2008, Genome Biology.
[38] Yang Wang,et al. N6-methyladenosine modification destabilizes developmental regulators in embryonic stem cells , 2014, Nature Cell Biology.
[39] Zhike Lu,et al. Unique Features of the m6A Methylome in Arabidopsis thaliana , 2014, Nature Communications.
[40] Süleyman Cenk Sahinalp,et al. deFuse: An Algorithm for Gene Fusion Discovery in Tumor RNA-Seq Data , 2011, PLoS Comput. Biol..
[41] Wei Wu,et al. NONCODEv4: exploring the world of long non-coding RNA genes , 2013, Nucleic Acids Res..
[42] Peng Wang,et al. LincSNP: a database of linking disease-associated SNPs to human large intergenic non-coding RNAs , 2014, BMC Bioinformatics.
[43] S. Dhanasekaran,et al. The landscape of long noncoding RNAs in the human transcriptome , 2015, Nature Genetics.
[44] Peggy Hall,et al. The NHGRI GWAS Catalog, a curated resource of SNP-trait associations , 2013, Nucleic Acids Res..
[45] B. Kuster,et al. Mass-spectrometry-based draft of the human proteome , 2014, Nature.
[46] L. Mirny,et al. Exploring the three-dimensional organization of genomes: interpreting chromatin interaction data , 2013, Nature Reviews Genetics.
[47] Naoki Takahashi,et al. The GAS5 (growth arrest-specific transcript 5) gene fuses to BCL6 as a result of t(1;3)(q25;q27) in a patient with B-cell lymphoma. , 2008, Cancer genetics and cytogenetics.
[48] D. Haussler,et al. Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes. , 2005, Genome research.
[49] J. Rinn,et al. Peptidomic discovery of short open reading frame-encoded peptides in human cells , 2012, Nature chemical biology.
[50] Chuan He,et al. FTO-dependent demethylation of N6-methyladenosine regulates mRNA splicing and is required for adipogenesis , 2014, Cell Research.
[51] Zhike Lu,et al. m6A-dependent regulation of messenger RNA stability , 2013, Nature.
[52] Aaron R. Quinlan,et al. BIOINFORMATICS APPLICATIONS NOTE , 2022 .