Methods to reconstruct and compare transcriptional regulatory networks.
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[1] Andreas Tauch,et al. CoryneRegNet 3.0--an interactive systems biology platform for the analysis of gene regulatory networks in corynebacteria and Escherichia coli. , 2007, Journal of biotechnology.
[2] Martha L Bulyk,et al. DNA microarray technologies for measuring protein-DNA interactions. , 2006, Current opinion in biotechnology.
[3] J. Collado-Vides,et al. Bacterial regulatory networks are extremely flexible in evolution , 2006, Nucleic acids research.
[4] M Madan Babu,et al. Uncovering a hidden distributed architecture behind scale-free transcriptional regulatory networks. , 2006, Journal of molecular biology.
[5] L. Aravind,et al. Comprehensive analysis of combinatorial regulation using the transcriptional regulatory network of yeast. , 2006, Journal of molecular biology.
[6] S. Teichmann,et al. Evolutionary dynamics of prokaryotic transcriptional regulatory networks. , 2006, Journal of molecular biology.
[7] Julio Collado-Vides,et al. RegulonDB (version 5.0): Escherichia coli K-12 transcriptional regulatory network, operon organization, and growth conditions , 2005, Nucleic Acids Res..
[8] Hyunsoo Kim,et al. Unraveling condition specific gene transcriptional regulatory networks in Saccharomyces cerevisiae , 2006, BMC Bioinformatics.
[9] J. Baumbach,et al. CoryneRegNet: An ontology-based data warehouse of corynebacterial transcription factors and regulatory networks , 2006, BMC Genomics.
[10] Ting Wang,et al. Identifying the conserved network of cis-regulatory sites of a eukaryotic genome. , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[11] R. Albert. Scale-free networks in cell biology , 2005, Journal of Cell Science.
[12] Adam A. Margolin,et al. Reverse engineering of regulatory networks in human B cells , 2005, Nature Genetics.
[13] Mark J. van der Laan,et al. A Statistical Method for Constructing Transcriptional Regulatory Networks Using Gene Expression and Sequence Data , 2005, J. Comput. Biol..
[14] Inna Dubchak,et al. Reconstruction of regulatory and metabolic pathways in metal-reducing δ-proteobacteria , 2004, Genome Biology.
[15] Inna Dubchak,et al. Reconstruction Of Regulatory And Metabolic Pathways In Metal-Reducing delta-Proteobacteria , 2004 .
[16] Sun-Chong Wang,et al. Reconstructing Genetic Networks from Time Ordered Gene Expression Data Using Bayesian Method with Global Search Algorithm , 2004, J. Bioinform. Comput. Biol..
[17] Nicola J. Rinaldi,et al. Transcriptional regulatory code of a eukaryotic genome , 2004, Nature.
[18] Uri Alon,et al. Efficient sampling algorithm for estimating subgraph concentrations and detecting network motifs , 2004, Bioinform..
[19] W. Wasserman,et al. Regulog analysis: detection of conserved regulatory networks across bacteria: application to Staphylococcus aureus. , 2004, Genome research.
[20] S Miyano,et al. Open source clustering software. , 2004, Bioinformatics.
[21] M. Gerstein,et al. Structure and evolution of transcriptional regulatory networks. , 2004, Current opinion in structural biology.
[22] M. Gerstein,et al. Annotation transfer between genomes: protein-protein interologs and protein-DNA regulogs. , 2004, Genome research.
[23] S. Teichmann,et al. Gene regulatory network growth by duplication , 2004, Nature Genetics.
[24] Ronald W. Davis,et al. Maximizing the potential of functional genomics , 2004, Nature Reviews Genetics.
[25] A. Barabasi,et al. Network biology: understanding the cell's functional organization , 2004, Nature Reviews Genetics.
[26] Zhiping Weng,et al. Computational inference of transcriptional regulatory networks from expression profiling and transcription factor binding site identification. , 2004, Nucleic acids research.
[27] Kenta Nakai,et al. BTBS: database of transcriptional regulation in Bacillus subtilis and its contribution to comparative genomics , 2004, Nucleic Acids Res..
[28] Feng Gao,et al. Defining transcriptional networks through integrative modeling of mRNA expression and transcription factor binding data , 2004, BMC Bioinformatics.
[29] Nicola J. Rinaldi,et al. Computational discovery of gene modules and regulatory networks , 2003, Nature Biotechnology.
[30] Mark Gerstein,et al. Prediction of regulatory networks: genome-wide identification of transcription factor targets from gene expression data , 2003, Bioinform..
[31] J. Collins,et al. Inferring Genetic Networks and Identifying Compound Mode of Action via Expression Profiling , 2003, Science.
[32] D. Pe’er,et al. Module networks: identifying regulatory modules and their condition-specific regulators from gene expression data , 2003, Nature Genetics.
[33] William Stafford Noble,et al. Matrix2png: a utility for visualizing matrix data , 2003, Bioinform..
[34] Partha S. Vasisht. Computational Analysis of Microarray Data , 2003 .
[35] M. Gerstein,et al. Complex transcriptional circuitry at the G1/S transition in Saccharomyces cerevisiae. , 2002, Genes & development.
[36] Nicola J. Rinaldi,et al. Transcriptional Regulatory Networks in Saccharomyces cerevisiae , 2002, Science.
[37] E. Koonin,et al. The role of lineage-specific gene family expansion in the evolution of eukaryotes. , 2002, Genome research.
[38] P. Bourgine,et al. Topological and causal structure of the yeast transcriptional regulatory network , 2002, Nature Genetics.
[39] S. Shen-Orr,et al. Network motifs in the transcriptional regulation network of Escherichia coli , 2002, Nature Genetics.
[40] H. Bussemaker,et al. Regulatory element detection using correlation with expression , 2001, Nature Genetics.
[41] R. Young,et al. Biomedical Discovery with DNA Arrays , 2000, Cell.
[42] Thomas L. Madden,et al. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. , 1997, Nucleic acids research.