Urinary extracellular vesicles contain mature transcriptome enriched in circular and long noncoding RNAs with functional significance in prostate cancer
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L. Martin-Jaular | C. Théry | A. De la taille | V. Firlej | D. Loew | F. Dingli | A. Morillon | F. Vacherot | D. Destouches | M. Gabriel | M. San-Roman | N. Vogt | A. Almeida | Floriane Petit | Matthieu Lejars | Rocco Cipolla | L. Martín-Jaular | San-Roman Mabel | Marc Gabriel
[1] T. M. Zanotto,et al. MicroRNA sequence codes for small extracellular vesicle release and cellular retention , 2021, Nature.
[2] Ming-zhu Yin,et al. KDM5B promotes immune evasion by recruiting SETDB1 to silence retroelements , 2021, Nature.
[3] M. Taheri,et al. A review on the role of PCAT6 lncRNA in tumorigenesis. , 2021, Biomedicine & pharmacotherapy = Biomedecine & pharmacotherapie.
[4] A. Morillon,et al. From Yeast to Mammals, the Nonsense-Mediated mRNA Decay as a Master Regulator of Long Non-Coding RNAs Functional Trajectory , 2021, Non-coding RNA.
[5] V. Pascual,et al. Extracellular vesicle– and particle-mediated communication shapes innate and adaptive immune responses , 2021, The Journal of experimental medicine.
[6] G. Schroth,et al. The RNA Atlas expands the catalog of human non-coding RNAs , 2021, Nature Biotechnology.
[7] Jacob D. Jaffe,et al. Epigenetic silencing by SETDB1 suppresses tumour intrinsic immunogenicity , 2021, Nature.
[8] A. Hill,et al. Urinary extracellular vesicles: A position paper by the Urine Task Force of the International Society for Extracellular Vesicles , 2021, Journal of extracellular vesicles.
[9] T. H. van der Kwast,et al. Single-cell analysis reveals transcriptomic remodellings in distinct cell types that contribute to human prostate cancer progression , 2021, Nature Cell Biology.
[10] Gene W. Yeo,et al. Transcriptome-wide profiles of circular RNA and RNA-binding protein interactions reveal effects on circular RNA biogenesis and cancer pathway expression , 2020, Genome medicine.
[11] L. Groop,et al. Comparison of urinary extracellular vesicle isolation methods for transcriptomic biomarker research in diabetic kidney disease , 2020, Journal of extracellular vesicles.
[12] Rienk Nieuwland,et al. Methods for Separation and Characterization of Extracellular Vesicles: Results of a Worldwide Survey Performed by the ISEV Rigor and Standardization Subcommittee , 2020, Cells.
[13] Xuesen Dong,et al. Circular RNA and its potential as prostate cancer biomarkers , 2020, World journal of clinical oncology.
[14] Amber L. Simpson,et al. Extracellular Vesicle and Particle Biomarkers Define Multiple Human Cancers , 2020, Cell.
[15] Ling-Ling Chen. The expanding regulatory mechanisms and cellular functions of circular RNAs , 2020, Nature Reviews Molecular Cell Biology.
[16] Rory Johnson,et al. Cancer LncRNA Census 2 (CLC2): an enhanced resource reveals clinical features of cancer lncRNAs , 2020, bioRxiv.
[17] R. Kalluri,et al. Exosomes as a Multicomponent Biomarker Platform in Cancer. , 2020, Trends in cancer.
[18] M. Mann,et al. Pervasive functional translation of noncanonical human open reading frames , 2020, Science.
[19] Raghu Kalluri,et al. The biology, function, and biomedical applications of exosomes , 2020, Science.
[20] P. Ivanov,et al. Fragmentation of extracellular ribosomes and tRNAs shapes the extracellular RNAome , 2020, bioRxiv.
[21] P. Deininger,et al. Comparative analysis on the expression of L1 loci using various RNA-Seq preparations , 2020, Mobile DNA.
[22] F. Zhao,et al. Accurate quantification of circular RNAs identifies extensive circular isoform switching events , 2020, Nature Communications.
[23] D. Gautheret,et al. Reference-free transcriptome exploration reveals novel RNAs for prostate cancer diagnosis , 2019, Life Science Alliance.
[24] G. Schroth,et al. Charting extracellular transcriptomes in The Human Biofluid RNA Atlas , 2019, bioRxiv.
[25] V. Marchand,et al. Diversity and heterogeneity of extracellular RNA in human plasma. , 2019, Biochimie.
[26] Jørgen Kjems,et al. The biogenesis, biology and characterization of circular RNAs , 2019, Nature Reviews Genetics.
[27] J. Vandesompele,et al. Performance assessment of total RNA sequencing of human biofluids and extracellular vesicles , 2019, Scientific Reports.
[28] Jiong Wu,et al. Extracellular Vesicles Long RNA Sequencing Reveals Abundant mRNA, circRNA, and lncRNA in Human Blood as Potential Biomarkers for Cancer Diagnosis. , 2019, Clinical chemistry.
[29] J. Lötvall,et al. Advances in therapeutic applications of extracellular vesicles , 2019, Science Translational Medicine.
[30] Ryan M Spengler,et al. Phospho‐RNA‐seq: a modified small RNA‐seq method that reveals circulating mRNA and lncRNA fragments as potential biomarkers in human plasma , 2019, The EMBO journal.
[31] R. Schekman,et al. Distinct mechanisms of microRNA sorting into cancer cell-derived extracellular vesicle subtypes , 2019, bioRxiv.
[32] Eliot T. McKinley,et al. Transfer of Functional Cargo in Exomeres , 2019, Cell reports.
[33] Dylan T Burnette,et al. Reassessment of Exosome Composition , 2019, Cell.
[34] Alexander R. Pico,et al. exRNA Atlas Analysis Reveals Distinct Extracellular RNA Cargo Types and Their Carriers Present across Human Biofluids , 2019, Cell.
[35] Leng Han,et al. Circular RNAs as promising biomarkers in cancer: detection, function, and beyond , 2019, Genome Medicine.
[36] Sang Kook Lee,et al. Circular RNAs in Cancer , 2019, Molecular therapy. Nucleic acids.
[37] S. Dhanasekaran,et al. The Landscape of Circular RNA in Cancer , 2019, Cell.
[38] Alain Bergeron,et al. Widespread and Functional RNA Circularization in Localized Prostate Cancer , 2019, Cell.
[39] Clotilde Théry,et al. Specificities of secretion and uptake of exosomes and other extracellular vesicles for cell-to-cell communication , 2019, Nature Cell Biology.
[40] Martin Eisenacher,et al. The PRIDE database and related tools and resources in 2019: improving support for quantification data , 2018, Nucleic Acids Res..
[41] P. Gendron,et al. Noncoding regions are the main source of targetable tumor-specific antigens , 2018, Science Translational Medicine.
[42] Jing Xu,et al. Minimal information for studies of extracellular vesicles 2018 (MISEV2018): a position statement of the International Society for Extracellular Vesicles and update of the MISEV2014 guidelines , 2018, Journal of Extracellular Vesicles.
[43] M. Bonin,et al. Evaluation of serum extracellular vesicle isolation methods for profiling miRNAs by next-generation sequencing , 2018, Journal of extracellular vesicles.
[44] Graça Raposo,et al. Shedding light on the cell biology of extracellular vesicles , 2018, Nature Reviews Molecular Cell Biology.
[45] Hai Wu,et al. Androgen-responsive circular RNA circSMARCA5 is up-regulated and promotes cell proliferation in prostate cancer. , 2017, Biochemical and biophysical research communications.
[46] M. Nielsen,et al. NetMHCpan-4.0: Improved Peptide–MHC Class I Interaction Predictions Integrating Eluted Ligand and Peptide Binding Affinity Data , 2017, The Journal of Immunology.
[47] G. Calin,et al. A total transcriptome profiling method for plasma-derived extracellular vesicles: applications for liquid biopsies , 2017, Scientific Reports.
[48] Bernd Giebel,et al. Concise Review: Developing Best‐Practice Models for the Therapeutic Use of Extracellular Vesicles , 2017, Stem cells translational medicine.
[49] P. Bradley,et al. Quantifiable predictive features define epitope-specific T cell receptor repertoires , 2017, Nature.
[50] Patrizia Agostinis,et al. EV-TRACK: transparent reporting and centralizing knowledge in extracellular vesicle research , 2017, Nature Methods.
[51] S. Heath,et al. A Comparison of RNA-Seq Results from Paired Formalin-Fixed Paraffin-Embedded and Fresh-Frozen Glioblastoma Tissue Samples , 2017, PloS one.
[52] Joshua M. Weiss,et al. Extracellular Vesicles in Cancer: Cell-to-Cell Mediators of Metastasis. , 2016, Cancer cell.
[53] William Stafford Noble,et al. Fast and Accurate Protein False Discovery Rates on Large-Scale Proteomics Data Sets with Percolator 3.0 , 2016, Journal of The American Society for Mass Spectrometry.
[54] Clotilde Théry,et al. Communication by Extracellular Vesicles: Where We Are and Where We Need to Go , 2016, Cell.
[55] Minghui Wang,et al. Efficient Test and Visualization of Multi-Set Intersections , 2015, Scientific Reports.
[56] Ralph Weissleder,et al. Visualization and tracking of tumour extracellular vesicle delivery and RNA translation using multiplexed reporters , 2015, Nature Communications.
[57] D. Bartel,et al. Principles of long noncoding RNA evolution derived from direct comparison of transcriptomes in 17 species. , 2015, Cell reports.
[58] R. Zeillinger,et al. Correlation of circular RNA abundance with proliferation – exemplified with colorectal and ovarian cancer, idiopathic lung fibrosis, and normal human tissues , 2015, Scientific Reports.
[59] S. Dhanasekaran,et al. The landscape of long noncoding RNAs in the human transcriptome , 2015, Nature Genetics.
[60] A. Sivachenko,et al. Massively Parallel Sequencing of Human Urinary Exosome/Microvesicle RNA Reveals a Predominance of Non-Coding RNA , 2014, PloS one.
[61] J. Nielsen,et al. Analysis of the Human Tissue-specific Expression by Genome-wide Integration of Transcriptomics and Antibody-based Proteomics. , 2014, Molecular & cellular proteomics : MCP.
[62] F. Sánchez‐Madrid,et al. Sumoylated hnRNPA2B1 controls the sorting of miRNAs into exosomes through binding to specific motifs , 2013, Nature Communications.
[63] J. Kjems,et al. Natural RNA circles function as efficient microRNA sponges , 2013, Nature.
[64] Michael K. Slevin,et al. Circular RNAs are abundant, conserved, and associated with ALU repeats. , 2013, RNA.
[65] Howard Y. Chang,et al. Genome regulation by long noncoding RNAs. , 2012, Annual review of biochemistry.
[66] Nicholas T. Ingolia,et al. The translational landscape of mTOR signalling steers cancer initiation and metastasis , 2012, Nature.
[67] J. Rinn,et al. Large non-coding RNAs: missing links in cancer? , 2010, Human molecular genetics.
[68] X. Breakefield,et al. Prostate cancer-derived urine exosomes: a novel approach to biomarkers for prostate cancer , 2009, British Journal of Cancer.
[69] Johan Skog,et al. Glioblastoma microvesicles transport RNA and protein that promote tumor growth and provide diagnostic biomarkers , 2008, Nature Cell Biology.
[70] Emmanuel Barillot,et al. myProMS, a web server for management and validation of mass spectrometry‐based proteomic data , 2007, Proteomics.
[71] J. Lötvall,et al. Exosome-mediated transfer of mRNAs and microRNAs is a novel mechanism of genetic exchange between cells , 2007, Nature Cell Biology.
[72] Aled Clayton,et al. Isolation and Characterization of Exosomes from Cell Culture Supernatants and Biological Fluids , 2006, Current protocols in cell biology.
[73] L. Zitvogel,et al. Exosomes as Potent Cell-Free Peptide-Based Vaccine. II. Exosomes in CpG Adjuvants Efficiently Prime Naive Tc1 Lymphocytes Leading to Tumor Rejection 1 , 2004, The Journal of Immunology.
[74] Laurence Zitvogel,et al. Tumor-derived exosomes are a source of shared tumor rejection antigens for CTL cross-priming , 2001, Nature Medicine.