Using a single fluorescent reporter gene to infer half-life of extrinsic noise and other parameters of gene expression.

[1]  J. Paulsson Summing up the noise in gene networks , 2004, Nature.

[2]  D. McMillen,et al.  Effects of protein maturation on the noise in gene expression. , 2008, Physical review. E, Statistical, nonlinear, and soft matter physics.

[3]  P. Swain,et al.  Gene Regulation at the Single-Cell Level , 2005, Science.

[4]  Carrie L Iwema,et al.  Faculty of 1000 Biology. , 2008 .

[5]  J. Elf,et al.  Fast evaluation of fluctuations in biochemical networks with the linear noise approximation. , 2003, Genome research.

[6]  Alfonso Martinez Arias,et al.  Filtering transcriptional noise during development: concepts and mechanisms , 2006, Nature Reviews Genetics.

[7]  Marco A J Iafolla,et al.  Extracting biochemical parameters for cellular modeling: A mean-field approach. , 2006, The journal of physical chemistry. B.

[8]  G. Huber,et al.  The tethered infinitesimal tori and spheres algorithm: a versatile calculator for axisymmetric problems in equilibrium membrane mechanics. , 2009, Biophysical journal.

[9]  M. Chalfie GREEN FLUORESCENT PROTEIN , 1995, Photochemistry and photobiology.

[10]  Andrew J. Millar,et al.  Reconstruction of transcriptional dynamics from gene reporter data using differential equations , 2008, Bioinform..

[11]  Markus Kollmann,et al.  Quantifying origins of cell-to-cell variations in gene expression. , 2008, Biophysical journal.

[12]  M. L. Simpson,et al.  Gene network shaping of inherent noise spectra , 2006, Nature.

[13]  Nam Ki Lee,et al.  Single-molecule approach to molecular biology in living bacterial cells. , 2008, Annual review of biophysics.

[14]  C. Gardiner Handbook of Stochastic Methods , 1983 .

[15]  Jacek Miekisz,et al.  Translational repression contributes greater noise to gene expression than transcriptional repression. , 2009, Biophysical journal.

[16]  Alexander van Oudenaarden,et al.  Stochastic gene expression out-of-steady-state in the cyanobacterial circadian clock , 2007, Nature.

[17]  P. Swain,et al.  Intrinsic and extrinsic contributions to stochasticity in gene expression , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[18]  Takeharu Nagai,et al.  Shift anticipated in DNA microarray market , 2002, Nature Biotechnology.

[19]  Ertugrul M. Ozbudak,et al.  Regulation of noise in the expression of a single gene , 2002, Nature Genetics.

[20]  David A. Rand,et al.  Bayesian inference of biochemical kinetic parameters using the linear noise approximation , 2009, BMC Bioinformatics.

[21]  A. Oudenaarden,et al.  Nature, Nurture, or Chance: Stochastic Gene Expression and Its Consequences , 2008, Cell.

[22]  J. Raser,et al.  Noise in Gene Expression: Origins, Consequences, and Control , 2005, Science.

[23]  M. Thattai,et al.  Intrinsic noise in gene regulatory networks , 2001, Proceedings of the National Academy of Sciences of the United States of America.

[24]  David A. Rand,et al.  Bayesian inference for dynamic transcriptional regulation; the Hes1 system as a case study , 2007, Bioinform..

[25]  Julien F. Ollivier,et al.  Colored extrinsic fluctuations and stochastic gene expression , 2008, Molecular systems biology.

[26]  N. Shephard,et al.  Likelihood INference for Discretely Observed Non-linear Diffusions , 2001 .

[27]  Dani Gamerman,et al.  Markov Chain Monte Carlo: Stochastic Simulation for Bayesian Inference , 1997 .

[28]  W. Ebeling Stochastic Processes in Physics and Chemistry , 1995 .

[29]  David B. Dunson,et al.  Bayesian Data Analysis , 2010 .

[30]  J Timmer,et al.  Parameter estimation in stochastic biochemical reactions. , 2006, Systems biology.

[31]  Timothy C Elston,et al.  Mathematical analysis and quantification of fluorescent proteins as transcriptional reporters. , 2008, Biophysical journal.

[32]  Luke Jakobowski,et al.  Systematic Reduction of a Stochastic Signalling Cascade Model , 2006, Journal of biological physics.

[33]  D. Wilkinson,et al.  Bayesian Inference for Stochastic Kinetic Models Using a Diffusion Approximation , 2005, Biometrics.

[34]  R. Milo,et al.  Variability and memory of protein levels in human cells , 2006, Nature.

[35]  Thomas D Pollard,et al.  Counting Cytokinesis Proteins Globally and Locally in Fission Yeast , 2005, Science.

[36]  P. Guptasarma,et al.  Does replication-induced transcription regulate synthesis of the myriad low copy number proteins of Escherichia coli? , 1995, BioEssays : news and reviews in molecular, cellular and developmental biology.

[37]  A. van Oudenaarden,et al.  Noise Propagation in Gene Networks , 2005, Science.

[38]  Jeffrey W. Smith,et al.  Stochastic Gene Expression in a Single Cell , 2022 .

[39]  Mads Kærn,et al.  Noise in eukaryotic gene expression , 2003, Nature.

[40]  M. Chalfie,et al.  Green fluorescent protein as a marker for gene expression. , 1994, Science.

[41]  R. Yu,et al.  Single-cell quantification of molecules and rates using open-source microscope-based cytometry , 2007, Nature Methods.

[42]  T. Kepler,et al.  Stochasticity in transcriptional regulation: origins, consequences, and mathematical representations. , 2001, Biophysical journal.

[43]  Nir Friedman,et al.  Linking stochastic dynamics to population distribution: an analytical framework of gene expression. , 2006, Physical review letters.

[44]  James R. Johnson,et al.  Oscillations in NF-κB Signaling Control the Dynamics of Gene Expression , 2004, Science.