Radiomics-based features for pattern recognition of lung cancer histopathology and metastases

BACKGROUND AND OBJECTIVES lung cancer is the leading cause of cancer-related deaths in the world, and its poor prognosis varies markedly according to tumor staging. Computed tomography (CT) is the imaging modality of choice for lung cancer evaluation, being used for diagnosis and clinical staging. Besides tumor stage, other features, like histopathological subtype, can also add prognostic information. In this work, radiomics-based CT features were used to predict lung cancer histopathology and metastases using machine learning models. METHODS local image datasets of confirmed primary malignant pulmonary tumors were retrospectively evaluated for testing and validation. CT images acquired with same protocol were semiautomatically segmented. Tumors were characterized by clinical features and computer attributes of intensity, histogram, texture, shape, and volume. Three machine learning classifiers used up to 100 selected features to perform the analysis. RESULTS radiomics-based features yielded areas under the receiver operating characteristic curve of 0.89, 0.97, and 0.92 at testing and 0.75, 0.71, and 0.81 at validation for lymph nodal metastasis, distant metastasis, and histopathology pattern recognition, respectively. CONCLUSIONS the radiomics characterization approach presented great potential to be used in a computational model to aid lung cancer histopathological subtype diagnosis as a "virtual biopsy" and metastatic prediction for therapy decision support without the necessity of a whole-body imaging scanning.

[1]  Pat Langley,et al.  Estimating Continuous Distributions in Bayesian Classifiers , 1995, UAI.

[2]  Chi Wan Koo,et al.  Pulmonary Nodule Characterization, Including Computer Analysis and Quantitative Features , 2015, Journal of thoracic imaging.

[3]  Jinzhong Yang,et al.  Preliminary investigation into sources of uncertainty in quantitative imaging features , 2015, Comput. Medical Imaging Graph..

[4]  Philippe Lambin,et al.  Quantitative radiomics studies for tissue characterization: a review of technology and methodological procedures , 2017, The British journal of radiology.

[5]  Robert M. Haralick,et al.  Textural Features for Image Classification , 1973, IEEE Trans. Syst. Man Cybern..

[6]  Larry A. Rendell,et al.  A Practical Approach to Feature Selection , 1992, ML.

[7]  P. Lambin,et al.  Decoding tumour phenotype by noninvasive imaging using a quantitative radiomics approach , 2014, Nature Communications.

[8]  H. Rusinek,et al.  Lung Adenocarcinoma: Correlation of Quantitative CT Findings with Pathologic Findings. , 2016, Radiology.

[9]  Igor Kononenko,et al.  Estimating Attributes: Analysis and Extensions of RELIEF , 1994, ECML.

[10]  B. Erickson,et al.  Machine Learning for Medical Imaging. , 2017, Radiographics : a review publication of the Radiological Society of North America, Inc.

[11]  Marie-Françoise Devaux,et al.  COMPUTATION OF MINKOWSKI MEASURES ON 2D AND 3D BINARY IMAGES , 2011 .

[12]  Mary M. Galloway,et al.  Texture analysis using gray level run lengths , 1974 .

[13]  S. O'toole,et al.  What's new in non-small cell lung cancer for pathologists: the importance of accurate subtyping, EGFR mutations and ALK rearrangements. , 2011, Pathology.

[14]  Benjamin Haibe-Kains,et al.  Radiomic feature clusters and Prognostic Signatures specific for Lung and Head & Neck cancer , 2015, Scientific Reports.

[15]  Heinz-Peter Schlemmer,et al.  Morphological computed tomography features of surgically resectable pulmonary squamous cell carcinomas: impact on prognosis and comparison with adenocarcinomas. , 2014, European journal of radiology.

[16]  Ron Kohavi,et al.  Wrappers for Feature Subset Selection , 1997, Artif. Intell..

[17]  Denise R. Aberle,et al.  Radiologic implications of the 2011 classification of adenocarcinoma of the lung. , 2013, Radiology.

[18]  Jinzhong Yang,et al.  Computational resources for radiomics , 2016 .

[19]  Wei Shen,et al.  Multi-crop Convolutional Neural Networks for lung nodule malignancy suspiciousness classification , 2017, Pattern Recognit..

[20]  Paulo Mazzoncini de Azevedo-Marques,et al.  Radiomics-Based Recognition of Metastatic and Histopathological Patterns of Lung Cancer , 2017 .

[21]  James V. Miller,et al.  GBM Volumetry using the 3D Slicer Medical Image Computing Platform , 2013, Scientific Reports.

[22]  D. Wood,et al.  The Pseudocavitation Sign of Lung Adenocarcinoma: A Distinguishing Feature and Imaging Biomarker of Lepidic Growth , 2015, Journal of thoracic imaging.

[23]  P. Lambin,et al.  Exploratory Study to Identify Radiomics Classifiers for Lung Cancer Histology , 2016, Front. Oncol..

[24]  Robert King,et al.  Textural features corresponding to textural properties , 1989, IEEE Trans. Syst. Man Cybern..

[25]  Olivier Gevaert,et al.  Core samples for radiomics features that are insensitive to tumor segmentation: method and pilot study using CT images of hepatocellular carcinoma , 2015, Journal of medical imaging.

[26]  David W. Aha,et al.  Instance-Based Learning Algorithms , 1991, Machine Learning.

[27]  Peter Balter,et al.  Can radiomics features be reproducibly measured from CBCT images for patients with non-small cell lung cancer? , 2015, Medical physics.

[28]  Peter A Balter,et al.  Impact of image preprocessing on the volume dependence and prognostic potential of radiomics features in non-small cell lung cancer , 2016 .

[29]  D Marr,et al.  Theory of edge detection , 1979, Proceedings of the Royal Society of London. Series B. Biological Sciences.

[30]  Jinzhong Yang,et al.  Uncertainty analysis of quantitative imaging features extracted from contrast-enhanced CT in lung tumors , 2016, Comput. Medical Imaging Graph..

[31]  Y. Ohno,et al.  Diffusion-weighted MRI versus 18F-FDG PET/CT: performance as predictors of tumor treatment response and patient survival in patients with non-small cell lung cancer receiving chemoradiotherapy. , 2012, AJR. American journal of roentgenology.

[32]  Andras Lasso,et al.  SlicerRT: radiation therapy research toolkit for 3D Slicer. , 2012, Medical physics.

[33]  M. Hatt,et al.  Responsible Radiomics Research for Faster Clinical Translation , 2017, The Journal of Nuclear Medicine.

[34]  Wei Qian,et al.  Fusion of Quantitative Image and Genomic Biomarkers to Improve Prognosis Assessment of Early Stage Lung Cancer Patients , 2016, IEEE Transactions on Biomedical Engineering.

[35]  Kunio Doi,et al.  Computer-aided diagnosis in medical imaging: Historical review, current status and future potential , 2007, Comput. Medical Imaging Graph..

[36]  Ron Kikinis,et al.  Volumetric CT-based segmentation of NSCLC using 3D-Slicer , 2013, Scientific Reports.

[37]  Nitesh V. Chawla,et al.  SMOTE: Synthetic Minority Over-sampling Technique , 2002, J. Artif. Intell. Res..

[38]  Linda G. Shapiro,et al.  Computer and Robot Vision , 1991 .

[39]  Milan Sonka,et al.  3D Slicer as an image computing platform for the Quantitative Imaging Network. , 2012, Magnetic resonance imaging.

[40]  Xiaoou Tang,et al.  Texture information in run-length matrices , 1998, IEEE Trans. Image Process..

[41]  Leen-Kiat Soh,et al.  Texture analysis of SAR sea ice imagery using gray level co-occurrence matrices , 1999, IEEE Trans. Geosci. Remote. Sens..

[42]  Paul Kinahan,et al.  Radiomics: Images Are More than Pictures, They Are Data , 2015, Radiology.

[43]  D. Rubin,et al.  Early-Stage Non-Small Cell Lung Cancer: Quantitative Imaging Characteristics of (18)F Fluorodeoxyglucose PET/CT Allow Prediction of Distant Metastasis. , 2016, Radiology.

[44]  P. Lambin,et al.  CT-based radiomic signature predicts distant metastasis in lung adenocarcinoma. , 2015, Radiotherapy and oncology : journal of the European Society for Therapeutic Radiology and Oncology.

[45]  John Moody,et al.  Fast Learning in Networks of Locally-Tuned Processing Units , 1989, Neural Computation.

[46]  Jinzhong Yang,et al.  IBEX: an open infrastructure software platform to facilitate collaborative work in radiomics. , 2015, Medical physics.