Exploring Electron/Proton Transfer and Conformational Changes in the Nitrogenase MoFe Protein and FeMo-cofactor Through Cryoreduction/EPR Measurements.

We combine cryoreduction/annealing/EPR measurements of nitrogenase MoFe protein with results of earlier investigations to provide a detailed view of the electron/proton transfer events and conformational changes that occur during early stages of [e-/H+] accumulation by the MoFe protein. This includes reduction of (i) the non-catalytic state of the iron-molybdenum cofactor (FeMo-co) active site that is generated by chemical oxidation of the resting-state cofactor (S = 3/2)) within resting MoFe (E0), and (ii) the catalytic state that has accumulated n =1 [e-/H+] above the resting-state level, denoted E1(1H) (S ≥ 1) in the Lowe-Thorneley kinetic scheme. FeMo-co does not undergo a major change of conformation during reduction of oxidized FeMo-co. In contrast, FeMo-co undergoes substantial conformational changes during the reduction of E0 to E1(1H), and of E1(1H) to E2(2H) (n = 2; S = 3/2). The experimental results further suggest that the E1(1H) → E2(2H) step involves coupled delivery of a proton and electron (PCET) to FeMo-co of E1(H) to generate a non-equilibrium S = ½ form E2(2H)*. This subsequently undergoes conformational relaxation and attendant change in FeMo-co spin state, to generate the equilibrium E2(2H) (S = 3/2) state. Unexpectedly, these experiments also reveal conformational coupling between FeMo-co and P-cluster, and between Fe protein binding and FeMo-co, which might play a role in gated ET from reduced Fe protein to FeMo-co.

[1]  L. Seefeldt,et al.  Identification of a key catalytic intermediate demonstrates that nitrogenase is activated by the reversible exchange of N₂ for H₂. , 2015, Journal of the American Chemical Society.

[2]  B. Hoffman,et al.  Electron Paramagnetic Resonance and Electron-Nuclear Double Resonance Studies of the Reactions of Cryogenerated Hydroperoxoferric–Hemoprotein Intermediates , 2014, Biochemistry.

[3]  David N. Beratan,et al.  Biochemistry and Theory of Proton-Coupled Electron Transfer , 2014, Chemical reviews.

[4]  L. Seefeldt,et al.  A Confirmation of the Quench-Cryoannealing Relaxation Protocol for Identifying Reduction States of Freeze-Trapped Nitrogenase Intermediates , 2014, Inorganic chemistry.

[5]  Dennis R. Dean,et al.  Mechanism of Nitrogen Fixation by Nitrogenase: The Next Stage , 2014, Chemical reviews.

[6]  I. Dance The stereochemistry and dynamics of the introduction of hydrogen atoms onto FeMo-co, the active site of nitrogenase. , 2013, Inorganic chemistry.

[7]  L. Seefeldt,et al.  Electron transfer precedes ATP hydrolysis during nitrogenase catalysis , 2013, Proceedings of the National Academy of Sciences.

[8]  L. Seefeldt,et al.  On reversible H2 loss upon N2 binding to FeMo-cofactor of nitrogenase , 2013, Proceedings of the National Academy of Sciences.

[9]  J. Peters,et al.  Catalytic conversion of nitrogen to ammonia by a molecular Fe model complex , 2013, Nature.

[10]  L. Seefeldt,et al.  Nitrogenase: a draft mechanism. , 2013, Accounts of chemical research.

[11]  L. Seefeldt,et al.  Temperature invariance of the nitrogenase electron transfer mechanism. , 2012, Biochemistry.

[12]  K. Rupnik,et al.  P+ state of nitrogenase p-cluster exhibits electronic structure of a [Fe4S4]+ cluster. , 2012, Journal of the American Chemical Society.

[13]  L. Seefeldt,et al.  Electron transfer in nitrogenase catalysis. , 2012, Current opinion in chemical biology.

[14]  L. Seefeldt,et al.  Unification of reaction pathway and kinetic scheme for N2 reduction catalyzed by nitrogenase , 2012, Proceedings of the National Academy of Sciences.

[15]  D. Rees,et al.  Evidence for Interstitial Carbon in Nitrogenase FeMo Cofactor , 2011, Science.

[16]  Frank Neese,et al.  X-ray Emission Spectroscopy Evidences a Central Carbon in the Nitrogenase Iron-Molybdenum Cofactor , 2011, Science.

[17]  L. Seefeldt,et al.  Electron transfer within nitrogenase: evidence for a deficit-spending mechanism. , 2011, Biochemistry.

[18]  B. Hoffman,et al.  Active intermediates in heme monooxygenase reactions as revealed by cryoreduction/annealing, EPR/ENDOR studies. , 2011, Archives of biochemistry and biophysics.

[19]  L. Seefeldt,et al.  Conformational gating of electron transfer from the nitrogenase Fe protein to MoFe protein. , 2010, Journal of the American Chemical Society.

[20]  L. Seefeldt,et al.  Is Mo involved in hydride binding by the four-electron reduced (E4) intermediate of the nitrogenase MoFe protein? , 2010, Journal of the American Chemical Society.

[21]  R. Griffin,et al.  Structure of the Nucleotide Radical Formed during Reaction of CDP/TTP with the E441Q-α2β2 of E. coli Ribonucleotide Reductase , 2008, Journal of the American Chemical Society.

[22]  B. Hoffman,et al.  EPR and ENDOR studies of Fe(II) hemoproteins reduced and oxidized at 77 K , 2008, JBIC Journal of Biological Inorganic Chemistry.

[23]  L. Seefeldt,et al.  Connecting nitrogenase intermediates with the kinetic scheme for N2 reduction by a relaxation protocol and identification of the N2 binding state , 2007, Proceedings of the National Academy of Sciences.

[24]  T. Rajh,et al.  Proton transfer at helium temperatures during dioxygen activation by heme monooxygenases. , 2004, Journal of the American Chemical Society.

[25]  R. Streatfeild,et al.  Enriching the Earth: Fritz Haber, Carl Bosch, and the Transformation of World Food Production , 2002 .

[26]  P. E. Wilson,et al.  Duplication and extension of the Thorneley and Lowe kinetic model for Klebsiella pneumoniae nitrogenase catalysis using a MATHEMATICA software platform. , 2001, Biophysical chemistry.

[27]  M. Durrant Controlled protonation of iron-molybdenum cofactor by nitrogenase: a structural and theoretical analysis. , 2001, The Biochemical journal.

[28]  K. Fisher,et al.  Electron paramagnetic resonance analysis of different Azotobacter vinelandii nitrogenase MoFe-protein conformations generated during enzyme turnover: evidence for S = 3/2 spin states from reduced MoFe-protein intermediates. , 2001, Biochemistry.

[29]  B. Burgess,et al.  Mössbauer Study of the MoFe Protein of Nitrogenase from Azotobacter vinelandii Using Selective 57Fe Enrichment of the M-Centers , 2000 .

[30]  W. Lanzilotta,et al.  Catalytic and biophysical properties of a nitrogenase Apo-MoFe protein produced by a nifB-deletion mutant of Azotobacter vinelandii. , 1998, Biochemistry.

[31]  B. Burgess,et al.  Mechanism of Molybdenum Nitrogenase. , 1996, Chemical reviews.

[32]  B. Hoffman,et al.  Q-Band Pulsed Electron Spin-Echo Spectrometer and Its Application to ENDOR and ESEEM , 1996 .

[33]  S. Cramer,et al.  FE AND MO EXAFS OF AZOTOBACTER VINELANDII NITROGENASE IN PARTIALLY OXIDIZED AND SINGLY REDUCED FORMS , 1995 .

[34]  R. Thorneley,et al.  The mechanism of Klebsiella pneumoniae nitrogenase action. Pre-steady-state kinetics of an enzyme-bound intermediate in N2 reduction and of NH3 formation. , 1984, The Biochemical journal.

[35]  James E. Roberts,et al.  Molybdenum-95 and proton ENDOR spectroscopy of the nitrogenase molybdenum-iron protein , 1982 .

[36]  M. O'Donnell,et al.  Electron-paramagnetic-resonance studies on the redox properties of the molybdenum-iron protein of nitrogenase between +50 and -450 mV. , 1978, The Biochemical journal.

[37]  R. Burris,et al.  Nitrogenase and nitrogenase reductase associate and dissociate with each catalytic cycle. , 1978, Proceedings of the National Academy of Sciences of the United States of America.

[38]  P. K. Glasoe,et al.  USE OF GLASS ELECTRODES TO MEASURE ACIDITIES IN DEUTERIUM OXIDE1,2 , 1960 .

[39]  Victor Guallar,et al.  Archives of Biochemistry and Biophysics , 1951, Nature.