Altered cholesterologenic and lipogenic transcriptional profile in livers of aging Snell dwarf (Pit1dw/dwJ) mice

Several murine models demonstrate that mammalian longevity can be increased by single gene mutations affecting endocrine signalling, particularly via the GH/IGF‐1 axis. In this study, we identify age‐independent patterns of hepatic gene expression characteristic of long‐lived Snell (Pit1dw/dwJ) dwarf mice. Comparative microarray analysis of young and aged male livers was performed to discover specific genes differentially expressed between Pit1dw/dwJ and control mice. Further examination by real‐time RT‐PCR confirmed that transcripts encoding HMG‐CoA synthase‐1, HMG‐CoA reductase, farnesyl diphosphate synthase, isopentenyl pyrophosphate isomerase, mevalonate decarboxylase, squalene epoxidase, lanosterol demethylase, malic enzyme and apolipoprotein A‐IV were significantly decreased in both male and female Pit1dw/dwJ livers at 3–5 and 24–28 months of age. In contrast, transcripts encoding the β3‐adrenergic receptor, lipoprotein lipase, PPARγ and a very low‐density lipoprotein receptor homologue were increased significantly in dwarf livers relative to age‐matched controls. These studies reveal enduring transcriptional changes characteristic of Pit1dw/dwJ dwarf mice that involve genes regulating cholesterol biosynthesis, fatty acid metabolism and lipoprotein homeostasis. Linked to global energy metabolism, this stable shift in hepatic gene expression may contribute to longevity determination by influencing particular metabolic functions often compartmentalized within the mitochondrion and peroxisome; further this metabolic shift may also parallel many transcriptional changes induced by caloric restriction.

[1]  J. Dhahbi,et al.  Genomic profiling of short- and long-term caloric restriction effects in the liver of aging mice , 2001, Proceedings of the National Academy of Sciences of the United States of America.

[2]  R. Tibshirani,et al.  Significance analysis of microarrays applied to the ionizing radiation response , 2001, Proceedings of the National Academy of Sciences of the United States of America.

[3]  J. Gordon,et al.  Enhanced Gluconeogenesis and Increased Energy Storage as Hallmarks of Aging in Saccharomyces cerevisiae * 210 , 2001, The Journal of Biological Chemistry.

[4]  P. Puigserver,et al.  Regulation of hepatic fasting response by PPARγ coactivator-1α (PGC-1): Requirement for hepatocyte nuclear factor 4α in gluconeogenesis , 2003, Proceedings of the National Academy of Sciences of the United States of America.

[5]  N. Lee,et al.  Gene expression profile of the aging process in rat liver: normalizing effects of growth hormone replacement. , 2001, Molecular endocrinology.

[6]  E. Hafen,et al.  Extension of Life-Span by Loss of CHICO, a Drosophila Insulin Receptor Substrate Protein , 2001, Science.

[7]  Raymond Y. N. Lee,et al.  Regulation of C. elegans DAF-16 and its human ortholog FKHRL1 by the daf-2 insulin-like signaling pathway , 2001, Current Biology.

[8]  A. Galecki,et al.  Gene expression profile of long-lived snell dwarf mice. , 2002, The journals of gerontology. Series A, Biological sciences and medical sciences.

[9]  Martin Holzenberger,et al.  IGF-1 receptor regulates lifespan and resistance to oxidative stress in mice , 2003, Nature.

[10]  Blanka Rogina,et al.  Longevity Regulation by Drosophila Rpd3 Deacetylase and Caloric Restriction , 2002, Science.

[11]  Guoying Liu,et al.  NetAffx: Affymetrix probesets and annotations , 2003, Nucleic Acids Res..

[12]  R. Evans,et al.  Peroxisome-Proliferator-Activated Receptor δ Activates Fat Metabolism to Prevent Obesity , 2003, Cell.

[13]  Ben Shneiderman,et al.  Optimizing signal / noise ratios in expression profiling : Project-specific algorithm selection and detection p value weighting in Affymetrix microarrays , 2004 .

[14]  R. Hammer,et al.  Activation of cholesterol synthesis in preference to fatty acid synthesis in liver and adipose tissue of transgenic mice overproducing sterol regulatory element-binding protein-2. , 1998, The Journal of clinical investigation.

[15]  F. Speleman,et al.  Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes , 2002, Genome Biology.

[16]  Matthias Blüher,et al.  Extended Longevity in Mice Lacking the Insulin Receptor in Adipose Tissue , 2003, Science.

[17]  R. Hammer,et al.  Diminished Hepatic Response to Fasting/Refeeding and Liver X Receptor Agonists in Mice with Selective Deficiency of Sterol Regulatory Element-binding Protein-1c* , 2002, The Journal of Biological Chemistry.

[18]  L. Guarente,et al.  Genetic pathways that regulate ageing in model organisms , 2000, Nature.

[19]  M. Bohlooly-y,et al.  Long-term growth hormone excess induces marked alterations in lipoprotein metabolism in mice. , 2001, American journal of physiology. Endocrinology and metabolism.

[20]  J. McElwee,et al.  Ageing: Microarraying mortality , 2003, Nature.

[21]  Richard Weindruch,et al.  Transcriptional profiles associated with aging and middle age-onset caloric restriction in mouse hearts , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[22]  E. Laurila,et al.  Growth hormone replacement therapy induces insulin resistance by activating the glucose-fatty acid cycle. , 2003, The Journal of clinical endocrinology and metabolism.

[23]  M. Lane,et al.  Convergence of peroxisome proliferator-activated receptor gamma and Foxo1 signaling pathways. , 2003, The Journal of biological chemistry.

[24]  Andrew G Fraser,et al.  Rates of Behavior and Aging Specified by Mitochondrial Function During Development , 2002, Science.

[25]  G. Dallner,et al.  Involvement of retinoid X receptor alpha in coenzyme Q metabolism. , 2003, Journal of molecular biology.

[26]  Genechip ® Expression Analysis Data Analysis Fundamentals Genechip ® Expression Analysis Chapter 4 First-order Data Analysis and Data Quality Assessment..................................... 27 Genechip ® Expression Analysis Affymetrix ® Netaffx Analysis of Promoter Sequences of Regulated Transcripts , 2022 .

[27]  E. Hafen,et al.  Dietary Restriction in Long-Lived Dwarf Flies , 2002, Science.

[28]  D. Mangelsdorf,et al.  Orphan Nuclear Receptors as eLiXiRs and FiXeRs of Sterol Metabolism* , 2001, The Journal of Biological Chemistry.

[29]  M. Lane,et al.  Convergence of Peroxisome Proliferator-activated Receptor γ and Foxo1 Signaling Pathways* , 2003, Journal of Biological Chemistry.

[30]  T. Osborne,et al.  Thyroid Hormone Regulation and Cholesterol Metabolism Are Connected through Sterol Regulatory Element-binding Protein-2 (SREBP-2)* , 2003, Journal of Biological Chemistry.

[31]  Jay D. Horton,et al.  Combined analysis of oligonucleotide microarray data from transgenic and knockout mice identifies direct SREBP target genes , 2003, Proceedings of the National Academy of Sciences of the United States of America.

[32]  G. Horgan,et al.  Relative expression software tool (REST©) for group-wise comparison and statistical analysis of relative expression results in real-time PCR , 2002 .

[33]  M. Tatar,et al.  The Endocrine Regulation of Aging by Insulin-like Signals , 2003, Science.

[34]  C. K. Lee,et al.  Microarray profiling of gene expression in aging and its alteration by caloric restriction in mice. , 2001, The Journal of nutrition.

[35]  A. Bird,et al.  Epigenetic regulation of gene expression: how the genome integrates intrinsic and environmental signals , 2003, Nature Genetics.

[36]  D. Ingram,et al.  Biomarkers of Caloric Restriction May Predict Longevity in Humans , 2002, Science.

[37]  R. Miller,et al.  Array-based expression analysis of mouse liver genes: effect of age and of the longevity mutant Prop1df. , 2001, The journals of gerontology. Series A, Biological sciences and medical sciences.

[38]  Ben Shneiderman,et al.  Interactively optimizing signal-to-noise ratios in expression profiling: project-specific algorithm selection and detection p-value weighting in Affymetrix microarrays , 2004, Bioinform..

[39]  D. Mangelsdorf,et al.  Activation of liver X receptor improves glucose tolerance through coordinate regulation of glucose metabolism in liver and adipose tissue , 2003, Proceedings of the National Academy of Sciences of the United States of America.

[40]  F. Foufelle,et al.  New perspectives in the regulation of hepatic glycolytic and lipogenic genes by insulin and glucose: a role for the transcription factor sterol regulatory element binding protein-1c. , 2002, The Biochemical journal.

[41]  C. Glass,et al.  Conditional Disruption of the Peroxisome Proliferator-Activated Receptor γ Gene in Mice Results in Lowered Expression of ABCA1, ABCG1, and apoE in Macrophages and Reduced Cholesterol Efflux , 2002, Molecular and Cellular Biology.

[42]  Richard A. Miller,et al.  Lifespan extension and delayed immune and collagen aging in mutant mice with defects in growth hormone production , 2001, Proceedings of the National Academy of Sciences of the United States of America.

[43]  A. Salmon,et al.  Multiplex stress resistance in cells from long‐lived dwarf mice , 2003, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.

[44]  Y. Wan,et al.  Involvement of Retinoid X Receptor α in Coenzyme Q Metabolism , 2003 .

[45]  Jiandie D. Lin,et al.  PGC-1β in the Regulation of Hepatic Glucose and Energy Metabolism* , 2003, Journal of Biological Chemistry.

[46]  Amy N Holland,et al.  Deletion, but not antagonism, of the mouse growth hormone receptor results in severely decreased body weights, insulin, and insulin-like growth factor I levels and increased life span. , 2003, Endocrinology.

[47]  David B. Goldstein,et al.  Genome-Wide Transcript Profiles in Aging and Calorically Restricted Drosophila melanogaster , 2002, Current Biology.

[48]  M. Pfaffl,et al.  A new mathematical model for relative quantification in real-time RT-PCR. , 2001, Nucleic acids research.

[49]  J. Gustafsson,et al.  Liver X Receptors as Insulin-mediating Factors in Fatty Acid and Cholesterol Biosynthesis* , 2002, The Journal of Biological Chemistry.

[50]  R. Zechner,et al.  Lipoprotein lipase: the regulation of tissue specific expression and its role in lipid and energy metabolism , 2002, Current opinion in lipidology.

[51]  R. Evans,et al.  Peroxisome-proliferator-activated receptor delta activates fat metabolism to prevent obesity. , 2003, Cell.

[52]  Siegfried Hekimi,et al.  Genetics and the Specificity of the Aging Process , 2003, Science.

[53]  W. V. Van Voorhies Metabolism and aging in the nematode Caenorhabditis elegans. , 2002, Free radical biology & medicine.

[54]  Jiandie D. Lin,et al.  PGC-1beta in the regulation of hepatic glucose and energy metabolism. , 2003, The Journal of biological chemistry.

[55]  T. Furuyama,et al.  Effects of aging and caloric restriction on the gene expression of Foxo1, 3, and 4 (FKHR, FKHRL1, and AFX) in the rat skeletal muscles , 2002, Microscopy research and technique.

[56]  A. Galecki,et al.  Gene expression patterns in calorically restricted mice: partial overlap with long-lived mutant mice. , 2002, Molecular endocrinology.

[57]  J. Parks,et al.  Heritable disorders of pituitary development. , 1999, The Journal of clinical endocrinology and metabolism.

[58]  L. Guarente,et al.  Molecular Biology of Aging , 1999, Cell.

[59]  T. Aigaki,et al.  Longevity determination genes in Drosophila melanogaster , 2002, Mechanisms of Ageing and Development.

[60]  D. Clemmons,et al.  Assessment of growth parameters and life span of GHR/BP gene-disrupted mice. , 2000, Endocrinology.

[61]  R. Hammer,et al.  SREBP cleavage-activating protein (SCAP) is required for increased lipid synthesis in liver induced by cholesterol deprivation and insulin elevation. , 2001, Genes & development.

[62]  B. Brewer,et al.  Liver-specific disruption of PPARgamma in leptin-deficient mice improves fatty liver but aggravates diabetic phenotypes. , 2003, The Journal of clinical investigation.

[63]  W. V. Van Voorhies The influence of metabolic rate on longevity in the nematode Caenorhabditis elegans * , 2002, Aging cell.

[64]  C. Finch,et al.  Evolutionary Medicine: From Dwarf Model Systems to Healthy Centenarians? , 2003, Science.

[65]  Boheler Kr,et al.  Aging-associated changes in cardiac gene expression: large scale transcriptome analysis. , 2003, Advances in gerontology = Uspekhi gerontologii.

[66]  D B Allison,et al.  Influences of aging and caloric restriction on the transcriptional profile of skeletal muscle from rhesus monkeys , 2001, Proceedings of the National Academy of Sciences of the United States of America.

[67]  R. Hammer,et al.  Overexpression of Insig-1 in the livers of transgenic mice inhibits SREBP processing and reduces insulin-stimulated lipogenesis. , 2004, The Journal of clinical investigation.

[68]  Gary Ruvkun,et al.  A systematic RNAi screen identifies a critical role for mitochondria in C. elegans longevity , 2003, Nature Genetics.

[69]  Joseph L Goldstein,et al.  SREBPs: activators of the complete program of cholesterol and fatty acid synthesis in the liver. , 2002, The Journal of clinical investigation.

[70]  B. Merry Molecular mechanisms linking calorie restriction and longevity. , 2002, The international journal of biochemistry & cell biology.

[71]  T. Prolla DNA microarray analysis of the aging brain. , 2002, Chemical senses.

[72]  M. Bohlooly-y,et al.  Bovine growth hormone-transgenic mice have major alterations in hepatic expression of metabolic genes. , 2003, American journal of physiology. Endocrinology and metabolism.

[73]  Peter Olson,et al.  Printed in U.S.A. Copyright © 2003 by The Endocrine Society doi: 10.1210/en.2003-0288 Minireview: Lipid Metabolism, Metabolic Diseases, and , 2022 .

[74]  I. Shimomura,et al.  Insulin selectively increases SREBP-1c mRNA in the livers of rats with streptozotocin-induced diabetes. , 1999, Proceedings of the National Academy of Sciences of the United States of America.

[75]  J. Breslow,et al.  Novel putative SREBP and LXR target genes identified by microarray analysis in liver of cholesterol-fed mices⃞s⃞ The online version of this article (available at http://www.jlr.org) contains one supplemental table. Published, JLR Papers in Press, August 1, 2003. DOI 10.1194/jlr.M300203-JLR200 , 2003, Journal of Lipid Research.

[76]  K. Nair,et al.  Effects of caloric restriction on mitochondrial function and gene transcripts in rat muscle. , 2002, American journal of physiology. Endocrinology and metabolism.

[77]  F. Casas,et al.  A 45 kDa protein related to PPARγ2, induced by peroxisome proliferators, is located in the mitochondrial matrix , 2000, FEBS letters.

[78]  Cori Bargmann,et al.  Genes that act downstream of DAF-16 to influence the lifespan of Caenorhabditis elegans , 2003, Nature.

[79]  P. Puigserver,et al.  Regulation of hepatic fasting response by PPARgamma coactivator-1alpha (PGC-1): requirement for hepatocyte nuclear factor 4alpha in gluconeogenesis. , 2003, Proceedings of the National Academy of Sciences of the United States of America.

[80]  B. Rogina,et al.  Functional characterization and immunolocalization of the transporter encoded by the life-extending gene Indy , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[81]  C. Clarke,et al.  Extension of Life-Span in Caenorhabditis elegans by a Diet Lacking Coenzyme Q , 2002, Science.