A small metalloribozyme with a two-step mechanism

An RNA molecule consisting of an asymmetric internal loop of six nucleotides can be rapidly and specifically cleaved by Pb2+ in the presence of Mg2+. The 5′ cleavage product terminates with a 3′ phosphomonoester generated from a 2′,3′-cyclic phosphodiester reaction intermediate. This two-step reaction mechanism resembles that of many protein ribonucleases but has not previously been observed for reactions catalysed by RNA.

[1]  M. Sundaralingam,et al.  Lead ion binding and RNA chain hydrolysis in phenylalanine tRNA. , 1983, Journal of biomolecular structure & dynamics.

[2]  A Klug,et al.  Crystallographic and biochemical investigation of the lead(II)-catalyzed hydrolysis of yeast phenylalanine tRNA. , 1985, Biochemistry.

[3]  A. T. Perrotta,et al.  Cleavage of oligoribonucleotides by a ribozyme derived from the hepatitis delta virus RNA sequence. , 1992, Biochemistry.

[4]  T. Cech The chemistry of self-splicing RNA and RNA enzymes. , 1987, Science.

[5]  W. Farkas Depolymerization of ribonucleic acid by plumbous ion. , 1968, Biochimica et biophysica acta.

[6]  O. Uhlenbeck,et al.  Synthesis of small RNAs using T7 RNA polymerase. , 1989, Methods in enzymology.

[7]  Norman R. Pace,et al.  Ribonuclease P: function and variation. , 1990, The Journal of biological chemistry.

[8]  Anthony C. Forster,et al.  Self-cleavage of virusoid RNA is performed by the proposed 55-nucleotide active site , 1987, Cell.

[9]  O. Uhlenbeck A small catalytic oligoribonucleotide , 1987, Nature.

[10]  M. Sundaralingam,et al.  Nonenzymatic hydrolysis of RNA: Pb(II)‐catalyzed site specific hydrolysis of transfer RNA. The role of the tertiary folding of the polynucleotide chain , 1984 .

[11]  O. Uhlenbeck,et al.  Role of divalent metal ions in the hammerhead RNA cleavage reaction. , 1991, Biochemistry.

[12]  O. Uhlenbeck,et al.  Lead-catalyzed cleavage of yeast tRNAPhe mutants. , 1990, Biochemistry.

[13]  A. Klug,et al.  Pb(II)-catalysed cleavage of the sugar–phosphate backbone of yeast tRNAPhe—implications for lead toxicity and self-splicing RNA , 1983, Nature.

[14]  J. M. Buzayan,et al.  Autolytic Processing of Dimeric Plant Virus Satellite RNA , 1986, Science.

[15]  O. Uhlenbeck,et al.  In vitro selection of RNAs that undergo autolytic cleavage with Pb2+. , 1992, Biochemistry.

[16]  A proton-coupled conformational switch of Escherichia coli 5S ribosomal RNA. , 1980, Proceedings of the National Academy of Sciences of the United States of America.

[17]  T. Cech,et al.  Biological catalysis by RNA. , 1986, Annual review of biochemistry.

[18]  T. Cech Self-splicing of group I introns. , 1990, Annual review of biochemistry.