Enhancement of charged macromolecule capture by nanopores in a salt gradient.

Nanopores spanning synthetic membranes have been used as key components in proof-of-principle nanofluidic applications, particularly those involving manipulation of biomolecules or sequencing of DNA. The only practical way of manipulating charged macromolecules near nanopores is through a voltage difference applied across the nanopore-spanning membrane. However, recent experiments have shown that salt concentration gradients applied across nanopores can also dramatically enhance charged particle capture from a low concentration reservoir of charged molecules at one end of the nanopore. This puzzling effect has hitherto eluded a physically consistent theoretical explanation. Here, we propose an electrokinetic mechanism of this enhanced capture that relies on the electrostatic potential near the pore mouth. For long pores with diameter much greater than the local screening length, we obtain accurate analytic expressions showing how salt gradients control the local conductivity which can lead to increased local electrostatic potentials and charged analyte capture rates. We also find that the attractive electrostatic potential may be balanced by an outward, repulsive electro-osmotic flow that can in certain cases conspire with the salt gradient to further enhance the analyte capture rate.

[1]  B. Schiedt,et al.  A Poisson/Nernst-Planck model for ionic transport through synthetic conical nanopores , 2005 .

[2]  H. Bayley,et al.  Capture of a single molecule in a nanocavity. , 2001, Science.

[3]  J. Joanny,et al.  Fast DNA translocation through a solid-state nanopore. , 2004, Nano letters.

[4]  H. Bayley,et al.  Enhanced translocation of single DNA molecules through α-hemolysin nanopores by manipulation of internal charge , 2008, Proceedings of the National Academy of Sciences.

[5]  H. Bayley,et al.  Electroosmotic enhancement of the binding of a neutral molecule to a transmembrane pore , 2003, Proceedings of the National Academy of Sciences of the United States of America.

[6]  Tom Chou,et al.  Multistage adsorption of diffusing macromolecules and viruses. , 2007, The Journal of chemical physics.

[7]  J. Lear,et al.  Permeation through an open channel: Poisson-Nernst-Planck theory of a synthetic ionic channel. , 1997, Biophysical journal.

[8]  Marc Gershow,et al.  Recapturing and trapping single molecules with a solid-state nanopore. , 2007, Nature nanotechnology.

[9]  Andre Marziali,et al.  Noise analysis and reduction in solid-state nanopores , 2007 .

[10]  Ji Feng,et al.  Analysis of electroosmotic flow with linear variable zeta potential , 2005, 2005 International Conference on MEMS,NANO and Smart Systems.

[11]  T. Chou,et al.  First passage times of driven DNA hairpin unzipping , 2005, Physical biology.

[12]  J Norbury,et al.  Singular perturbation analysis of the steady-state Poisson–Nernst–Planck system: Applications to ion channels , 2008, European Journal of Applied Mathematics.

[13]  John L. Anderson,et al.  ELECTROOSMOSIS THROUGH PORES WITH NONUNIFORMLY CHARGED WALLS , 1985 .

[14]  How long does it take to pull an ideal polymer into a small hole? , 2005, Physical review letters.

[15]  E. Trizac,et al.  Effective charge versus bare charge: an analytical estimate for colloids in the infinite dilution limit , 2003, cond-mat/0301061.

[16]  S. Weinbaum,et al.  An infinite-series solution for the creeping motion through an orifice of finite length , 1982, Journal of Fluid Mechanics.

[17]  R. B. Kelman STEADY-STATE DIFFUSION THROUGH A FINITE PORE INTO AN INFINITE RESERVOIR: AN EXACT SOLUTION. , 1965, The Bulletin of mathematical biophysics.

[18]  Aleksei Aksimentiev,et al.  Beyond the gene chip , 2005, Bell Labs Technical Journal.

[19]  T. Kenny,et al.  Electroosmotic capillary flow with nonuniform zeta potential , 2000, Analytical Chemistry.

[20]  Steven B. Smith,et al.  Electrophoretic charge density and persistence length of DNA as measured by fluorescence microscopy , 1990, Biopolymers.

[21]  Axisymmetric creeping flow from an orifice in a plane wall , 1965 .

[22]  Donald A. McQuarrie,et al.  Electrokinetic flow in a narrow cylindrical capillary , 1980 .

[23]  G. Ariel,et al.  Kinetics of surfactant adsorption: the free energy approach , 2001 .

[24]  M. Muthukumar,et al.  Polymer capture by electro-osmotic flow of oppositely charged nanopores. , 2007, The Journal of chemical physics.

[25]  R. Eisenberg,et al.  Constant fields and constant gradients in open ionic channels. , 1992, Biophysical journal.

[26]  P. Whitman,et al.  Comparison of the Surface Charge Behavior of Commercial Silicon Nitride and Silicon Carbide Powders , 1988 .

[27]  K. Schulten,et al.  Microscopic Kinetics of DNA Translocation through synthetic nanopores. , 2004, Biophysical journal.

[28]  J. Klafter,et al.  Single stranded DNA translocation through a nanopore: a master equation approach. , 2003, Physical review. E, Statistical, nonlinear, and soft matter physics.

[29]  Polymer translocation induced by adsorption , 1998, cond-mat/9802100.