Standards not that standard

There is a general assent on the key role of standards in Synthetic Biology. In two consecutive letters to this journal, suggestions on the assembly methods for the Registry of standard biological parts have been described. We fully agree with those authors on the need of a more flexible building strategy and we highlight in the present work two major functional challenges standardization efforts have to deal with: the need of both universal and orthogonal behaviors. We provide experimental data that clearly indicate that such engineering requirements should not be taken for granted in Synthetic Biology.

[1]  V. Lorenzo,et al.  Deconvolution of gene expression noise into physical dynamics of cognate promoters , 2015, bioRxiv.

[2]  Manuel Porcar,et al.  iGEM 2.0—refoundations for engineering biology , 2014, Nature Biotechnology.

[3]  G. Stan,et al.  Quantifying cellular capacity identifies gene expression designs with reduced burden , 2015, Nature Methods.

[4]  Weston R. Whitaker,et al.  Toward scalable parts families for predictable design of biological circuits. , 2008, Current opinion in microbiology.

[5]  D. Ussery,et al.  Comparison of 61 Sequenced Escherichia coli Genomes , 2010, Microbial Ecology.

[6]  Y. Kim,et al.  Comparison of green fluorescent protein expression in two industrial Escherichia coli strains, BL21 and W3110, under co-expression of bacterial hemoglobin , 2002, Applied Microbiology and Biotechnology.

[7]  S. E. Reece,et al.  Adaptive noise , 2013, Proceedings of the Royal Society B: Biological Sciences.

[8]  Erwin Frey,et al.  High Variation of Fluorescence Protein Maturation Times in Closely Related Escherichia coli Strains , 2013, PloS one.

[9]  Susanna Zucca,et al.  Bottom-Up Engineering of Biological Systems through Standard Bricks: A Modularity Study on Basic Parts and Devices , 2012, PloS one.

[10]  Ben Slater,et al.  The case for decoupling assembly and submission standards to maintain a more flexible registry of biological parts , 2014, Journal of biological engineering.

[11]  Mads Kærn,et al.  No training required: experimental tests support homology-based DNA assembly as a best practice in synthetic biology , 2015, Journal of biological engineering.