A biosystem for alginate metabolism in Agrobacterium tumefaciens strain C58: molecular identification of Atu3025 as an exotype family PL-15 alginate lyase.

[1]  B. Mikami,et al.  Proteomics-based identification of outer-membrane proteins responsible for import of macromolecules in Sphingomonas sp. A1: alginate-binding flagellin on the cell surface. , 2005, Biochemistry.

[2]  B. Mikami,et al.  A structural basis for depolymerization of alginate by polysaccharide lyase family-7. , 2005, Journal of molecular biology.

[3]  Wataru Hashimoto,et al.  Molecular identification and characterization of an alginate-binding protein on the cell surface of Sphingomonas sp. A1. , 2004, Biochemical and biophysical research communications.

[4]  B. Mikami,et al.  Structure and Function of a Hypothetical Pseudomonas aeruginosa Protein PA1167 Classified into Family PL-7 , 2004, Journal of Biological Chemistry.

[5]  K. Murata,et al.  Origin and Diversity of Alginate Lyases of Families PL-5 and -7 in Sphingomonas sp. Strain A1 , 2004, Journal of bacteriology.

[6]  T. Ojima,et al.  cDNA cloning of an alginate lyase from abalone, Haliotis discus hannai. , 2003, Carbohydrate research.

[7]  S. Gelvin Agrobacterium-Mediated Plant Transformation: the Biology behind the “Gene-Jockeying” Tool , 2003, Microbiology and Molecular Biology Reviews.

[8]  B. Mikami,et al.  Crystal Structure of AlgQ2, a Macromolecule (Alginate)-binding Protein of Sphingomonas sp. A1, Complexed with an Alginate Tetrasaccharide at 1.6-Å Resolution* , 2003, The Journal of Biological Chemistry.

[9]  K. Murata,et al.  Biodegradation of Alginate, Xanthan, and Gellan , 2002 .

[10]  M. Lascombe,et al.  Atomic (0.94 A) resolution structure of an inverting glycosidase in complex with substrate. , 2002, Journal of molecular biology.

[11]  B. Mikami,et al.  Crystal structure of AlgQ2, a macromolecule (alginate)-binding protein of Sphingomonas sp. A1 at 2.0A resolution. , 2002, Journal of molecular biology.

[12]  J A Eisen,et al.  The Genome of the Natural Genetic Engineer Agrobacterium tumefaciens C58 , 2001, Science.

[13]  B. Mikami,et al.  Super-channel in bacteria: function and structure of a macromolecule import system mediated by a pit-dependent ABC transporter. , 2001, Bioscience, biotechnology, and biochemistry.

[14]  B. Mikami,et al.  Crystal structure of alginate lyase A1-III complexed with trisaccharide product at 2.0 A resolution. , 2001, Journal of molecular biology.

[15]  J. Sambrook,et al.  Molecular Cloning: A Laboratory Manual , 2001 .

[16]  T. Yamada,et al.  Algal-lytic activities encoded by Chlorella virus CVK2. , 2000, Virology.

[17]  S. Kawai,et al.  Molecular Identification of Oligoalginate Lyase ofSphingomonas sp. Strain A1 as One of the Enzymes Required for Complete Depolymerization of Alginate , 2000, Journal of bacteriology.

[18]  K. Murata,et al.  A Novel Bacterial ATP-Binding Cassette Transporter System That Allows Uptake of Macromolecules , 2000, Journal of bacteriology.

[19]  B. Mikami,et al.  Overexpression in Escherichia coli, purification, and characterization of Sphingomonas sp. A1 alginate lyases. , 2000, Protein expression and purification.

[20]  H. Unno,et al.  Evidence for a novel Chlorella virus-encoded alginate lyase. , 1999, FEMS microbiology letters.

[21]  B. Mikami,et al.  Crystal structure of alginate lyase A1-III from Sphingomonas species A1 at 1.78 A resolution. , 1999, Journal of molecular biology.

[22]  K. Linton,et al.  The Escherichia coli ATP‐binding cassette (ABC) proteins , 1998, Molecular microbiology.

[23]  K. Murata,et al.  Pit structure on bacterial cell surface. , 1996, Biochemical and biophysical research communications.

[24]  H. Kumagai,et al.  Effect of site-directed mutations on processing and activity of gamma-glutamyltranspeptidase of Escherichia coli K-12. , 1995, Journal of biochemistry.

[25]  F. Sanger,et al.  DNA sequencing with chain-terminating inhibitors. , 1977, Proceedings of the National Academy of Sciences of the United States of America.

[26]  M. M. Bradford A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. , 1976, Analytical biochemistry.

[27]  M. Chilton,et al.  Agrobacterium tumefaciens DNA and PS8 bacteriophage DNA not detected in crown gall tumors. , 1974, Proceedings of the National Academy of Sciences of the United States of America.

[28]  O. Smidsrod,et al.  Uronic acid sequence in alginate from different sources , 1974 .

[29]  U. K. Laemmli,et al.  Cleavage of Structural Proteins during the Assembly of the Head of Bacteriophage T4 , 1970, Nature.

[30]  L. Warren Thiobarbituric Acid Spray Reagent for Deoxy Sugars and Sialic Acids , 1960, Nature.

[31]  J. Hurwitz,et al.  The formation of 2-keto-3-deoxyheptonic acid in extracts of Escherichia coli B. I. Identification. , 1959, The Journal of biological chemistry.

[32]  J. Hurwitz,et al.  The formation of 2-keto-3-deoxyheptonic acid in extracts of Escherichia coli B. II. Enzymic studies. , 1959, The Journal of biological chemistry.

[33]  K. Murata,et al.  Molecular identification of Sphingomonas sp. A1 alginate lyase (A1-IV') as a member of novel polysaccharide lyase family 15 and implications in alginate lyase evolution. , 2005, Journal of bioscience and bioengineering.

[34]  B. Mikami,et al.  Super-channel in bacteria: structural and functional aspects of a novel biosystem for the import and depolymerization of macromolecules. , 2004, Journal of bioscience and bioengineering.

[35]  N. Schiller,et al.  ALGINATE LYASE: review of major sources and enzyme characteristics, structure-function analysis, biological roles, and applications. , 2000, Annual review of microbiology.

[36]  K. Murata,et al.  Sphingomonas sp. A1 lyase active on both poly-β-d-mannuronate and heteropolymeric regions in alginate , 1998 .

[37]  K. Murata,et al.  On the self-processing of bacterial alginate lyase , 1994 .