MicroRNA and mRNA integrated analysis (MMIA): a web tool for examining biological functions of microRNA expression
暂无分享,去创建一个
Curtis Balch | Kenneth P. Nephew | Meng Li | Seungyoon Nam | Sun Kim | Kwangmin Choi | Meng Li | K. Nephew | C. Balch | S. Nam | Sun Kim | Kwangmin Choi
[1] Tongbin Li,et al. miRecords: an integrated resource for microRNA–target interactions , 2008, Nucleic Acids Res..
[2] Korbinian Strimmer,et al. fdrtool: a versatile R package for estimating local and tail area-based false discovery rates , 2008, Bioinform..
[3] T. Gambichler,et al. MicroRNAs and the skin: tiny players in the body's largest organ. , 2009, Journal of dermatological science.
[4] E. Sontheimer,et al. Origins and Mechanisms of miRNAs and siRNAs , 2009, Cell.
[5] D. Bartel. MicroRNAs: Target Recognition and Regulatory Functions , 2009, Cell.
[6] Haifan Lin,et al. MicroRNAs: key regulators of stem cells , 2009, Nature Reviews Molecular Cell Biology.
[7] Yi-Hsuan Chen,et al. miRNAMap 2.0: genomic maps of microRNAs in metazoan genomes , 2007, Nucleic Acids Res..
[8] Seon-Young Kim,et al. Gene-set approach for expression pattern analysis , 2008, Briefings Bioinform..
[9] L. Lim,et al. MicroRNA targeting specificity in mammals: determinants beyond seed pairing. , 2007, Molecular cell.
[10] T. Barrette,et al. Oncomine 3.0: genes, pathways, and networks in a collection of 18,000 cancer gene expression profiles. , 2007, Neoplasia.
[11] Yadong Wang,et al. miR2Disease: a manually curated database for microRNA deregulation in human disease , 2008, Nucleic Acids Res..
[12] K. Gunsalus,et al. Combinatorial microRNA target predictions , 2005, Nature Genetics.
[13] F. Lyko,et al. Methylation of Human MicroRNA Genes in Normal and Neoplastic Cells , 2007, Cell cycle.
[14] Sanghyuk Lee,et al. miRGator: an integrated system for functional annotation of microRNAs , 2007, Nucleic Acids Res..
[15] Sam Richman,et al. An online database for brain disease research , 2006, BMC Genomics.
[16] C. Burge,et al. Conserved Seed Pairing, Often Flanked by Adenosines, Indicates that Thousands of Human Genes are MicroRNA Targets , 2005, Cell.
[17] S. Ropero,et al. A microRNA DNA methylation signature for human cancer metastasis , 2008, Proceedings of the National Academy of Sciences.
[18] J. Keller,et al. RNA in Brain Disease: No Longer Just "The Messenger in the Middle" , 2007, Journal of neuropathology and experimental neurology.
[19] Vijay G Divakaran,et al. The Emerging Role of MicroRNAs in Cardiac Remodeling and Heart Failure , 2008, Circulation research.
[20] R. Pillai. MicroRNA function: multiple mechanisms for a tiny RNA? , 2005, RNA.
[21] A. Hatzigeorgiou,et al. TarBase: A comprehensive database of experimentally supported animal microRNA targets. , 2005, RNA.
[22] C. Croce,et al. Human microRNA genes are frequently located at fragile sites and genomic regions involved in cancers. , 2004, Proceedings of the National Academy of Sciences of the United States of America.
[23] Terrence S. Furey,et al. The UCSC Genome Browser Database , 2003, Nucleic Acids Res..
[24] Michael Kertesz,et al. The role of site accessibility in microRNA target recognition , 2007, Nature Genetics.
[25] M. Levine,et al. Spatial regulation of microRNA gene expression in the Drosophila embryo. , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[26] Walter J. Lukiw,et al. An NF-κB-sensitive Micro RNA-146a-mediated Inflammatory Circuit in Alzheimer Disease and in Stressed Human Brain Cells* , 2008, Journal of Biological Chemistry.
[27] F. Slack,et al. Oncomirs — microRNAs with a role in cancer , 2006, Nature Reviews Cancer.
[28] David Haussler,et al. The UCSC Known Genes , 2006, Bioinform..
[29] Pablo Tamayo,et al. Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[30] I. Plante,et al. MicroRNA-298 and MicroRNA-328 Regulate Expression of Mouse β-Amyloid Precursor Protein-converting Enzyme 1* , 2009, Journal of Biological Chemistry.
[31] R. Siebert,et al. Epigenetic regulation of microRNAs in acute lymphoblastic leukemia. , 2009, Journal of clinical oncology : official journal of the American Society of Clinical Oncology.
[32] Susumu Goto,et al. The KEGG resource for deciphering the genome , 2004, Nucleic Acids Res..
[33] Yuriy Gusev,et al. Computational methods for analysis of cellular functions and pathways collectively targeted by differentially expressed microRNA. , 2008, Methods.
[34] Christiane Haffner,et al. miRNAs are essential for survival and differentiation of newborn neurons but not for expansion of neural progenitors during early neurogenesis in the mouse embryonic neocortex , 2008, Development.
[35] Klaus Rajewsky,et al. MicroRNA Control in the Immune System: Basic Principles , 2009, Cell.
[36] N. S. Asli,et al. MicroRNAs in organogenesis and disease. , 2008, Current molecular medicine.
[37] Martin M Matzuk,et al. A bioinformatics tool for linking gene expression profiling results with public databases of microRNA target predictions. , 2008, RNA.
[38] W. Filipowicz,et al. Mechanisms of post-transcriptional regulation by microRNAs: are the answers in sight? , 2008, Nature Reviews Genetics.
[39] Megan F. Cole,et al. Connecting microRNA Genes to the Core Transcriptional Regulatory Circuitry of Embryonic Stem Cells , 2008, Cell.
[40] A. O. Chiromatzo,et al. miRNApath: a database of miRNAs, target genes and metabolic pathways. , 2007, Genetics and molecular research : GMR.
[41] Sun Mi Park,et al. MicroRNAs: key players in the immune system, differentiation, tumorigenesis and cell death , 2008, Oncogene.
[42] Yunlong Liu,et al. Computational analysis of microRNA profiles and their target genes suggests significant involvement in breast cancer antiestrogen resistance , 2009, Bioinform..