Unequal torsional rotations driven by normal to modulated phase transition in 4-biphenylcarboxy coupled L-phenylalaninate governed by non-covalent constraints

Amongst the derivatives of 4-biphenylcarboxylic acid and amino acid esters, the crystal structure of 4-biphenylcarboxy-(L)-phenylalaninate is unusual owing to its monoclinic symmetry within a pseudo-orthorhombic lattice. The distortion is described by disparate rotational property around the chiral centers ( ϕ chiral ’ -129 degrees and 58 degrees) of the two molecules in the asymmetric unit. Each of these molecules comprise of planar biphenyl moieties ( ϕ biphenyl = 0 degrees). Using temperature dependent single crystal X-ray diffraction experiments we show that the compound undergoes a phase transition below T ∼ 124 K that is characterized by a commensurate modulation wave vector, q = δ (101), δ = 12 . The (3+1) dimensional modulated structure at T = 100 K suggests that the phase transition drives the biphenyl moieties towards non coplanar conformations with significant variation of internal torsion ( ϕ maxbiphenyl ≤ 20 degrees). These intramolecular rotations lead to dimerization of the molecular stacks that are described predominantly by intermolecular tilts and small variations in intermolecular distances. Atypical of modulated structures and superstructures of biphenyl and other polyphenyls, ϕ biphenyl of one independent molecule is two to four times larger than the other. We suggest that while the rotations arise from intramolecular steric factors, competing intermolecular H–C ··· C–H contacts and weak C–H ··· O hydrogen bonds govern the distinctively unequal torsional property of the molecules.

[1]  W. Morgenroth,et al.  Incommensurate Phase in Λ‐cobalt (III) Sepulchrate Trinitrate Governed by Highly Competitive N−H⋅⋅⋅O and C−H⋅⋅⋅O Hydrogen Bond Networks , 2021, Chemistry.

[2]  C. Paulmann,et al.  Toward Understanding High-Z′ Organic Molecular Crystals through the Superspace Method: The Example of Glycyl-l-valine , 2021 .

[3]  S. Sahoo,et al.  Anisotropic charge transport and optoelectronic properties of wide band gap organic semiconductors based on biphenyl derivatives: A computational study , 2020 .

[4]  Hyunhak Jeong,et al.  An On‐Chip Break Junction System for Combined Single‐Molecule Conductance and Raman Spectroscopies , 2020, Advanced Functional Materials.

[5]  S. Nandi,et al.  Atomic‐Level Insight of self‐assembled Nanorods from 4‐Biphenylcarboxy Protected L‐Phenylalanine , 2019, ChemistrySelect.

[6]  Debasish Podder,et al.  Assembly‐Induced Diverse Optical Property of 4‐Biphenylcarboxy‐Protected Serine and Tyrosine , 2019, ChemistrySelect.

[7]  M. Nespolo The chromatic symmetry of twins and allotwins. , 2019, Acta crystallographica. Section A, Foundations and advances.

[8]  Joseph C. R. Thacker,et al.  A relative energy gradient (REG) study of the planar and perpendicular torsional energy barriers in biphenyl , 2018, Theoretical Chemistry Accounts.

[9]  Yuanping Yi,et al.  Induction of Strong Long-Lived Room-Temperature Phosphorescence of N-Phenyl-2-naphthylamine Molecules by Confinement in a Crystalline Dibromobiphenyl Matrix. , 2016, Angewandte Chemie.

[10]  Somnath Dey,et al.  The Z′ = 12 superstructure of Λ-cobalt(III) sepulchrate trinitrate governed by C—H⋯O hydrogen bonds , 2016, Acta crystallographica Section B, Structural science, crystal engineering and materials.

[11]  V. Petříček,et al.  Crystallographic computing system Jana2006: solution and refinement of twinned structures , 2016 .

[12]  Sk Imran Ali,et al.  Resonance-stabilized partial proton transfer in hydrogen bonds of incommensurate phenazine–chloranilic acid , 2015, Acta crystallographica Section B, Structural science, crystal engineering and materials.

[13]  J. Steed,et al.  Packing problems: high Z' crystal structures and their relationship to cocrystals, inclusion compounds, and polymorphism. , 2015, Chemical reviews.

[14]  A. Abakumov,et al.  Superspace crystallography: a key to the chemistry and properties , 2015, IUCrJ.

[15]  I. Hamada,et al.  Single crystal biphenyl end-capped furan-incorporated oligomers: influence of unusual packing structure on carrier mobility and luminescence , 2013 .

[16]  Santiago Alvarez,et al.  A cartography of the van der Waals territories. , 2013, Dalton transactions.

[17]  H. Stokes,et al.  Equivalence of superspace groups , 2012, Acta crystallographica. Section A, Foundations of crystallography.

[18]  Victor Snieckus,et al.  Palladium-catalyzed cross-coupling: a historical contextual perspective to the 2010 Nobel Prize. , 2012, Angewandte Chemie.

[19]  M. Mayor,et al.  Conduction mechanisms in biphenyl dithiol single-molecule junctions , 2011, 1109.0273.

[20]  F. Tham,et al.  A Temperature Dependent X-ray Study of the Order–Disorder Enantiotropic Phase Transition of p-Terphenyl , 2012, Journal of Chemical Crystallography.

[21]  A. Schoenleber Organic molecular compounds with modulated crystal structures , 2011 .

[22]  Sander van Smaalen,et al.  Generation of (3 + d)-dimensional superspace groups for describing the symmetry of modulated crystalline structures. , 2011, Acta crystallographica. Section A, Foundations of crystallography.

[23]  F. Evers,et al.  Influence of conformation on conductance of biphenyl-dithiol single-molecule contacts. , 2010, Nano letters.

[24]  Marcel Mayor,et al.  Chemically controlled conductivity: torsion-angle dependence in a single-molecule biphenyldithiol junction. , 2009, Angewandte Chemie.

[25]  T. Wagner,et al.  A non-mathematical introduction to the superspace description of modulated structures. , 2009, Acta crystallographica. Section B, Structural science.

[26]  Gervais Chapuis,et al.  SUPERFLIP– a computer program for the solution of crystal structures by charge flipping in arbitrary dimensions , 2007 .

[27]  P. Pattison,et al.  The (3 + 1)-dimensional superspace description of the commensurately modulated structure of p-chlorobenzamide (α-form) and its relation to the γ-form , 2003 .

[28]  G. Chapuis,et al.  NADA – a computer program for the simultaneous refinement of orientation matrix and modulation vector(s) , 2001 .

[29]  Kazuya Saito,et al.  Entropic evidence of the order-disorder nature of the phase transition in p-terphenyl crystal , 1998 .

[30]  Robin Taylor,et al.  Intermolecular Nonbonded Contact Distances in Organic Crystal Structures: Comparison with Distances Expected from van der Waals Radii , 1996 .

[31]  C. Alsenoy,et al.  Solids modelled by crystal field ab initio methods. 5. The phase transitions in biphenyl from a molecular point of view , 1994 .

[32]  Schranz,et al.  Phenomenological theory of incommensurate phases in biphenyl. , 1989, Physical Review B (Condensed Matter).

[33]  V. Heine,et al.  The incommensurate phase transition of biphenyl , 1987 .

[34]  Heine,et al.  Excitations in biphenyl's incommensurate phase III. , 1987, Physical Review Letters.

[35]  V. Petříček,et al.  Structure analysis of displacively modulated molecular crystals , 1985 .

[36]  Kazuya Saito,et al.  Molar heat capacity and thermodynamic properties of p-quaterphenyl☆ , 1985 .

[37]  C. Ecolivet,et al.  Brillouin scattering in polyphenyls. II. Through the incommensurate phases of biphenyl , 1983 .

[38]  W. Busing Modeling the phase change in crystalline biphenyl by using a temperature‐dependent potential , 1983 .

[39]  M. Sanquer,et al.  Structural phase transition in polyphenyls. VIII. The modulated structure of phase III of biphenyl (T∝ 20 K) from neutron diffraction data , 1983 .

[40]  N. I. Wakayama Low-energy electronic transitions and phase transition of the biphenyl crystal , 1981 .

[41]  Y. Ishibashi A Tentative Phenomenological Theory of Incommensurate Phase Transitions in Biphenyl , 1981 .

[42]  G. Charbonneau,et al.  Biphenyl: three‐dimensional data and new refinement at 293 K , 1977 .

[43]  A. Bree,et al.  A study of the second order phase transition in biphenyl at 40 K through raman spectroscopy , 1977 .

[44]  T. Janssen,et al.  Symmetry of periodically distorted crystals , 1977 .

[45]  G.-P. Charbonneau,et al.  Structural transition in polyphenyls. III. Crystal structure of biphenyl at 110 K , 1976 .

[46]  D. Wolff The Pseudo-Symmetry of Modulated Crystal Structures , 1974 .

[47]  P. Prasad,et al.  Spectroscopic evidence for a continuous change in molecular and crystal structure: deformation of biphenyl in the low temperature solid , 1974 .

[48]  R. Hochstrasser,et al.  Low energy magnetic and electric dipole transitions of the biphenyl crystal , 1973 .

[49]  M. Simonetta,et al.  The molecular structure of biphenyl in the gas and solid phases , 1968 .

[50]  J. Trotter The crystal and molecular structure of biphenyl , 1961 .