Reverse mapping method for complex polymer systems
暂无分享,去创建一个
Giovanni Samaey | Jakub Krajniak | Zidan Zhang | Sudharsan Pandiyan | Eric Nies | G. Samaey | S. Pandiyan | Zidan Zhang | Jakub Krajniak | E. Nies
[1] John D. Hunter,et al. Matplotlib: A 2D Graphics Environment , 2007, Computing in Science & Engineering.
[2] P. Khalatur,et al. Highly Cross-Linked Epoxy Resins: An Atomistic Molecular Dynamics Simulation Combined with a Mapping/Reverse Mapping Procedure , 2007 .
[3] J. Clarke,et al. Molecular dynamics simulation of an amorphous polymer under tension. 1. Phenomenology , 1991 .
[4] Janet E. Jones. On the determination of molecular fields. —II. From the equation of state of a gas , 1924 .
[5] Alexander Lukyanov,et al. Versatile Object-Oriented Toolkit for Coarse-Graining Applications. , 2009, Journal of chemical theory and computation.
[6] S. Godtfredsen,et al. Ullmann ' s Encyclopedia of Industrial Chemistry , 2017 .
[7] Dirk Reith,et al. Deriving effective mesoscale potentials from atomistic simulations , 2002, J. Comput. Chem..
[8] F. Müller-Plathe,et al. A coarse-grained molecular dynamics – reactive Monte Carlo approach to simulate hyperbranched polycondensation , 2014 .
[9] S. Crescitelli,et al. A multiscale approach to triglycerides simulations: from atomistic to coarse-grained models and back. , 2012, Faraday discussions.
[11] G. Odegard,et al. Molecular modeling of crosslink distribution in epoxy polymers , 2012 .
[12] V. Varshney,et al. A Molecular Dynamics Study of Epoxy-Based Networks : Cross-Linking Procedure and Prediction of Molecular and Material Properties , 2008 .
[13] M. Cho,et al. The glass transition and thermoelastic behavior of epoxy-based nanocomposites: A molecular dynamics study , 2011 .
[14] Brian E. Granger,et al. IPython: A System for Interactive Scientific Computing , 2007, Computing in Science & Engineering.
[15] H. Berendsen,et al. Efficient Algorithms for Langevin and DPD Dynamics. , 2012, Journal of chemical theory and computation.
[16] Pep Español,et al. Statistical Mechanics of Coarse-Graining , 2004 .
[17] José Mario Martínez,et al. PACKMOL: A package for building initial configurations for molecular dynamics simulations , 2009, J. Comput. Chem..
[18] Z. Zhang,et al. Multiscale Simulation Study on the Curing Reaction and the Network Structure in a Typical Epoxy System , 2011 .
[19] Multi-scale modeling of polyimides , 2004 .
[20] Weijian Xu,et al. Atomistic molecular modelling of crosslinked epoxy resin , 2006 .
[21] D. Yan,et al. Hyperbranched polymers: from synthesis to applications , 2004 .
[22] Pavel G. Khalatur,et al. Thermal Properties and Topology of Epoxy Networks: A Multiscale Simulation Methodology , 2015 .
[23] Xin-She Yang,et al. Introduction to Algorithms , 2021, Nature-Inspired Optimization Algorithms.
[24] J. A. Barker,et al. Monte Carlo studies of the dielectric properties of water-like models , 1973 .
[25] H. Berendsen,et al. Molecular dynamics with coupling to an external bath , 1984 .
[26] You-Liang Zhu,et al. A kinetic chain growth algorithm in coarse‐grained simulations , 2016, J. Comput. Chem..
[27] Siewert J Marrink,et al. Going Backward: A Flexible Geometric Approach to Reverse Transformation from Coarse Grained to Atomistic Models. , 2014, Journal of chemical theory and computation.
[28] Denis J. Evans,et al. The Nose–Hoover thermostat , 1985 .
[29] Pierre de Buyl,et al. H5MD: A structured, efficient, and portable file format for molecular data , 2013, Comput. Phys. Commun..
[30] A. Khokhlov,et al. Influence of cross-linking rate on the structure of hypercrosslinked networks: Multiscale computer simulation , 2016 .
[31] Matthew Ming Fai Yuen,et al. Material properties of the cross-linked epoxy resin compound predicted by molecular dynamics simulation , 2007 .
[32] Giovanni Samaey,et al. Coarse‐grained molecular dynamics simulations of polymerization with forward and backward reactions , 2018, J. Comput. Chem..
[33] P. B. Warren,et al. DISSIPATIVE PARTICLE DYNAMICS : BRIDGING THE GAP BETWEEN ATOMISTIC AND MESOSCOPIC SIMULATION , 1997 .
[34] Kurt Kremer,et al. Multiscale simulation of soft matter systems – from the atomistic to the coarse-grained level and back , 2009 .
[35] Ilpo Vattulainen,et al. Novel Methods in Soft Matter Simulations , 2013 .
[36] Andrzej J. Rzepiela,et al. Reconstruction of atomistic details from coarse‐grained structures , 2010, J. Comput. Chem..
[37] F. Müller-Plathe,et al. A Simple Reverse Mapping Procedure for Coarse-Grained Polymer Models with Rigid Side Groups , 2011 .
[38] D. Roose,et al. A molecular dynamics study of water transport inside an epoxy polymer matrix , 2015 .
[39] H. Komber,et al. Conversion dependence of the structural units and the degree of branching of a hyperbranched polyester based on 4,4-bis-(4'-hydroxyphenyl)pentanoic acid determined by NMR spectroscopy , 1999 .
[40] W. L. Jorgensen,et al. Development and Testing of the OPLS All-Atom Force Field on Conformational Energetics and Properties of Organic Liquids , 1996 .
[41] E. Peters,et al. Multi-scale simulations for predicting material properties of a cross-linked polymer , 2015 .
[42] Jakub Krajniak. lab-tools: Set of Python scripts for analysing molecular dynamics simulations of polymers: release v1.3 , 2016 .
[43] F. E. Karasz,et al. Nature of the water-epoxy interaction , 1985 .
[44] F. Müller-Plathe,et al. Reactive molecular dynamics with material-specific coarse-grained potentials: growth of polystyrene chains from styrene monomers. , 2010, The journal of physical chemistry. B.
[45] G. Samaey,et al. Generic Adaptive Resolution Method for Reverse Mapping of Polymers from Coarse-Grained to Atomistic Descriptions. , 2016, Journal of chemical theory and computation.
[46] William L. Jorgensen,et al. Optimized intermolecular potential functions for liquid hydrocarbons , 1984 .
[47] Bernd Ensing,et al. Coarse Grained-to-Atomistic Mapping Algorithm: A Tool for Multiscale Simulations , 2007 .
[48] Berk Hess,et al. GROMACS: High performance molecular simulations through multi-level parallelism from laptops to supercomputers , 2015 .
[49] Thomas Brandes,et al. ESPResSo++: A modern multiscale simulation package for soft matter systems , 2013, Comput. Phys. Commun..
[50] E. Nies,et al. A parallel algorithm for step- and chain-growth polymerization in molecular dynamics. , 2014, The Journal of chemical physics.
[51] S. Neyertz,et al. Preparation of bulk melt chain configurations of polycyclic polymers , 2001 .
[52] P. Khalatur,et al. Fully atomistic molecular dynamics simulation of nanosilica-filled crosslinked polybutadiene , 2016 .
[53] A. Khokhlov,et al. Hypercrosslinked polystyrene networks: an atomistic molecular dynamics simulation combined with a mapping/reverse mapping procedure. , 2014, The Journal of chemical physics.