Trans-scale Granular Modelling of Cytoskeleton: aMini-Review
暂无分享,去创建一个
Prasad K. Yarlagadda | Adekunle Oloyede | Tong Li | YuanTong Gu | Namal Thibbotuwawa | P. Yarlagadda | Tong Li | A. Oloyede | Namal Thibbotuwawa | Yuantong T. Gu
[1] M. Omary,et al. Intermediate filament proteins and their associated diseases. , 2004, The New England journal of medicine.
[2] A. Erdemir,et al. Multiscale modeling in computational biomechanics , 2009, IEEE Engineering in Medicine and Biology Magazine.
[3] K Weber,et al. Intermediate filaments: structure, dynamics, function, and disease. , 1994, Annual review of biochemistry.
[4] David A Weitz,et al. The cell as a material. , 2007, Current opinion in cell biology.
[5] L. C. Zhang,et al. A Concurrent Multiscale Method Based on the Meshfree Method and Molecular Dynamics Analysis , 2006, Multiscale Model. Simul..
[6] M. Selman,et al. Cell size, cell cycle, and α-smooth muscle actin expression by primary human lung fibroblasts. , 1998, American journal of physiology. Lung cellular and molecular physiology.
[7] Tao Wu,et al. Molecular simulation of protein adsorption and desorption on hydroxyapatite surfaces. , 2008, Biomaterials.
[8] M. Omary,et al. "Heads and tails" of intermediate filament phosphorylation: multiple sites and functional insights. , 2006, Trends in biochemical sciences.
[9] Ravi Iyengar,et al. Multiscale modeling of cell shape from the actin cytoskeleton. , 2014, Progress in molecular biology and translational science.
[10] T. Yanagida,et al. Direct measurement of stiffness of single actin filaments with and without tropomyosin by in vitro nanomanipulation. , 1994, Proceedings of the National Academy of Sciences of the United States of America.
[11] J. Berg,et al. Molecular dynamics simulations of biomolecules , 2002, Nature Structural Biology.
[12] Prasad K. Yarlagadda,et al. Hierarchical multiscale model for biomechanics analysis of microfilament networks , 2013 .
[13] S. Almo,et al. Structure and dynamics of the actin filament. , 2005, Biochemistry.
[14] R. Ritchie,et al. Bioinspired structural materials. , 2014, Nature Materials.
[15] Roger D Kamm,et al. Dynamic role of cross-linking proteins in actin rheology. , 2011, Biophysical journal.
[16] Umberto Morbiducci,et al. Biomechanics of actin filaments: a computational multi-level study. , 2011, Journal of biomechanics.
[17] S. Suresh,et al. Cell and molecular mechanics of biological materials , 2003, Nature materials.
[18] Julia E. Sero,et al. The forces of cancer , 2019, Philosophical Transactions of the Royal Society B.
[19] M. Buehler,et al. Computational and theoretical modeling of intermediate filament networks: Structure, mechanics and disease , 2012 .
[20] Gang-Yu Liu,et al. Cell mechanics using atomic force microscopy-based single-cell compression. , 2006, Langmuir : the ACS journal of surfaces and colloids.
[21] P. Janmey,et al. Cell mechanics: integrating cell responses to mechanical stimuli. , 2007, Annual review of biomedical engineering.
[22] Ilpo Vattulainen,et al. Strain hardening, avalanches, and strain softening in dense cross-linked actin networks. , 2008, Physical review. E, Statistical, nonlinear, and soft matter physics.
[23] J. Howard,et al. Flexural rigidity of microtubules and actin filaments measured from thermal fluctuations in shape , 1993, The Journal of cell biology.
[24] D. Ingber. Tensegrity I. Cell structure and hierarchical systems biology , 2003, Journal of Cell Science.
[25] D. Hartmann. A multiscale model for red blood cell mechanics , 2010, Biomechanics and modeling in mechanobiology.
[26] Xi-Qiao Feng,et al. Coarse-grained mechanochemical model for simulating the dynamic behavior of microtubules. , 2011, Physical review. E, Statistical, nonlinear, and soft matter physics.
[27] Adekunle Oloyede,et al. Molecular investigation of the mechanical properties of single actin filaments based on vibration analyses , 2014, Computer methods in biomechanics and biomedical engineering.
[28] C Zhu,et al. Cell mechanics: mechanical response, cell adhesion, and molecular deformation. , 2000, Annual review of biomedical engineering.
[29] Andreas R. Bausch,et al. A bottom-up approach to cell mechanics , 2006 .
[30] Yuichiro Maéda,et al. The nature of the globular- to fibrous-actin transition , 2009, Nature.
[31] Peng Chen,et al. Strain stiffening induced by molecular motors in active crosslinked biopolymer networks , 2010, 1009.0548.
[32] D. Weitz,et al. Elastic Behavior of Cross-Linked and Bundled Actin Networks , 2004, Science.
[33] Taiji Adachi,et al. Multiscale modeling and mechanics of filamentous actin cytoskeleton , 2012, Biomechanics and modeling in mechanobiology.
[34] Alberto Redaelli,et al. Hierarchical structure and nanomechanics of collagen microfibrils from the atomistic scale up. , 2011, Nano letters.
[35] E. Shakhnovich,et al. Understanding hierarchical protein evolution from first principles. , 2001, Journal of molecular biology.
[36] S T Quek,et al. Mechanical models for living cells--a review. , 2006, Journal of biomechanics.
[37] Markus J. Buehler,et al. Robustness-Strength Performance of Hierarchical Alpha-Helical Protein Filaments , 2009 .
[38] Roger D. Kamm,et al. Computational Analysis of a Cross-linked Actin-like Network , 2009 .
[39] P. Janmey,et al. Viscoelasticity of F-actin and F-actin/gelsolin complexes. , 1988, Biochemistry.
[40] Markus J Buehler,et al. A multi-scale approach to understand the mechanobiology of intermediate filaments. , 2010, Journal of biomechanics.
[41] Markus J. Buehler,et al. Alpha-Helical Protein Networks Are Self-Protective and Flaw-Tolerant , 2009, PloS one.
[42] A. Shahsavari,et al. Multiscale modeling of semiflexible random fibrous structures , 2013, Comput. Aided Des..
[43] P. Matsudaira,et al. Bending stiffness of a crystalline actin bundle. , 2004, Journal of molecular biology.
[44] K. Holmes. Structural biology: Actin in a twist , 2009, Nature.
[45] H E Huxley,et al. X-ray diffraction measurements of the extensibility of actin and myosin filaments in contracting muscle. , 1994, Biophysical journal.
[46] T. Pollard,et al. Cellular Motility Driven by Assembly and Disassembly of Actin Filaments , 2003, Cell.
[47] T. Pollard. Mechanics of cytokinesis in eukaryotes. , 2010, Current opinion in cell biology.
[48] R. Himeno,et al. Biomechanical characterization of ventricular-arterial coupling during aging: a multi-scale model study. , 2009, Journal of biomechanics.
[49] George Em Karniadakis,et al. Probing red blood cell mechanics, rheology and dynamics with a two-component multi-scale model , 2014, Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences.
[50] Gregory A Voth,et al. Coarse-grained modeling of the actin filament derived from atomistic-scale simulations. , 2006, Biophysical journal.
[51] Tong Li,et al. A stochastic thermostat algorithm for coarse-grained thermomechanical modeling of large-scale soft matters: Theory and application to microfilaments , 2014, J. Comput. Phys..
[52] Gregory A Voth,et al. Multiscale modeling of biomolecular systems: in serial and in parallel. , 2007, Current opinion in structural biology.
[53] S. Cowin,et al. A model for strain amplification in the actin cytoskeleton of osteocytes due to fluid drag on pericellular matrix. , 2001, Journal of biomechanics.
[54] D A Weitz,et al. Stress-dependent elasticity of composite actin networks as a model for cell behavior. , 2006, Physical review letters.
[55] Mohammad R K Mofrad,et al. Computational modeling of axonal microtubule bundles under tension. , 2012, Biophysical journal.
[56] U Aebi,et al. Exploring the mechanical behavior of single intermediate filaments. , 2005, Journal of molecular biology.
[57] Ning Wang,et al. Mechanics of vimentin intermediate filaments , 2004, Journal of Muscle Research & Cell Motility.
[58] F. Migliavacca,et al. Multiscale modelling in biofluidynamics: application to reconstructive paediatric cardiac surgery. , 2006, Journal of biomechanics.
[59] Gerald H Pollack,et al. Mechanics of F-actin characterized with microfabricated cantilevers. , 2002, Biophysical journal.
[60] Anthony A. Hyman,et al. Dynamics and mechanics of the microtubule plus end , 2022 .
[61] D Stamenović,et al. Contribution of intermediate filaments to cell stiffness, stiffening, and growth. , 2000, American journal of physiology. Cell physiology.
[62] Masaki Hojo,et al. Evaluation of extensional and torsional stiffness of single actin filaments by molecular dynamics analysis. , 2010, Journal of biomechanics.
[63] Marco Viceconti,et al. Are spontaneous fractures possible? An example of clinical application for personalised, multiscale neuro-musculo-skeletal modelling. , 2012, Journal of biomechanics.
[64] Multiscale modeling of the nanomechanics of microtubule protofilaments. , 2012, The journal of physical chemistry. B.
[65] Daniel A. Fletcher,et al. Cell mechanics and the cytoskeleton , 2010, Nature.
[66] Ueli Aebi,et al. Intermediate filaments: from cell architecture to nanomechanics , 2007, Nature Reviews Molecular Cell Biology.
[67] Mischa Schmidt,et al. Destruction of cancer cells by laser-induced shock waves: recent developments in experimental treatments and multiscale computer simulations. , 2014, Soft matter.
[68] P. Yarlagadda,et al. Continuum mechanics modelling of microfilament networks with different architectures based on molecular investigation of single F-actin , 2012 .
[69] Junru Wu,et al. Actin filament mechanics in the laser trap , 1997, Journal of Muscle Research & Cell Motility.
[70] Daniel A. Fletcher,et al. Reversible stress softening of actin networks , 2007, Nature.
[71] Thomas D. Pollard,et al. Actin, a Central Player in Cell Shape and Movement , 2009, Science.
[72] Masaki Hojo,et al. Coarse-grained modeling and simulation of actin filament behavior based on Brownian dynamics method. , 2009, Molecular & cellular biomechanics : MCB.
[73] George Oster,et al. Force generation by actin polymerization II: the elastic ratchet and tethered filaments. , 2003, Biophysical journal.
[74] Andrea Acquaviva,et al. Multiscale modeling of cellular actin filaments: From atomistic molecular to coarse‐grained dynamics , 2012, Proteins.
[75] Paul Martin,et al. Wound Healing--Aiming for Perfect Skin Regeneration , 1997, Science.