Identification of genotype-selective antitumor agents using synthetic lethal chemical screening in engineered human tumor cells.

We used synthetic lethal high-throughput screening to interrogate 23,550 compounds for their ability to kill engineered tumorigenic cells but not their isogenic normal cell counterparts. We identified known and novel compounds with genotype-selective activity, including doxorubicin, daunorubicin, mitoxantrone, camptothecin, sangivamycin, echinomycin, bouvardin, NSC146109, and a novel compound that we named erastin. These compounds have increased activity in the presence of hTERT, the SV40 large and small T oncoproteins, the human papillomavirus type 16 (HPV) E6 and E7 oncoproteins, and oncogenic HRAS. We found that overexpressing hTERT and either E7 or LT increased expression of topoisomerase 2alpha and that overexpressing RAS(V12) and ST both increased expression of topoisomerase 1 and sensitized cells to a nonapoptotic cell death process initiated by erastin.

[1]  Stuart L. Schreiber,et al.  A mammalian protein targeted by G1-arresting rapamycin–receptor complex , 1994, Nature.

[2]  M. Waring,et al.  Echinomycin: a bifunctional intercalating antibiotic , 1974, Nature.

[3]  X M Wang,et al.  A new microcellular cytotoxicity test based on calcein AM release. , 1993, Human immunology.

[4]  B. Chénais,et al.  Free radical production and labile iron pool decrease triggered by subtoxic concentration of aclarubicin in human leukemia cell lines. , 2002, Leukemia research.

[5]  L. Liu,et al.  Interaction between replication forks and topoisomerase I-DNA cleavable complexes: studies in a cell-free SV40 DNA replication system. , 1993, Cancer research.

[6]  S. Haggarty,et al.  High-throughput screening of small molecules in miniaturized mammalian cell-based assays involving post-translational modifications. , 1999, Chemistry & biology.

[7]  C J L M Meijer,et al.  The causal relation between human papillomavirus and cervical cancer. , 2002, Journal of clinical pathology.

[8]  Y. Suzuki,et al.  Characterization of a mammalian mutant with a camptothecin-resistant DNA topoisomerase I. , 1987, Proceedings of the National Academy of Sciences of the United States of America.

[9]  D. Niethammer,et al.  Anthracycline-derived chemotherapeutics in apoptosis and free radical cytotoxicity (Review). , 1998, International journal of molecular medicine.

[10]  M. Beato,et al.  A transgenic mouse model for lung adenocarcinoma. , 1997, Cell growth & differentiation : the molecular biology journal of the American Association for Cancer Research.

[11]  S. Schreiber Chemical genetics resulting from a passion for synthetic organic chemistry. , 1998, Bioorganic & medicinal chemistry.

[12]  M. Van Dyke,et al.  Echinomycin binding sites on DNA. , 1984, Science.

[13]  J. Jaffrezou,et al.  Signaling pathways activated by daunorubicin. , 2001, Blood.

[14]  B. Stockwell,et al.  Frontiers in chemical genetics. , 2000, Trends in biotechnology.

[15]  C. Perez-stable,et al.  Prostate cancer progression, metastasis, and gene expression in transgenic mice. , 1997, Cancer research.

[16]  Robert A. Weinberg,et al.  Creation of human tumour cells with defined genetic elements , 1999, Nature.

[17]  Jürg Zimmermann,et al.  Effects of a selective inhibitor of the Abl tyrosine kinase on the growth of Bcr–Abl positive cells , 1996, Nature Medicine.

[18]  J. Minna,et al.  Alterations of the PPP2R1B gene in human lung and colon cancer. , 1998, Science.

[19]  L. Liu,et al.  Involvement of nucleic acid synthesis in cell killing mechanisms of topoisomerase poisons. , 1990, Cancer research.

[20]  C. Der,et al.  Distinct requirements for Ras oncogenesis in human versus mouse cells. , 2002, Genes & development.

[21]  Alex Matter,et al.  Glivec (STI571, imatinib), a rationally developed, targeted anticancer drug , 2002, Nature Reviews Drug Discovery.

[22]  K. V. Rao Structure of sangivamycin. , 1968, Journal of medicinal chemistry.

[23]  R. Oppenheim,et al.  Caspase inhibitors promote the survival of avulsed spinal motoneurons in neonatal rats , 2001, Neuroreport.

[24]  L. Liu,et al.  Identification of mammalian DNA topoisomerase I as an intracellular target of the anticancer drug camptothecin. , 1988, Cancer research.

[25]  J. Testa,et al.  SV40 and cell cycle perturbations in malignant mesothelioma. , 2001, Seminars in cancer biology.

[26]  A. Jimenez,et al.  The mode of action of the antitumor drug bouvardin, an inhibitor of protein synthesis in eukaryotic cells , 1982, FEBS letters.

[27]  T. Golub,et al.  Supplemental Information for , 2002 .

[28]  R. Sternglanz,et al.  Evidence that DNA topoisomerase I is necessary for the cytotoxic effects of camptothecin. , 1988, Molecular pharmacology.

[29]  G. Makin Targeting apoptosis in cancer chemotherapy , 2002, Expert opinion on therapeutic targets.

[30]  J. Wang,et al.  Expression of human DNA topoisomerase I in yeast cells lacking yeast DNA topoisomerase I: restoration of sensitivity of the cells to the antitumor drug camptothecin. , 1989, Cancer research.

[31]  Leroy F. Liu,et al.  Mechanism of Action of Camptothecin , 1996, Annals of the New York Academy of Sciences.

[32]  G. Russo,et al.  Low frequency of alterations of the α (PPP2R1A) and β (PPP2R1B) isoforms of the subunit A of the serine-threonine phosphatase 2A in human neoplasms , 2000, Oncogene.

[33]  A. Ullrich,et al.  Smart drugs: tyrosine kinase inhibitors in cancer therapy. , 2002, Cancer cell.

[34]  R. McLendon,et al.  A genetically tractable model of human glioma formation. , 2001, Cancer research.

[35]  M. Shibata,et al.  Development and characterization of a mouse prostate adenocarcinoma cell line: Ductal formation determined by extracellular matrix , 1998, The Prostate.

[36]  J. Champoux,et al.  Overexpression of human topoisomerase I in baby hamster kidney cells: hypersensitivity of clonal isolates to camptothecin. , 1992, Cancer research.

[37]  Z. Darżynkiewicz,et al.  Induction of Apoptosis by Camptothecin and Topotecan , 1996, Annals of the New York Academy of Sciences.

[38]  S. Ahmed,et al.  A new rapid and simple non-radioactive assay to monitor and determine the proliferation of lymphocytes: an alternative to [3H]thymidine incorporation assay. , 1994, Journal of immunological methods.

[39]  Paul Tempst,et al.  RAFT1: A mammalian protein that binds to FKBP12 in a rapamycin-dependent fashion and is homologous to yeast TORs , 1994, Cell.

[40]  J. Champoux Structure‐Based Analysis of the Effects of Camptothecin on the Activities of Human Topoisomerase I , 2000, Annals of the New York Academy of Sciences.

[41]  Robert A. Weinberg,et al.  Enumeration of the Simian Virus 40 Early Region Elements Necessary for Human Cell Transformation , 2002, Molecular and Cellular Biology.

[42]  W. Hahn,et al.  Human breast cancer cells generated by oncogenic transformation of primary mammary epithelial cells. , 2001, Genes & development.

[43]  C. London,et al.  Kinase inhibitors in cancer therapy. , 2004, Veterinary and comparative oncology.

[44]  R. Bell,et al.  Sangivamycin, a nucleoside analogue, is a potent inhibitor of protein kinase C. , 1988, The Journal of biological chemistry.

[45]  A. Okamoto,et al.  Alterations of the PPP1R3 gene in human cancer. , 1999, Cancer Research.

[46]  P. Benias,et al.  A novel one-step, highly sensitive fluorometric assay to evaluate cell-mediated cytotoxicity. , 1998, Journal of immunological methods.

[47]  Huong T. T. Pham,et al.  Alterations in protein phosphatase 2A subunit interaction in human carcinomas of the lung and colon with mutations in the Aβ subunit gene , 2001, Oncogene.

[48]  K. Mokbel,et al.  From HER2 to Herceptin , 2001, Current medical research and opinion.

[49]  L. Liu,et al.  Arrest of replication forks by drug-stabilized topoisomerase I-DNA cleavable complexes as a mechanism of cell killing by camptothecin. , 1989, Cancer research.

[50]  Y. Oron,et al.  Establishment of a chemical synthetic lethality screen in cultured human cells. , 2001, Genome research.

[51]  K. Kinzler,et al.  Use of isogenic human cancer cells for high-throughput screening and drug discovery , 2001, Nature Biotechnology.

[52]  G. Majno,et al.  Apoptosis, oncosis, and necrosis. An overview of cell death. , 1995, The American journal of pathology.

[53]  Huong T. T. Pham,et al.  Disruption of protein phosphatase 2A subunit interaction in human cancers with mutations in the Aα subunit gene , 2001, Oncogene.

[54]  W. Hahn,et al.  Modelling the molecular circuitry of cancer , 2002, Nature Reviews Cancer.

[55]  P. D'Arpa,et al.  Mechanism of Action of Camptothecin , 1996, Annals of the New York Academy of Sciences.

[56]  W. Kaelin,et al.  Role of the retinoblastoma protein in the pathogenesis of human cancer. , 1997, Journal of clinical oncology : official journal of the American Society of Clinical Oncology.

[57]  B. Hemmings,et al.  Regulation of protein kinase cascades by protein phosphatase 2A. , 1999, Trends in biochemical sciences.

[58]  B. Stockwell Chemical genetics: ligand-based discovery of gene function , 2000, Nature Reviews Genetics.

[59]  R. Bookstein,et al.  Mutations to CCI-779 PTEN Enhanced Sensitivity of Multiple Myeloma Cells Containing Updated Version , 2002 .

[60]  Charles J. Sherr,et al.  The INK4a/ARF network in tumour suppression , 2001, Nature Reviews Molecular Cell Biology.