Ecological succession in the vaginal microbiota during pregnancy and birth

[1]  Duy Tin Truong,et al.  Mother-to-Infant Microbial Transmission from Different Body Sites Shapes the Developing Infant Gut Microbiome , 2018, Cell host & microbe.

[2]  M. Yassour,et al.  Strain-Level Analysis of Mother-to-Child Bacterial Transmission during the First Few Months of Life. , 2018, Cell host & microbe.

[3]  Duy Tin Truong,et al.  Studying Vertical Microbiome Transmission from Mothers to Infants by Strain-Level Metagenomic Profiling , 2016, mSystems.

[4]  David K. Smith,et al.  ggtree: an r package for visualization and annotation of phylogenetic trees with their covariates and other associated data , 2017 .

[5]  S. Sørensen,et al.  The developing hypopharyngeal microbiota in early life , 2016, Microbiome.

[6]  Hans Bisgaard,et al.  Large-scale benchmarking reveals false discoveries and count transformation sensitivity in 16S rRNA gene amplicon data analysis methods used in microbiome studies , 2016, Microbiome.

[7]  K. Bønnelykke,et al.  Cesarean section changes neonatal gut colonization. , 2016, The Journal of allergy and clinical immunology.

[8]  Martin J. Blaser,et al.  Antibiotics, birth mode, and diet shape microbiome maturation during early life , 2016, Science Translational Medicine.

[9]  Paul J. McMurdie,et al.  DADA2: High resolution sample inference from Illumina amplicon data , 2016, Nature Methods.

[10]  Amnon Amir,et al.  Partial restoration of the microbiota of cesarean-born infants via vaginal microbial transfer , 2016, Nature Medicine.

[11]  N. Angelopoulos,et al.  The vaginal microbiome during pregnancy and the postpartum period in a European population , 2015, Scientific Reports.

[12]  Roberto Romero,et al.  The composition and stability of the vaginal microbiota of normal pregnant women is different from that of non-pregnant women , 2014, Microbiome.

[13]  K. Bønnelykke,et al.  Prevalence and Predictors of Antibiotic Administration during Pregnancy and Birth , 2013, PloS one.

[14]  K. Bønnelykke,et al.  Deep phenotyping of the unselected COPSAC2010 birth cohort study , 2013, Clinical and experimental allergy : journal of the British Society for Allergy and Clinical Immunology.

[15]  Robert C. Edgar,et al.  UPARSE: highly accurate OTU sequences from microbial amplicon reads , 2013, Nature Methods.

[16]  Susan Holmes,et al.  phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data , 2013, PloS one.

[17]  Jonathan Friedman,et al.  Inferring Correlation Networks from Genomic Survey Data , 2012, PLoS Comput. Biol..

[18]  Aleksandar Milosavljevic,et al.  A Metagenomic Approach to Characterization of the Vaginal Microbiome Signature in Pregnancy , 2012, PloS one.

[19]  Eric P. Nawrocki,et al.  An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea , 2011, The ISME Journal.

[20]  M. Freemark,et al.  Placental hormones and the control of maternal metabolism and fetal growth , 2011, Current opinion in endocrinology, diabetes, and obesity.

[21]  C. Arvidson,et al.  Lactobacilli at the front line of defense against vaginally acquired infections. , 2011, Future microbiology.

[22]  B. Haas,et al.  Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons. , 2011, Genome research.

[23]  Robert C. Edgar,et al.  BIOINFORMATICS APPLICATIONS NOTE , 2001 .

[24]  William A. Walters,et al.  QIIME allows analysis of high-throughput community sequencing data , 2010, Nature Methods.

[25]  G. Mor,et al.  REVIEW ARTICLE: The Immune System in Pregnancy: A Unique Complexity , 2010, American journal of reproductive immunology.

[26]  Martin Hartmann,et al.  Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities , 2009, Applied and Environmental Microbiology.

[27]  Adam P. Arkin,et al.  FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix , 2009, Molecular biology and evolution.

[28]  G. Mor.  Inflammation and Pregnancy , 2008, Annals of the New York Academy of Sciences.

[29]  Hans Bisgaard,et al.  Childhood asthma after bacterial colonization of the airway in neonates. , 2007, The New England journal of medicine.

[30]  R. Knight,et al.  Quantitative and Qualitative β Diversity Measures Lead to Different Insights into Factors That Structure Microbial Communities , 2007, Applied and Environmental Microbiology.

[31]  P. Legendre,et al.  vegan : Community Ecology Package. R package version 1.8-5 , 2007 .

[32]  B. Okoko,et al.  The epidemiology and consequences of maternal malaria: a review of immunological basis. , 2003, Acta tropica.

[33]  G. Mor.  Immunology of Implantation , 2002 .

[34]  Brian H. McArdle,et al.  FITTING MULTIVARIATE MODELS TO COMMUNITY DATA: A COMMENT ON DISTANCE‐BASED REDUNDANCY ANALYSIS , 2001 .

[35]  M A Krohn,et al.  The normal vaginal flora, H2O2-producing lactobacilli, and bacterial vaginosis in pregnant women. , 1993, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.

[36]  D. Faith.  Conservation evaluation and phylogenetic diversity , 1992 .