Thermodynamics and kinetics of actin filament nucleation.

[1]  M. Smoluchowski,et al.  Drei Vortrage uber Diffusion, Brownsche Bewegung und Koagulation von Kolloidteilchen , 1916 .

[2]  R C Wade,et al.  Simulation of the diffusional association of barnase and barstar. , 1997, Biophysical journal.

[3]  C. Cramer,et al.  Entropic contributions to free energies of solvation , 1994 .

[4]  T. Pollard,et al.  Kinetic evidence for a monomer activation step in actin polymerization. , 1983, Biochemistry.

[5]  D. Ermak,et al.  Brownian dynamics with hydrodynamic interactions , 1978 .

[6]  T D Pollard,et al.  Rate constants for the reactions of ATP- and ADP-actin with the ends of actin filaments , 1986, The Journal of cell biology.

[7]  J. Engel,et al.  Kinetics of the cooperative association of actin to actin filaments. , 1975, Biophysical chemistry.

[8]  A. Elcock,et al.  Computer Simulation of Protein−Protein Interactions , 2001 .

[9]  Rong Li,et al.  Activation of the yeast Arp2/3 complex by Bee1p, a WASP-family protein , 1999, Current Biology.

[10]  Carl Frieden,et al.  Yeast actin: polymerization kinetic studies of wild type and a poorly polymerizing mutant. , 1996, Proceedings of the National Academy of Sciences of the United States of America.

[11]  M. Carlier,et al.  Actin: protein structure and filament dynamics. , 1991, The Journal of biological chemistry.

[12]  M. Kirschner,et al.  The Interaction between N-WASP and the Arp2/3 Complex Links Cdc42-Dependent Signals to Actin Assembly , 1999, Cell.

[13]  M. Smoluchowski,et al.  Drei Vorträge über Diffusion, Brownsche Molekularbewegung und Koagulation von Kolloidteilchen , 1927 .

[14]  M. Lewis,et al.  Calculation of the free energy of association for protein complexes , 1992, Protein science : a publication of the Protein Society.

[15]  J A McCammon,et al.  Computer simulations of actin polymerization can explain the barbed-pointed end asymmetry. , 1999, Journal of molecular biology.

[16]  G. Hummer,et al.  Hydrophobic Effects on a Molecular Scale , 1998, physics/9807001.

[17]  J. Mccammon,et al.  Brownian dynamics simulation of diffusion‐influenced bimolecular reactions , 1984 .

[18]  T. Mitchison,et al.  Interaction of human Arp2/3 complex and the Listeria monocytogenes ActA protein in actin filament nucleation. , 1998, Science.

[19]  R C Wade,et al.  Brownian dynamics simulation of protein-protein diffusional encounter. , 1998, Methods.

[20]  M. P. Allen,et al.  Transport properties of the hard ellipsoid fluid , 1993 .

[21]  Michael K. Gilson,et al.  The determinants of pK(a)s in proteins , 1996 .

[22]  Thomas Simonson,et al.  Solvation Free Energies Estimated from Macroscopic Continuum Theory: An Accuracy Assessment , 1994 .

[23]  J. Moraczewska,et al.  Divalent cation-, nucleotide-, and polymerization-dependent changes in the conformation of subdomain 2 of actin. , 1999, Biophysical journal.

[24]  B Honig,et al.  Reconciling the magnitude of the microscopic and macroscopic hydrophobic effects. , 1991, Science.

[25]  W. Kabsch,et al.  Atomic model of the actin filament , 1990, Nature.

[26]  T. Pollard,et al.  Scar, a WASp-related protein, activates nucleation of actin filaments by the Arp2/3 complex. , 1999, Proceedings of the National Academy of Sciences of the United States of America.

[27]  Y. Fukunishi,et al.  REPRODUCTION OF THE POTENTIAL OF MEAN FORCE BY A MODIFIED SOLVENT-ACCESSIBLE SURFACE METHOD , 1996 .

[28]  H. Erickson,et al.  Co-operativity in protein-protein association. The structure and stability of the actin filament. , 1989, Journal of molecular biology.

[29]  T. Pollard,et al.  Polymerization and structure of nucleotide-free actin filaments. , 2000, Journal of molecular biology.

[30]  A. Tamura,et al.  The entropy cost of protein association. , 1997, Journal of molecular biology.

[31]  Thomas D. Pollard,et al.  Activation by Cdc42 and Pip2 of Wiskott-Aldrich Syndrome Protein (Wasp) Stimulates Actin Nucleation by Arp2/3 Complex , 2000, The Journal of cell biology.

[32]  J A McCammon,et al.  Computer simulation of protein-protein association kinetics: acetylcholinesterase-fasciculin. , 1999, Journal of molecular biology.

[33]  M. Gilson,et al.  The determinants of pKas in proteins. , 1996, Biochemistry.

[34]  E. Korn,et al.  The kinetics of actin nucleation and polymerization. , 1983, The Journal of biological chemistry.

[35]  K. Sharp,et al.  Entropy in protein folding and in protein-protein interactions. , 1997, Current opinion in structural biology.

[36]  T D Pollard,et al.  The interaction of Arp2/3 complex with actin: nucleation, high affinity pointed end capping, and formation of branching networks of filaments. , 1998, Proceedings of the National Academy of Sciences of the United States of America.

[37]  T. Pollard,et al.  Influence of the C terminus of Wiskott-Aldrich syndrome protein (WASp) and the Arp2/3 complex on actin polymerization. , 1999, Biochemistry.

[38]  J. E. Estes,et al.  Thermodynamics of actin polymerization; influence of the tightly bound divalent cation and nucleotide. , 1991, Biochimica et biophysica acta.

[39]  L. R. Scott,et al.  Electrostatics and diffusion of molecules in solution: simulations with the University of Houston Brownian dynamics program , 1995 .

[40]  Carl Frieden.  Polymerization of actin: mechanism of the Mg2+-induced process at pH 8 and 20 degrees C. , 1983, Proceedings of the National Academy of Sciences of the United States of America.

[41]  S. Subramaniam,et al.  Computer modeling of electrostatic steering and orientational effects in antibody-antigen association. , 1995, Biophysical journal.

[42]  C. Miller,et al.  Effects of charged amino acid mutations on the bimolecular kinetics of reduction of yeast iso-1-ferricytochrome c by bovine ferrocytochrome b5. , 1993, Biochemistry.

[43]  Matthew D. Welch,et al.  The Wiskott–Aldrich syndrome protein directs actin-based motility by stimulating actin nucleation with the Arp2/3 complex , 1999, Current Biology.

[44]  A. Wierzbicki,et al.  Intermolecular interaction between bovine pancreatic trypsin inhibitor molecules probed by Brownian dynamics simulation , 1991 .

[45]  M. Gilson,et al.  The statistical-thermodynamic basis for computation of binding affinities: a critical review. , 1997, Biophysical journal.

[46]  Carl Frieden,et al.  Polymerization of actin and actin-like systems: evaluation of the time course of polymerization in relation to the mechanism. , 1983, Biochemistry.

[47]  E. Lattman,et al.  Experimental measurement of the effective dielectric in the hydrophobic core of a protein. , 1997, Biophysical chemistry.