Critical Evaluation of a microRNA-Based Risk Classifier Predicting Cancer-Specific Survival in Renal Cell Carcinoma with Tumor Thrombus of the Inferior Vena Cava

Simple Summary Renal cell carcinomas (RCCs) can build a so-called tumor thrombus and grow into the renal vein and the vena cava, thereby representing a high-risk situation for affected patients. Nevertheless, there are substantial differences in the clinical courses of RCC patients with a tumor thrombus. Currently, there is no established biomarker which helps identifying patients with a substantial risk of tumor relapse or even cancer-related death. Previously, members of our group discovered a signature of three small RNA molecules (specifically: microRNAs) in RCC tissue, which significantly predicted cancer-related survival. In this study, we validated this signature in a larger cohort of patients suffering from RCCs with a tumor thrombus. Notably, stratifying our patients according to this microRNA signature nearly separated our cohort into two halves, which significantly differed in terms of clinical risk. Our research could help identifying high-risk patients in need for additional therapy, while sparing others from unnecessary treatments. Abstract (1) Background: Clear cell renal cell carcinoma extending into the inferior vena cava (ccRCCIVC) represents a clinical high-risk setting. However, there is substantial heterogeneity within this patient subgroup regarding survival outcomes. Previously, members of our group developed a microRNA(miR)-based risk classifier—containing miR-21-5p, miR-126-3p and miR-221-3p expression—which significantly predicted the cancer-specific survival (CSS) of ccRCCIVC patients. (2) Methods: Examining a single-center cohort of tumor tissue from n = 56 patients with ccRCCIVC, we measured the expression levels of miR-21, miR-126, and miR-221 using qRT-PCR. The prognostic impact of clinicopathological parameters and miR expression were investigated via single-variable and multivariable Cox regression. Referring to the previously established risk classifier, we performed Kaplan–Meier analyses for single miR expression levels and the combined risk classifier. Cut-off values and weights within the risk classifier were taken from the previous study. (3) Results: miR-21 and miR-126 expression were significantly associated with lymphonodal status at the time of surgery, the development of metastasis during follow-up, and cancer-related death. In Kaplan–Meier analyses, miR-21 and miR-126 significantly impacted CSS in our cohort. Moreover, applying the miR-based risk classifier significantly stratified ccRCCIVC according to CSS. (4) Conclusions: In our retrospective analysis, we successfully validated the miR-based risk classifier within an independent ccRCCIVC cohort.

[1]  H. Kume,et al.  Impact of the neutrophil-to-lymphocyte ratio as a surgical prognostic factor in renal cell carcinoma with inferior vena cava tumor thrombus. , 2022, Asian journal of surgery.

[2]  Kaitai Zhang,et al.  Prognostic Significance of NLR About NETosis and Lymphocytes Perturbations in Localized Renal Cell Carcinoma With Tumor Thrombus , 2021, Frontiers in Oncology.

[3]  U. Capitanio,et al.  2021 Updated European Association of Urology Guidelines on the Use of Adjuvant Pembrolizumab for Renal Cell Carcinoma. , 2021, European urology.

[4]  W. Biernat,et al.  Low Lymphocyte-to-Monocyte Ratio Is the Potential Indicator of Worse Overall Survival in Patients with Renal Cell Carcinoma and Venous Tumor Thrombus , 2021, Diagnostics.

[5]  J. Burke,et al.  Adjuvant Pembrolizumab after Nephrectomy in Renal-Cell Carcinoma. , 2021, The New England journal of medicine.

[6]  L. Gesualdo,et al.  The Ambivalent Role of miRNAs in Carcinogenesis: Involvement in Renal Cell Carcinoma and Their Clinical Applications , 2021, Pharmaceuticals.

[7]  B. Schilling,et al.  Subgroup-Independent Mapping of Renal Cell Carcinoma—Machine Learning Reveals Prognostic Mitochondrial Gene Signature Beyond Histopathologic Boundaries , 2021, Frontiers in Oncology.

[8]  Z. Sauna,et al.  Role of microRNAs in Hemophilia and Thrombosis in Humans , 2020, International journal of molecular sciences.

[9]  R. González-Barrios,et al.  The Promising Role of miR-21 as a Cancer Biomarker and Its Importance in RNA-Based Therapeutics , 2020, Molecular therapy. Nucleic acids.

[10]  B. Schilling,et al.  miR-221-3p Regulates VEGFR2 Expression in High-Risk Prostate Cancer and Represents an Escape Mechanism from Sunitinib In Vitro , 2020, Journal of clinical medicine.

[11]  Johannes L. Schönberger,et al.  Author Correction: SciPy 1.0: fundamental algorithms for scientific computing in Python , 2020, Nature Methods.

[12]  Joel Nothman,et al.  SciPy 1.0-Fundamental Algorithms for Scientific Computing in Python , 2019, ArXiv.

[13]  Cameron Davidson-Pilon,et al.  lifelines: survival analysis in Python , 2019, J. Open Source Softw..

[14]  J. Breyer,et al.  Impact of E-Cadherin and β-Catenin as Prognostic Factor in Renal Cell Carcinoma with Tumor Thrombus of the Vena Cava , 2019, Urologia Internationalis.

[15]  J. Sundquist,et al.  Association of recurrent venous thromboembolism and circulating microRNAs , 2019, Clinical Epigenetics.

[16]  E. Ruíz-García,et al.  AngiomiRs: MicroRNAs driving angiogenesis in cancer (Review). , 2018, International journal of molecular medicine.

[17]  Jian Kang,et al.  Plasma Levels of microRNA-221 (miR-221) are Increased in Patients with Acute Pulmonary Embolism , 2018, Medical science monitor : international medical journal of experimental and clinical research.

[18]  L. Trennheuser,et al.  Genomic features of renal cell carcinoma with venous tumor thrombus , 2018, Scientific Reports.

[19]  Han Liu,et al.  MicroRNA-221-3p is up-regulated and serves as a potential biomarker in pancreatic cancer , 2018, Artificial cells, nanomedicine, and biotechnology.

[20]  C. Kalogirou,et al.  Preoperative C-Reactive Protein Values as a Potential Component in Outcome Prediction Models of Metastasized Renal Cell Carcinoma Patients Receiving Cytoreductive Nephrectomy , 2017, Urologia Internationalis.

[21]  Z. Bacso,et al.  Surgical Management and Outcome of Renal Cell Carcinoma with Inferior Vena Cava Tumor Thrombus , 2017, Urologia Internationalis.

[22]  Jie Jin,et al.  Preoperative Gamma-Glutamyltransferase Is Associated with Cancer-Specific Survival and Recurrence-Free Survival of Nonmetastatic Renal Cell Carcinoma with Venous Tumor Thrombus , 2017, BioMed research international.

[23]  J. Patard,et al.  Adjuvant Sunitinib in High-Risk Renal-Cell Carcinoma after Nephrectomy. , 2016, The New England journal of medicine.

[24]  V. Margulis,et al.  Risk factors for recurrence after surgery in non‐metastatic RCC with thrombus: a contemporary multicentre analysis , 2016, BJU international.

[25]  J. Manola,et al.  Adjuvant sunitinib or sorafenib for high-risk, non-metastatic renal-cell carcinoma (ECOG-ACRIN E2805): a double-blind, placebo-controlled, randomised, phase 3 trial , 2016, The Lancet.

[26]  Guiming Zhang,et al.  MicroRNA-126 inhibits tumor cell invasion and metastasis by downregulating ROCK1 in renal cell carcinoma , 2016, Molecular medicine reports.

[27]  G. Yousef,et al.  miR-221/222 Are Involved in Response to Sunitinib Treatment in Metastatic Renal Cell Carcinoma. , 2015, Molecular therapy : the journal of the American Society of Gene Therapy.

[28]  C. Kalogirou,et al.  Metformin-Derived Growth Inhibition in Renal Cell Carcinoma Depends on miR-21-Mediated PTEN Expression , 2015, Urologia Internationalis.

[29]  A. Rosenwald,et al.  Impact of miR-21, miR-126 and miR-221 as Prognostic Factors of Clear Cell Renal Cell Carcinoma with Tumor Thrombus of the Inferior Vena Cava , 2014, PloS one.

[30]  V. Margulis,et al.  Oncologic outcomes following surgical resection of renal cell carcinoma with inferior vena caval thrombus extending above the hepatic veins: a contemporary multicenter cohort. , 2014, The Journal of urology.

[31]  Xiangyu Che,et al.  MicroRNA-21 (miR-21) Post-Transcriptionally Downregulates Tumor Suppressor PDCD4 and Promotes Cell Transformation, Proliferation, and Metastasis in Renal Cell Carcinoma , 2014, Cellular Physiology and Biochemistry.

[32]  M. Gessler,et al.  Survival in patients with high-risk prostate cancer is predicted by miR-221, which regulates proliferation, apoptosis, and invasion of prostate cancer cells by inhibiting IRF2 and SOCS3. , 2014, Cancer research.

[33]  Maximilian Burger,et al.  Combination of expression levels of miR-21 and miR-126 is associated with cancer-specific survival in clear-cell renal cell carcinoma , 2014, BMC Cancer.

[34]  K. Moon,et al.  Prognostic factor for Korean patients with renal cell carcinoma and venous tumor thrombus extension: application of the new 2009 TNM staging system. , 2013, International braz j urol : official journal of the Brazilian Society of Urology.

[35]  J. Nakashima,et al.  Clinical variables for predicting metastatic renal cell carcinoma patients who might not benefit from cytoreductive nephrectomy: neutrophil-to-lymphocyte ratio and performance status , 2014, International Journal of Clinical Oncology.

[36]  U. Bhawal,et al.  Downregulation of miR-126 induces angiogenesis and lymphangiogenesis by activation of VEGF-A in oral cancer , 2012, British Journal of Cancer.

[37]  M. Bushell,et al.  microRNAs in cancer management. , 2012, The Lancet. Oncology.

[38]  Rajvir Dahiya,et al.  Correction: Up-Regulation of MicroRNA-21 Correlates with Lower Kidney Cancer Survival , 2012, PLoS ONE.

[39]  Rajvir Dahiya,et al.  Up-Regulation of MicroRNA-21 Correlates with Lower Kidney Cancer Survival , 2012, PloS one.

[40]  C. Croce,et al.  miR221/222 in cancer: their role in tumor progression and response to therapy. , 2012, Current molecular medicine.

[41]  M. Spahn,et al.  Tumor thrombus of inferior vena cava in patients with renal cell carcinoma – clinical and oncological outcome of 50 patients after surgery , 2012, BMC Research Notes.

[42]  Xavier Robin,et al.  pROC: an open-source package for R and S+ to analyze and compare ROC curves , 2011, BMC Bioinformatics.

[43]  Wes McKinney,et al.  Data Structures for Statistical Computing in Python , 2010, SciPy.

[44]  Shusheng Wang,et al.  AngiomiRs--key regulators of angiogenesis. , 2009, Current opinion in genetics & development.

[45]  A. Belldegrun,et al.  Prognostic factors for renal cell carcinoma with tumor thrombus extension. , 2007, The Journal of urology.

[46]  P. Albers,et al.  Renal cell carcinoma with tumor thrombus extension into the vena cava: prospective long-term followup. , 2007, The Journal of urology.

[47]  John D. Hunter,et al.  Matplotlib: A 2D Graphics Environment , 2007, Computing in Science & Engineering.

[48]  F. Slack,et al.  Oncomirs — microRNAs with a role in cancer , 2006, Nature Reviews Cancer.

[49]  J. Cheville,et al.  The Mayo Clinic experience with surgical management, complications and outcome for patients with renal cell carcinoma and venous tumour thrombus , 2004, BJU international.

[50]  Ash A. Alizadeh,et al.  Prediction of survival in diffuse large-B-cell lymphoma based on the expression of six genes. , 2004, The New England journal of medicine.

[51]  V. Ambros microRNAs Tiny Regulators with Great Potential , 2001, Cell.

[52]  G. Roos,et al.  Vein invasion in renal cell carcinoma: impact on metastatic behavior and survival. , 1995, The Journal of urology.

[53]  P. Hermanek,et al.  Invasion of veins in renal cell carcinoma - frequency, correlation and prognosis. , 1983, European urology.

[54]  A. Novick,et al.  Surgical approach for removal of renal cell carcinoma extending into the vena cava and the right atrium. , 1980, The Journal of urology.

[55]  W. Youden,et al.  Index for rating diagnostic tests , 1950, Cancer.