Human and computational models of atopic dermatitis

Atopic dermatitis (AD) is a prevalent disease worldwide and is associated with systemic comorbidities representing a significant burden on patients, their families, and society. Therapeutic options for AD remain limited, in part because of a lack of well-characterized animal models. There has been increasing interest in developing experimental approaches to study the pathogenesis of human AD in vivo , in vitro , and in silico to better define pathophysiologic mechanisms and identify novel therapeutic targets and biomarkers that predict therapeutic response. This review critically appraises a range of models, including genetic mutations relevant to AD, experimental challenge of human skin in vivo , tissue culture models, integration of ‘‘omics’’ data sets, and development of predictive computational models. Although no one individual model recapitulates the complex AD pathophysiology, our review highlights insights gained into key elements of cutaneous biology, molecular pathways, and therapeutic target identification through each approach. Recent developments in computational analysis, including application of machine learning and a systems approach to data integration and predictive modeling, highlight the applicability of these methods to AD subclassification (endotyping), therapy development, and precision medicine. Such predictive modeling will highlight knowledge gaps, further inform refinement of biological models, and support new experimental and systems approaches to AD. (J Allergy Clin Immunol 2019;143:36-45.)

[1]  S. Kežić,et al.  Effect of atopic skin stressors on natural moisturizing factors and cytokines in healthy adult epidermis , 2018, The British journal of dermatology.

[2]  Dong-Woo Cho,et al.  3D cell printing of in vitro stabilized skin model and in vivo pre-vascularized skin patch using tissue-specific extracellular matrix bioink: A step towards advanced skin tissue engineering. , 2018, Biomaterials.

[3]  J. Bouwstra,et al.  3D skin models for 3R research: The potential of 3D reconstructed skin models to study skin barrier function , 2018, Experimental dermatology.

[4]  A. Nikkels,et al.  Methyl‐β‐cyclodextrin concurs with interleukin (IL)‐4, IL‐13 and IL‐25 to induce alterations reminiscent of atopic dermatitis in reconstructed human epidermis , 2018, Experimental dermatology.

[5]  A. Jere,et al.  Elucidating mechanistic insights into drug action for atopic dermatitis: a systems biology approach , 2018, BMC Dermatology.

[6]  K. Eyerich,et al.  Immune response patterns in non‐communicable inflammatory skin diseases , 2018, Journal of the European Academy of Dermatology and Venereology : JEADV.

[7]  F. Rieux-Laucat,et al.  Long-term follow-up of IPEX syndrome patients after different therapeutic strategies: An international multicenter retrospective study , 2017, The Journal of allergy and clinical immunology.

[8]  B. Schröder,et al.  Mast cells acquire MHCII from dendritic cells during skin inflammation , 2017, The Journal of experimental medicine.

[9]  M. D. de Bruin‐Weller,et al.  EASI p-EASI: Utilizing a combination of serum biomarkers offers an objective measurement tool for disease severity in atopic dermatitis patients. , 2017, The Journal of allergy and clinical immunology.

[10]  Y. Kumagai,et al.  Dosage Optimization of Nemolizumab Using Population Pharmacokinetic and Pharmacokinetic‐Pharmacodynamic Modeling and Simulation , 2017, Journal of clinical pharmacology.

[11]  N. Reynolds,et al.  Proteomic analysis of filaggrin deficiency identifies molecular signatures characteristic of atopic eczema , 2017, The Journal of allergy and clinical immunology.

[12]  David M. Evans,et al.  Identification of atopic dermatitis subgroups in children from 2 longitudinal birth cohorts , 2017, Pediatrics.

[13]  M. Suárez-Fariñas,et al.  Molecular signatures order the potency of topically applied anti‐inflammatory drugs in patients with atopic dermatitis , 2017, The Journal of allergy and clinical immunology.

[14]  J. Krueger,et al.  Atopic dermatitis and psoriasis: two different immune diseases or one spectrum? , 2017, Current opinion in immunology.

[15]  Fabian J Theis,et al.  Toll‐like receptor 7/8 agonists stimulate plasmacytoid dendritic cells to initiate TH17‐deviated acute contact dermatitis in human subjects , 2017, The Journal of allergy and clinical immunology.

[16]  S. Tötemeyer,et al.  A Novel 3D Skin Explant Model to Study Anaerobic Bacterial Infection , 2017, Front. Cell. Infect. Microbiol..

[17]  M. Afarideh,et al.  Clinical, immunologic, and genetic spectrum of 696 patients with combined immunodeficiency , 2017, The Journal of allergy and clinical immunology.

[18]  J. Silverberg,et al.  Association between atopic dermatitis and contact sensitization: A systematic review and meta‐analysis , 2017, Journal of the American Academy of Dermatology.

[19]  H. Abaci,et al.  Next generation human skin constructs as advanced tools for drug development , 2017, Experimental biology and medicine.

[20]  Mariko Okada-Hatakeyama,et al.  Mathematical modeling of atopic dermatitis reveals “double‐switch” mechanisms underlying 4 common disease phenotypes , 2017, The Journal of allergy and clinical immunology.

[21]  H. Williams,et al.  Computational design of treatment strategies for proactive therapy on atopic dermatitis using optimal control theory , 2017, Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences.

[22]  M. Tsai,et al.  Imaging protective mast cells in living mice during severe contact hypersensitivity. , 2017, JCI insight.

[23]  M. Melbye,et al.  Prevalence of atopic dermatitis in infants by domestic water hardness and season of birth: Cohort study , 2017, The Journal of allergy and clinical immunology.

[24]  Tom C Freeman,et al.  Petri Net computational modelling of Langerhans cell Interferon Regulatory Factor Network predicts their role in T cell activation , 2017, Scientific Reports.

[25]  A. Gruber,et al.  TSLP is a direct trigger for T cell migration in filaggrin-deficient skin equivalents , 2017, Scientific Reports.

[26]  N. Hacohen,et al.  Single-cell RNA-seq reveals new types of human blood dendritic cells, monocytes, and progenitors , 2017, Science.

[27]  C. Johansen,et al.  The "Alarmins" HMBG1 and IL-33 Downregulate Structural Skin Barrier Proteins and Impair Epidermal Growth. , 2017, Acta dermato-venereologica.

[28]  H. Sampson,et al.  Patch testing of food allergens promotes Th17 and Th2 responses with increased IL‐33: a pilot study , 2017, Experimental dermatology.

[29]  M. Suárez-Fariñas,et al.  An Integrated Model of Atopic Dermatitis Biomarkers Highlights the Systemic Nature of the Disease. , 2017, The Journal of investigative dermatology.

[30]  Léa J Pourchet,et al.  Human Skin 3D Bioprinting Using Scaffold‐Free Approach , 2017, Advanced healthcare materials.

[31]  Sebastian Thrun,et al.  Dermatologist-level classification of skin cancer with deep neural networks , 2017, Nature.

[32]  John D. Davis,et al.  Exploratory Population PK Analysis of Dupilumab, a Fully Human Monoclonal Antibody Against IL‐4Rα, in Atopic Dermatitis Patients and Normal Volunteers , 2016, CPT: pharmacometrics & systems pharmacology.

[33]  Fabian J Theis,et al.  A computational model to predict severity of atopic eczema from 30 serum proteins. , 2016, The Journal of allergy and clinical immunology.

[34]  I. Momas,et al.  In vitro model adapted to the study of skin ageing induced by air pollution. , 2016, Toxicology letters.

[35]  Mayte Suárez-Fariñas,et al.  Major differences between human atopic dermatitis and murine models, as determined by using global transcriptomic profiling , 2016, The Journal of allergy and clinical immunology.

[36]  Y. Tokura,et al.  Impaired Tight Junctions in Atopic Dermatitis Skin and in a Skin-Equivalent Model Treated with Interleukin-17 , 2016, PloS one.

[37]  C. Akdis,et al.  Cellular and molecular immunologic mechanisms in patients with atopic dermatitis. , 2016, The Journal of allergy and clinical immunology.

[38]  A. Kim,et al.  Control of the Physical and Antimicrobial Skin Barrier by an IL-31–IL-1 Signaling Network , 2016, The Journal of Immunology.

[39]  Monika Schäfer-Korting,et al.  Influence of Th2 Cytokines on the Cornified Envelope, Tight Junction Proteins, and ß-Defensins in Filaggrin-Deficient Skin Equivalents. , 2016, The Journal of investigative dermatology.

[40]  Nick Barker,et al.  Organoids as an in vitro model of human development and disease , 2016, Nature Cell Biology.

[41]  B. Closs,et al.  From the morphological to the transcriptomic characterization of a compromised three‐dimensional in vitro model mimicking atopic dermatitis , 2015, The British journal of dermatology.

[42]  N. Krug,et al.  Exacerbation of atopic dermatitis on grass pollen exposure in an environmental challenge chamber. , 2015, The Journal of allergy and clinical immunology.

[43]  A. Lavrijsen,et al.  Explant cultures of atopic dermatitis biopsies maintain their epidermal characteristics in vitro , 2015, Cell and Tissue Research.

[44]  M. Suárez-Fariñas,et al.  Patients with atopic dermatitis have attenuated and distinct contact hypersensitivity responses to common allergens in skin. , 2015, The Journal of allergy and clinical immunology.

[45]  M. Suárez-Fariñas,et al.  Molecular profiling of contact dermatitis skin identifies allergen-dependent differences in immune response. , 2014, The Journal of allergy and clinical immunology.

[46]  Fabian J Theis,et al.  Intraindividual genome expression analysis reveals a specific molecular signature of psoriasis and eczema , 2014, Science Translational Medicine.

[47]  M. Galliano,et al.  In vitro approaches to pharmacological screening in the field of atopic dermatitis , 2014, The British journal of dermatology.

[48]  J. Bouwstra,et al.  TNF-α and Th2 cytokines induce atopic dermatitis-like features on epidermal differentiation proteins and stratum corneum lipids in human skin equivalents. , 2014, The Journal of investigative dermatology.

[49]  P. Howarth,et al.  Sensitization via healthy skin programs Th2 responses in individuals with atopic dermatitis. , 2013, The Journal of investigative dermatology.

[50]  Horst Wenck,et al.  Role of fibroblasts in the pathogenesis of atopic dermatitis. , 2013, The Journal of allergy and clinical immunology.

[51]  M. Suárez-Fariñas,et al.  Progressive activation of T(H)2/T(H)22 cytokines and selective epidermal proteins characterizes acute and chronic atopic dermatitis. , 2012, The Journal of allergy and clinical immunology.

[52]  A. Irvine,et al.  Filaggrin mutations associated with skin and allergic diseases. , 2011, The New England journal of medicine.

[53]  J. Ring,et al.  Mutual antagonism of T cells causing psoriasis and atopic eczema. , 2011, The New England journal of medicine.

[54]  J. Krueger,et al.  Contrasting pathogenesis of atopic dermatitis and psoriasis--part II: immune cell subsets and therapeutic concepts. , 2011, The Journal of allergy and clinical immunology.

[55]  J. Schalkwijk,et al.  Epithelial and Mesenchymal Cell Biology Type 2 Helper T-Cell Cytokines Induce Morphologic and Molecular Characteristics of Atopic Dermatitis in Human Skin Equivalent , 2011 .

[56]  J. Schmitt,et al.  Efficacy and tolerability of proactive treatment with topical corticosteroids and calcineurin inhibitors for atopic eczema: systematic review and meta‐analysis of randomized controlled trials , 2011, The British journal of dermatology.

[57]  T. Werfel,et al.  Staphylococcal exotoxins are strong inducers of IL-22: A potential role in atopic dermatitis. , 2010, The Journal of allergy and clinical immunology.

[58]  C. Marionnet,et al.  Different Oxidative Stress Response in Keratinocytes and Fibroblasts of Reconstructed Skin Exposed to Non Extreme Daily-Ultraviolet Radiation , 2010, PloS one.

[59]  K. Barnes,et al.  Cytokine modulation of atopic dermatitis filaggrin skin expression. , 2007, The Journal of allergy and clinical immunology.

[60]  X. Sastre,et al.  Cutting Edge: Proinflammatory and Th2 Cytokines Synergize to Induce Thymic Stromal Lymphopoietin Production by Human Skin Keratinocytes1 , 2007, The Journal of Immunology.

[61]  T. Werfel,et al.  Staphylococcus aureus‐derived enterotoxins enhance house dust mite‐induced patch test reactions in atopic dermatitis , 2007, Experimental dermatology.

[62]  B. Niggemann,et al.  EAACI/GA2LEN Position paper: Present status of the atopy patch test * , 2006, Allergy.

[63]  P. Schmid‐Grendelmeier,et al.  IgE-mediated and T cell-mediated autoimmunity against manganese superoxide dismutase in atopic dermatitis. , 2005, The Journal of allergy and clinical immunology.

[64]  A. Wollenberg,et al.  Atopy patch test reactions show a rapid influx of inflammatory dendritic epidermal cells in patients with extrinsic atopic dermatitis and patients with intrinsic atopic dermatitis. , 2003, The Journal of allergy and clinical immunology.

[65]  J. Ring,et al.  Evaluating the relevance of aeroallergen sensitization in atopic eczema with the atopy patch test: a randomized, double-blind multicenter study. Atopy Patch Test Study Group. , 1999, Journal of the American Academy of Dermatology.

[66]  A. Giannetti,et al.  Granulocyte macrophage colony-stimulating factor is overproduced by keratinocytes in atopic dermatitis. Implications for sustained dendritic cell activation in the skin. , 1997, The Journal of clinical investigation.

[67]  J. Ring,et al.  Atopy patch test with different vehicles and allergen concentrations: an approach to standardization. , 1995, The Journal of allergy and clinical immunology.

[68]  Gabriele Schilling,et al.  House dust mite-specific T cells in the skin of subjects with atopic dermatitis: frequency and lymphokine profile in the allergen patch test. , 1992, The Journal of allergy and clinical immunology.

[69]  J. Silverberg,et al.  Increasing Comorbidities Suggest that Atopic Dermatitis Is a Systemic Disorder. , 2017, The Journal of investigative dermatology.

[70]  Weidinger,et al.  Genetics (AAGC) (2015). Multi-ancestry genome-wide association study of 21,000 cases and 95,000 controls identifies new risk loci for atopic dermatitis. , 2015 .

[71]  A. Remitz,et al.  High serum total IgE predicts poor long-term outcome in atopic dermatitis. , 2015, Acta dermato-venereologica.

[72]  A. Wollenberg,et al.  Atopic dermatitis, STAT3- and DOCK8-hyper-IgE syndromes differ in IgE-based sensitization pattern. , 2014, Allergy.

[73]  S. Narumiya,et al.  Possible new therapeutic strategy to regulate atopic dermatitis through upregulating filaggrin expression. , 2014, The Journal of allergy and clinical immunology.

[74]  J. Ring,et al.  IL-17 in atopic eczema: linking allergen-specific adaptive and microbial-triggered innate immune response. , 2009, The Journal of allergy and clinical immunology.

[75]  H. Mizutani,et al.  Animal Models of Atopic Dermatitis , 2004 .

[76]  I I Lelis,et al.  [Atopic dermatitis]. , 1980, Vestnik dermatologii i venerologii.