论文信息 - The complete chloroplast genome of Actinidia valvata (Actinidiaceae)

The complete chloroplast genome of Actinidia valvata (Actinidiaceae)

Abstract The complete chloroplast (cp) genome of Actinidia valvata (A. valvata) was sequenced and assembled into a circular genome of 156,548 bp in length using Illumina paired-end data. The genome consisted of a pair of inverted repeats (IR) (23,378 bp each) separating two single-copy regions, the large single-copy region (LSC) 88,397 bp and the small single-copy region (SSC) 21,395 bp. The cp genome encoded a total of 131 genes, including 85 protein-coding genes, 38 tRNA genes, and 8 rRNA genes. The phylogenetic analysis showed that A. valvata was sister to Actinidia tetramera (A. tetramera).

Di Bai | Yiqing Xu | Haifeng Lin

[1] Michael J. Moore,et al. PGA: a software package for rapid, accurate, and flexible batch annotation of plastomes , 2019, Plant Methods.

[2] Sudhir Kumar,et al. MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms. , 2018, Molecular biology and evolution.

[3] Jia Gu,et al. fastp: an ultra-fast all-in-one FASTQ preprocessor , 2018, bioRxiv.

[4] Patrick Mardulyn,et al. NOVOPlasty: de novo assembly of organelle genomes from whole genome data. , 2016, Nucleic acids research.

[5] C. Ling,et al. New Triterpenoids with Cytotoxic Activity from Actinidia Valvata , 2012, International journal of molecular sciences.

[6] C. Ling,et al. Hepatoprotective Activity of the Total Saponins from Actinidia valvata Dunn Root against Carbon Tetrachloride-Induced Liver Damage in Mice , 2012, Evidence-based complementary and alternative medicine : eCAM.

[7] Song Yan,et al. Morphological identification and the clinical application of the roots of Actinidia chinensis and Actinidia valvata , 2005 .